Wall clock time and date at job start Tue Mar 31 2020 05:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47324 * 2 1 4 4 C 1.50702 * 109.47109 * 120.00138 * 2 1 3 5 5 H 1.07999 * 120.00315 * 120.00083 * 4 2 1 6 6 C 1.37884 * 119.99652 * 299.99735 * 4 2 1 7 7 N 1.31517 * 119.99920 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 120.00126 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47116 * 89.99697 * 8 6 4 10 10 H 1.48499 * 109.46979 * 210.00227 * 8 6 4 11 11 H 1.48504 * 109.47016 * 329.99848 * 8 6 4 12 12 N 1.46507 * 109.46954 * 239.99555 * 2 1 3 13 13 C 1.34768 * 119.99546 * 85.00251 * 12 2 1 14 14 O 1.21283 * 120.00315 * 0.02562 * 13 12 2 15 15 C 1.50705 * 119.99693 * 179.97438 * 13 12 2 16 16 C 1.53357 * 109.46914 * 180.02562 * 15 13 12 17 17 H 1.08686 * 108.85440 * 55.47266 * 16 15 13 18 18 C 1.52771 * 109.11172 * 294.99809 * 16 15 13 19 19 C 1.52216 * 110.71479 * 179.97438 * 18 16 15 20 20 H 1.11134 * 106.98272 * 169.84100 * 19 18 16 21 21 C 1.52830 * 110.63162 * 285.58655 * 19 18 16 22 22 C 1.51530 * 113.13023 * 51.78491 * 19 18 16 23 23 C 1.51849 * 115.72590 * 316.61262 * 22 19 18 24 24 C 1.53122 * 111.01837 * 279.83576 * 23 22 19 25 25 C 1.54417 * 108.00185 * 162.33475 * 23 22 19 26 26 C 1.52454 * 112.46562 * 43.60937 * 23 22 19 27 27 H 1.09001 * 109.47291 * 299.99974 * 1 2 3 28 28 H 1.08997 * 109.46869 * 59.99971 * 1 2 3 29 29 H 1.09002 * 109.47217 * 180.02562 * 1 2 3 30 30 H 0.97000 * 119.99928 * 180.02562 * 7 6 4 31 31 H 0.96998 * 119.99519 * 265.00068 * 12 2 1 32 32 H 1.08998 * 109.46997 * 60.00105 * 15 13 12 33 33 H 1.08996 * 109.47136 * 299.99875 * 15 13 12 34 34 H 1.09332 * 109.18549 * 59.25198 * 18 16 15 35 35 H 1.09315 * 109.22089 * 300.70889 * 18 16 15 36 36 H 1.08997 * 109.47148 * 59.99992 * 21 19 18 37 37 H 1.08997 * 109.47351 * 180.02562 * 21 19 18 38 38 H 1.08999 * 109.46986 * 299.99575 * 21 19 18 39 39 H 1.10246 * 108.73991 * 79.01942 * 22 19 18 40 40 H 1.10213 * 108.79606 * 194.08078 * 22 19 18 41 41 H 1.08994 * 109.46922 * 185.15460 * 24 23 22 42 42 H 1.09001 * 109.47246 * 305.15762 * 24 23 22 43 43 H 1.09001 * 109.46746 * 65.15640 * 24 23 22 44 44 H 1.08998 * 109.47604 * 298.29397 * 25 23 22 45 45 H 1.09003 * 109.47402 * 58.28907 * 25 23 22 46 46 H 1.08996 * 109.47305 * 178.29014 * 25 23 22 47 47 H 1.09312 * 109.42082 * 186.85047 * 26 23 22 48 48 H 1.09310 * 109.42939 * 67.99407 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1380 -0.8590 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9952 3.9067 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8591 1.1585 -2.4115 15 6 2.6499 -0.7288 -3.5874 16 6 2.7020 0.2567 -4.7612 17 1 3.3104 1.1110 -4.4759 18 6 1.2818 0.7058 -5.1007 19 6 1.2911 1.6879 -6.2636 20 1 0.2346 1.8282 -6.5785 21 6 1.7969 3.0564 -5.8087 22 6 2.0584 1.1784 -7.4668 23 6 3.3866 0.5069 -7.1655 24 6 4.4859 1.5459 -6.9277 25 6 3.7942 -0.3216 -8.4033 26 6 3.3020 -0.4449 -5.9776 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.9034 -0.5277 4.4376 31 1 2.2490 -1.6319 -1.1525 32 1 1.9776 -1.5511 -3.8324 33 1 3.6492 -1.1206 -3.3978 34 1 0.8359 1.1815 -4.2231 35 1 0.6813 -0.1686 -5.3647 36 1 2.8110 2.9586 -5.4214 37 1 1.7954 3.7439 -6.6545 38 1 1.1445 3.4430 -5.0258 39 1 1.4222 0.4654 -8.0167 40 1 2.2384 2.0198 -8.1556 41 1 5.4435 1.0401 -6.8049 42 1 4.5385 2.2212 -7.7817 43 1 4.2581 2.1161 -6.0271 44 1 3.0454 -1.0919 -8.5877 45 1 3.8633 0.3331 -9.2721 46 1 4.7615 -0.7908 -8.2240 47 1 4.3035 -0.8053 -5.7285 48 1 2.6790 -1.3031 -6.2429 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066642315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:24 Heat of formation + Delta-G solvation = -79.315915 kcal Electronic energy + Delta-G solvation = -23425.059875 eV Core-core repulsion = 20285.212275 eV Total energy + Delta-G solvation = -3139.847600 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.07333 -38.63656 -35.13196 -34.09976 -33.20514 -32.33170 -30.04928 -27.66168 -27.15944 -26.60721 -26.11783 -25.15157 -22.05911 -20.86789 -20.12778 -19.43734 -18.01982 -17.07770 -15.89825 -15.70830 -15.25208 -14.94606 -14.58377 -14.39144 -14.21878 -13.86665 -13.60684 -13.25090 -12.95145 -12.82393 -12.55554 -12.28953 -12.22072 -12.17306 -11.86691 -11.79260 -11.69151 -11.36694 -11.23437 -11.03306 -10.97032 -10.79795 -10.74849 -10.67015 -10.17145 -10.13208 -10.06477 -9.74861 -9.64623 -9.20589 -8.90536 -8.73625 -8.07715 -6.19717 -4.21857 3.24099 3.34181 3.36259 3.41106 4.03020 4.32955 4.54692 4.56961 4.66535 4.99441 5.09687 5.15157 5.15926 5.19877 5.29090 5.35339 5.47558 5.52159 5.53945 5.66886 5.69763 5.73977 5.79296 5.81390 5.82474 5.85468 5.95133 6.00669 6.06586 6.09477 6.15973 6.20929 6.33518 6.37225 6.41358 6.42568 6.49710 6.58547 6.64578 6.72329 6.89106 7.23367 7.35771 7.56491 8.19607 8.58949 8.78412 9.03281 9.41875 10.92584 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.031860 B = 0.003737 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.636971 B = 7491.122196 C = 7888.777137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.236 3.764 3 H 0.047 0.953 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.077 3.923 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.262 1.262 12 N -0.705 5.705 13 C 0.502 3.498 14 O -0.553 6.553 15 C -0.141 4.141 16 C -0.065 4.065 17 H 0.081 0.919 18 C -0.113 4.113 19 C -0.081 4.081 20 H 0.054 0.946 21 C -0.145 4.145 22 C -0.096 4.096 23 C -0.056 4.056 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.102 4.102 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.051 0.949 30 H 0.267 0.733 31 H 0.394 0.606 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 1.192 -22.454 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.097 0.903 6 C -0.126 4.126 7 N -0.531 5.531 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.432 6.432 15 C -0.181 4.181 16 C -0.084 4.084 17 H 0.099 0.901 18 C -0.151 4.151 19 C -0.100 4.100 20 H 0.072 0.928 21 C -0.202 4.202 22 C -0.134 4.134 23 C -0.056 4.056 24 C -0.202 4.202 25 C -0.203 4.203 26 C -0.139 4.139 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.227 0.773 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.115 2.021 -22.279 22.398 hybrid contribution -0.516 0.126 0.329 0.625 sum 0.599 2.146 -21.950 22.063 Atomic orbital electron populations 1.22439 0.99455 1.00719 0.99195 1.19061 0.90017 0.94654 0.83012 0.93475 1.21072 1.33151 1.14364 0.88637 0.90276 1.24846 0.95521 0.96714 0.95543 1.69874 1.44998 1.40177 0.98031 0.86862 0.80501 0.83630 0.77395 1.20356 1.22201 1.18666 1.46233 1.65317 1.13786 1.09968 1.20567 0.78302 0.87586 0.84795 1.90604 1.51383 1.16162 1.85090 1.21863 1.02666 0.99590 0.94006 1.20744 0.97602 0.97699 0.92360 0.90090 1.21592 0.96339 0.98425 0.98713 1.20726 0.98779 0.95493 0.94970 0.92761 1.21877 1.02063 0.95751 1.00482 1.21275 0.95237 0.99745 0.97098 1.20332 0.95000 0.95314 0.94922 1.22039 0.97626 0.98609 1.01902 1.22289 1.01074 0.99525 0.97367 1.21544 1.00753 0.97550 0.94090 0.93593 0.94593 0.92945 0.92327 0.77302 0.89630 0.89467 0.89459 0.93178 0.92226 0.93607 0.92581 0.92895 0.92682 0.92928 0.93096 0.91852 0.92931 0.93042 0.92801 0.92165 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.96 37.16 0.33 -3.27 16 2 C 0.24 5.66 2.15 -69.08 -0.15 5.51 16 3 H 0.05 1.25 6.64 -51.93 -0.34 0.91 16 4 C -0.53 -14.55 9.31 -34.44 -0.32 -14.87 16 5 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 6 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 7 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 8 Si 0.89 21.98 24.37 -169.99 -4.14 17.84 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.26 -6.47 6.53 56.52 0.37 -6.10 16 12 N -0.71 -13.90 5.07 -54.93 -0.28 -14.18 16 13 C 0.50 9.15 7.50 -10.99 -0.08 9.07 16 14 O -0.55 -11.83 13.61 5.55 0.08 -11.76 16 15 C -0.14 -1.85 5.16 -27.70 -0.14 -1.99 16 16 C -0.07 -0.81 1.65 -90.70 -0.15 -0.96 16 17 H 0.08 1.15 5.98 -52.11 -0.31 0.84 16 18 C -0.11 -1.47 4.36 -27.25 -0.12 -1.59 16 19 C -0.08 -0.91 2.60 -91.85 -0.24 -1.15 16 20 H 0.05 0.60 8.29 -50.70 -0.42 0.18 16 21 C -0.14 -1.70 8.90 37.07 0.33 -1.37 16 22 C -0.10 -0.93 4.12 -28.06 -0.12 -1.04 16 23 C -0.06 -0.52 0.71 -154.57 -0.11 -0.63 16 24 C -0.14 -1.35 8.02 37.22 0.30 -1.05 16 25 C -0.15 -1.16 8.08 37.90 0.31 -0.85 16 26 C -0.10 -1.02 3.77 -27.16 -0.10 -1.12 16 27 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 31 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.41 5.85 -51.74 -0.30 1.11 16 35 H 0.05 0.61 8.17 -51.75 -0.42 0.19 16 36 H 0.06 0.73 4.97 -51.93 -0.26 0.47 16 37 H 0.04 0.46 8.05 -51.93 -0.42 0.05 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.49 7.94 -51.22 -0.41 0.08 16 40 H 0.05 0.50 7.87 -51.24 -0.40 0.10 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.43 8.08 -51.93 -0.42 0.02 16 43 H 0.06 0.66 4.76 -51.93 -0.25 0.42 16 44 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.57 8.13 -51.75 -0.42 0.15 16 48 H 0.06 0.57 8.11 -51.75 -0.42 0.15 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -30.27 352.41 -7.34 -37.61 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.72 Total: 4.29 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -0.36 Total: -13.23 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.50 Total: -40.05 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.27 -7.34 -37.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066642315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.709 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds