Wall clock time and date at job start Tue Mar 31 2020 06:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46736 * 2 1 4 4 C 1.52997 * 109.46829 * 119.99822 * 2 1 3 5 5 C 1.50705 * 109.47299 * 295.00123 * 4 2 1 6 6 O 1.21293 * 120.00066 * 353.56203 * 5 4 2 7 7 N 1.34775 * 120.00019 * 173.57419 * 5 4 2 8 8 C 1.37094 * 120.00217 * 5.41493 * 7 5 4 9 9 H 1.08001 * 120.00256 * 227.99443 * 8 7 5 10 10 C 1.38946 * 120.00194 * 47.98932 * 8 7 5 11 11 N 1.31405 * 120.00657 * 203.01964 * 10 8 7 12 12 Si 1.86805 * 119.99723 * 23.01896 * 10 8 7 13 13 H 1.48502 * 109.47300 * 88.23455 * 12 10 8 14 14 H 1.48497 * 109.47121 * 208.23653 * 12 10 8 15 15 H 1.48501 * 109.47235 * 328.23677 * 12 10 8 16 16 C 1.46503 * 119.99796 * 185.41952 * 7 5 4 17 17 C 1.54268 * 110.03237 * 238.61327 * 16 7 5 18 18 C 1.54965 * 104.15689 * 217.13622 * 17 16 7 19 19 C 1.54889 * 102.77833 * 37.88926 * 18 17 16 20 20 C 1.53873 * 110.03062 * 121.39527 * 16 7 5 21 21 C 1.53000 * 109.47147 * 239.99861 * 2 1 3 22 22 C 1.53001 * 109.47073 * 59.99967 * 21 2 1 23 23 C 1.53004 * 109.46620 * 179.97438 * 21 2 1 24 24 C 1.53001 * 109.47071 * 299.99989 * 21 2 1 25 25 H 1.09002 * 109.47256 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47273 * 300.00031 * 1 2 3 27 27 H 1.08999 * 109.46973 * 60.00262 * 1 2 3 28 28 H 1.08994 * 109.47694 * 55.00350 * 4 2 1 29 29 H 1.09001 * 109.46886 * 175.00637 * 4 2 1 30 30 H 0.96995 * 120.00711 * 180.02562 * 11 10 8 31 31 H 1.08999 * 110.01728 * 0.02562 * 16 7 5 32 32 H 1.08998 * 110.48287 * 335.78369 * 17 16 7 33 33 H 1.08997 * 110.48158 * 98.42640 * 17 16 7 34 34 H 1.09000 * 110.72291 * 279.57130 * 18 17 16 35 35 H 1.09003 * 110.91826 * 156.29279 * 18 17 16 36 36 H 1.08994 * 110.48650 * 203.39942 * 19 18 17 37 37 H 1.09007 * 110.59953 * 80.81349 * 19 18 17 38 38 H 1.09002 * 110.03312 * 238.56967 * 20 16 7 39 39 H 1.09004 * 110.03726 * 359.94999 * 20 16 7 40 40 H 1.09002 * 109.46929 * 60.00094 * 22 21 2 41 41 H 1.08997 * 109.46430 * 179.97438 * 22 21 2 42 42 H 1.08991 * 109.47297 * 300.00129 * 22 21 2 43 43 H 1.08999 * 109.47215 * 60.00051 * 23 21 2 44 44 H 1.09006 * 109.46541 * 179.97438 * 23 21 2 45 45 H 1.08991 * 109.47101 * 299.99874 * 23 21 2 46 46 H 1.08991 * 109.46972 * 60.00071 * 24 21 2 47 47 H 1.09000 * 109.46920 * 180.02562 * 24 21 2 48 48 H 1.09004 * 109.46966 * 299.99702 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4766 6 8 1.1148 1.1437 2.3612 7 7 1.8698 -0.4541 3.7025 8 6 2.5637 -1.6288 3.8369 9 1 2.1810 -2.4122 4.4744 10 6 3.7592 -1.8118 3.1529 11 7 4.1930 -3.0263 2.9010 12 14 4.7499 -0.3310 2.5912 13 1 5.6773 0.0839 3.6743 14 1 5.5314 -0.6887 1.3803 15 1 3.8284 0.7891 2.2726 16 6 1.3767 0.2455 4.8915 17 6 2.5537 0.5932 5.8262 18 6 1.9778 0.3943 7.2510 19 6 1.0733 -0.8520 7.0840 20 6 0.4356 -0.6726 5.6909 21 6 2.0400 -0.7213 -1.2492 22 6 1.5300 0.0000 -2.4985 23 6 3.5701 -0.7206 -1.2494 24 6 1.5300 -2.1638 -1.2492 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.6054 -1.7197 1.2952 29 1 3.1263 -0.7993 1.2057 30 1 5.0278 -3.1540 2.4238 31 1 0.8512 1.1544 4.5985 32 1 3.3900 -0.0846 5.6548 33 1 2.8639 1.6279 5.6802 34 1 1.3897 1.2607 7.5537 35 1 2.7744 0.2000 7.9692 36 1 0.3042 -0.8713 7.8561 37 1 1.6683 -1.7648 7.1166 38 1 -0.5461 -0.2088 5.7866 39 1 0.3450 -1.6385 5.1938 40 1 1.8934 1.0276 -2.4985 41 1 1.8938 -0.5137 -3.3884 42 1 0.4401 0.0000 -2.4985 43 1 3.9337 -1.2342 -0.3594 44 1 3.9334 -1.2349 -2.1392 45 1 3.9329 0.3071 -1.2497 46 1 0.4401 -2.1638 -1.2492 47 1 1.8938 -2.6777 -2.1389 48 1 1.8934 -2.6776 -0.3592 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003210.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:27 Heat of formation + Delta-G solvation = -55.564253 kcal Electronic energy + Delta-G solvation = -24677.878956 eV Core-core repulsion = 21539.061305 eV Total energy + Delta-G solvation = -3138.817651 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.60049 -38.09693 -36.54953 -34.13855 -31.85787 -31.17978 -28.52357 -28.07898 -27.22544 -26.95770 -25.62012 -24.44757 -22.41541 -20.10343 -19.74653 -19.26704 -17.56353 -16.99182 -15.83261 -15.76217 -14.90635 -14.69781 -14.26039 -13.93121 -13.81235 -13.73017 -13.40851 -13.10906 -12.67834 -12.60532 -12.44717 -11.98346 -11.66654 -11.61505 -11.49632 -11.43992 -11.03699 -10.99427 -10.78831 -10.76709 -10.68695 -10.56677 -10.48457 -10.29933 -10.12580 -10.06794 -9.86918 -9.81944 -9.77998 -9.52831 -8.95608 -8.44135 -7.52847 -6.50233 -4.15088 3.08193 3.20271 3.32019 3.85981 4.12260 4.47714 4.88064 5.13351 5.18950 5.20890 5.25973 5.29402 5.49771 5.66945 5.80957 5.83703 5.95260 5.99542 6.01559 6.05744 6.09263 6.15226 6.16406 6.20072 6.20872 6.24163 6.31973 6.33502 6.35647 6.42065 6.45152 6.51502 6.53403 6.57759 6.59844 6.61528 6.69361 6.81274 6.85901 6.96671 7.03074 7.06343 7.12185 7.69453 7.83712 8.52090 9.00883 9.37499 9.81376 10.59524 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.006819 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.522655 B = 4104.956254 C = 4704.921005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 H 0.069 0.931 4 C -0.118 4.118 5 C 0.494 3.506 6 O -0.597 6.597 7 N -0.469 5.469 8 C -0.339 4.339 9 H 0.099 0.901 10 C 0.079 3.921 11 N -0.853 5.853 12 Si 0.845 3.155 13 H -0.281 1.281 14 H -0.277 1.277 15 H -0.253 1.253 16 C 0.130 3.870 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.065 4.065 22 C -0.139 4.139 23 C -0.148 4.148 24 C -0.145 4.145 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.095 0.905 29 H 0.076 0.924 30 H 0.275 0.725 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.046 0.954 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.512 2.549 -2.592 5.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 H 0.087 0.913 4 C -0.157 4.157 5 C 0.285 3.715 6 O -0.482 6.482 7 N -0.190 5.190 8 C -0.466 4.466 9 H 0.116 0.884 10 C -0.129 4.129 11 N -0.488 5.488 12 Si 0.671 3.329 13 H -0.208 1.208 14 H -0.203 1.203 15 H -0.178 1.178 16 C 0.026 3.974 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.165 4.165 21 C -0.065 4.065 22 C -0.196 4.196 23 C -0.205 4.205 24 C -0.202 4.202 25 H 0.068 0.932 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.642 2.927 -2.719 5.406 hybrid contribution 0.997 0.556 -0.200 1.159 sum -2.645 3.483 -2.920 5.258 Atomic orbital electron populations 1.21955 0.95337 1.01126 1.01997 1.20929 0.96042 0.99079 0.92485 0.91283 1.21754 1.01572 1.00495 0.91924 1.20542 0.79276 0.86363 0.85342 1.90480 1.48066 1.22599 1.87057 1.43856 1.50120 1.22291 1.02749 1.18784 1.03606 0.91637 1.32545 0.88364 1.25523 0.96249 0.95805 0.95278 1.69755 1.21717 1.20632 1.36670 0.87440 0.81280 0.85554 0.78657 1.20803 1.20307 1.17756 1.21623 0.94044 0.95119 0.86615 1.22690 0.99678 1.00757 0.93841 1.22413 0.98632 0.97707 0.97030 1.22264 0.98304 0.98446 0.96453 1.22388 0.97542 1.01034 0.95489 1.20552 0.95105 0.95810 0.95057 1.21895 1.01066 0.99881 0.96746 1.22004 0.95264 1.01403 1.01862 1.21975 1.00939 0.95418 1.01896 0.93229 0.91140 0.93557 0.88634 0.90602 0.91496 0.90022 0.89752 0.92903 0.92335 0.92207 0.92802 0.91398 0.92844 0.90618 0.93071 0.93248 0.92417 0.92027 0.93007 0.93157 0.92515 0.93451 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.24 37.16 0.31 -2.26 16 2 C -0.07 -1.25 1.39 -90.62 -0.13 -1.38 16 3 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 4 C -0.12 -2.58 2.46 -27.88 -0.07 -2.65 16 5 C 0.49 11.88 4.83 -10.98 -0.05 11.83 16 6 O -0.60 -15.16 13.59 5.55 0.08 -15.09 16 7 N -0.47 -11.07 1.97 -106.54 -0.21 -11.28 16 8 C -0.34 -8.47 7.43 -14.94 -0.11 -8.59 16 9 H 0.10 2.61 7.31 -52.49 -0.38 2.22 16 10 C 0.08 2.02 4.22 -17.47 -0.07 1.95 16 11 N -0.85 -22.49 13.96 55.50 0.77 -21.72 16 12 Si 0.84 20.36 24.36 -169.99 -4.14 16.22 16 13 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.25 -6.38 5.46 56.52 0.31 -6.07 16 16 C 0.13 2.72 3.29 -66.81 -0.22 2.50 16 17 C -0.13 -2.53 6.42 -25.03 -0.16 -2.69 16 18 C -0.12 -1.87 6.91 -24.70 -0.17 -2.05 16 19 C -0.12 -1.86 6.83 -25.07 -0.17 -2.03 16 20 C -0.13 -2.29 6.23 -25.61 -0.16 -2.45 16 21 C -0.07 -1.04 0.57 -154.51 -0.09 -1.13 16 22 C -0.14 -1.87 8.12 37.16 0.30 -1.57 16 23 C -0.15 -2.45 8.13 37.16 0.30 -2.15 16 24 C -0.15 -2.21 7.77 37.16 0.29 -1.93 16 25 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 26 H 0.07 1.40 6.19 -51.93 -0.32 1.08 16 27 H 0.05 0.70 6.43 -51.93 -0.33 0.37 16 28 H 0.10 2.12 6.57 -51.93 -0.34 1.78 16 29 H 0.08 1.73 1.35 -51.93 -0.07 1.66 16 30 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.08 1.78 6.96 -51.93 -0.36 1.42 16 32 H 0.08 1.82 7.06 -51.93 -0.37 1.45 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.50 6.89 -51.93 -0.36 1.14 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.74 6.43 -51.93 -0.33 0.40 16 43 H 0.06 1.16 6.03 -51.93 -0.31 0.85 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 47 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.07 1.14 6.54 -51.93 -0.34 0.80 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -26.99 342.72 -7.02 -34.01 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -8.48 Total: 7.28 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: -0.20 Total: -14.59 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.56 Total: -33.00 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -4.14 Total: 16.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -26.99 -7.02 -34.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003210.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.553 kcal (2) G-P(sol) polarization free energy of solvation -26.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds