Wall clock time and date at job start Tue Mar 31 2020 06:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.46823 * 2 1 4 4 C 1.52993 * 109.47124 * 239.99737 * 2 1 3 5 5 C 1.50702 * 109.46875 * 64.99879 * 4 2 1 6 6 O 1.21293 * 120.00061 * 0.02562 * 5 4 2 7 7 N 1.34781 * 120.00159 * 179.97438 * 5 4 2 8 8 C 1.37095 * 120.00332 * 180.02562 * 7 5 4 9 9 H 1.08001 * 119.99856 * 138.36268 * 8 7 5 10 10 C 1.38953 * 119.99853 * 318.36914 * 8 7 5 11 11 N 1.31411 * 120.00117 * 169.23116 * 10 8 7 12 12 Si 1.86795 * 120.00054 * 349.22993 * 10 8 7 13 13 H 1.48503 * 109.47589 * 95.80709 * 12 10 8 14 14 H 1.48505 * 109.47376 * 215.81087 * 12 10 8 15 15 H 1.48507 * 109.47363 * 335.80831 * 12 10 8 16 16 C 1.46500 * 119.99685 * 0.02562 * 7 5 4 17 17 C 1.54960 * 110.92441 * 123.20005 * 16 7 5 18 18 C 1.54264 * 104.16372 * 156.29194 * 17 16 7 19 19 C 1.53878 * 106.63996 * 336.44974 * 18 17 16 20 20 C 1.54264 * 106.59606 * 359.97051 * 19 18 17 21 21 C 1.53001 * 109.47149 * 119.99978 * 2 1 3 22 22 C 1.52992 * 109.47201 * 180.02562 * 21 2 1 23 23 C 1.53007 * 109.46962 * 300.00075 * 21 2 1 24 24 C 1.53006 * 109.47039 * 59.99877 * 21 2 1 25 25 H 1.09003 * 109.47166 * 180.02562 * 1 2 3 26 26 H 1.09009 * 109.47179 * 300.00017 * 1 2 3 27 27 H 1.08996 * 109.47518 * 59.99683 * 1 2 3 28 28 H 1.08998 * 109.47455 * 305.00651 * 4 2 1 29 29 H 1.09001 * 109.47302 * 185.00174 * 4 2 1 30 30 H 0.96990 * 120.00012 * 179.97438 * 11 10 8 31 31 H 1.08996 * 110.67609 * 359.89010 * 16 7 5 32 32 H 1.09009 * 110.47606 * 37.63983 * 17 16 7 33 33 H 1.08999 * 110.53176 * 274.97861 * 17 16 7 34 34 H 1.08999 * 110.03724 * 217.13667 * 18 17 16 35 35 H 1.09003 * 110.03203 * 95.75352 * 18 17 16 36 36 H 1.09000 * 110.03182 * 119.25746 * 19 18 17 37 37 H 1.09001 * 110.02995 * 240.63784 * 19 18 17 38 38 H 1.09008 * 110.48249 * 142.29140 * 20 19 18 39 39 H 1.08998 * 110.48719 * 264.79619 * 20 19 18 40 40 H 1.09003 * 109.47196 * 59.99748 * 22 21 2 41 41 H 1.09004 * 109.47548 * 179.97438 * 22 21 2 42 42 H 1.09001 * 109.47367 * 299.99808 * 22 21 2 43 43 H 1.08997 * 109.47015 * 59.99947 * 23 21 2 44 44 H 1.09004 * 109.46804 * 180.02562 * 23 21 2 45 45 H 1.08994 * 109.46966 * 299.99762 * 23 21 2 46 46 H 1.08993 * 109.46812 * 59.99895 * 24 21 2 47 47 H 1.09002 * 109.47027 * 180.02562 * 24 21 2 48 48 H 1.08995 * 109.47239 * 299.99762 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4765 6 8 1.0116 1.0875 -2.3632 7 7 1.9852 -0.3914 -3.7001 8 6 1.6230 0.3168 -4.8166 9 1 2.3240 0.4400 -5.6290 10 6 0.3540 0.8763 -4.9031 11 7 0.0749 1.7265 -5.8654 12 14 -0.9552 0.4199 -3.6513 13 1 -0.9848 1.4391 -2.5717 14 1 -2.2809 0.3668 -4.3184 15 1 -0.6409 -0.9094 -3.0685 16 6 2.7463 -1.6357 -3.8369 17 6 1.9947 -2.6478 -4.7381 18 6 3.1061 -3.5740 -5.2737 19 6 4.4196 -2.7761 -5.1973 20 6 4.0612 -1.3919 -4.6184 21 6 2.0400 -0.7212 1.2493 22 6 3.5700 -0.7207 1.2496 23 6 1.5300 0.0001 2.4985 24 6 1.5300 -2.1638 1.2493 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.6053 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2055 30 1 -0.8110 2.1167 -5.9260 31 1 2.9532 -2.0699 -2.8588 32 1 1.4992 -2.1315 -5.5604 33 1 1.2723 -3.2173 -4.1535 34 1 2.8964 -3.8500 -6.3072 35 1 3.1764 -4.4690 -4.6555 36 1 5.1270 -3.2835 -4.5413 37 1 4.8478 -2.6656 -6.1935 38 1 4.8458 -1.0448 -3.9460 39 1 3.9023 -0.6721 -5.4213 40 1 3.9329 0.3071 1.2498 41 1 3.9334 -1.2341 2.1398 42 1 3.9337 -1.2343 0.3596 43 1 0.4400 0.0000 2.4985 44 1 1.8937 -0.5135 3.3885 45 1 1.8933 1.0276 2.4985 46 1 1.8933 -2.6775 0.3593 47 1 1.8930 -2.6775 2.1395 48 1 0.4400 -2.1638 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078003211.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:30 Heat of formation + Delta-G solvation = -52.961862 kcal Electronic energy + Delta-G solvation = -24556.844097 eV Core-core repulsion = 21418.139294 eV Total energy + Delta-G solvation = -3138.704803 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.75209 -38.19189 -36.94775 -33.69198 -32.02197 -31.25320 -28.59634 -28.21142 -27.23882 -27.12305 -26.45902 -24.24558 -22.30630 -20.31043 -19.88179 -19.26463 -17.78070 -17.09726 -16.21106 -15.55959 -15.18032 -14.71215 -14.28361 -14.21792 -13.99688 -13.72110 -13.49255 -13.03573 -12.86247 -12.78166 -12.43942 -12.20313 -11.87356 -11.75650 -11.70249 -11.60981 -11.26090 -11.08560 -10.96476 -10.90959 -10.86724 -10.66786 -10.54759 -10.27449 -10.10570 -10.06820 -9.99647 -9.88729 -9.75412 -9.65488 -8.53753 -8.20528 -7.51085 -6.07349 -3.91068 3.33237 3.54279 3.74745 4.00894 4.42535 4.68050 4.88932 4.93172 4.96893 5.09484 5.12527 5.23693 5.37291 5.44589 5.55250 5.58732 5.70034 5.72515 5.74874 5.79850 5.85948 5.91627 5.94789 5.98224 6.01412 6.02349 6.06647 6.09727 6.12365 6.18141 6.23818 6.27521 6.29668 6.30682 6.35382 6.43459 6.44983 6.60860 6.72572 6.80140 6.82093 6.96486 7.01288 7.92024 8.03292 8.84275 8.97524 9.50002 9.86618 10.94565 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.007902 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.790569 B = 3542.420052 C = 4865.643989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.059 4.059 3 H 0.077 0.923 4 C -0.133 4.133 5 C 0.445 3.555 6 O -0.543 6.543 7 N -0.456 5.456 8 C -0.337 4.337 9 H 0.095 0.905 10 C 0.076 3.924 11 N -0.878 5.878 12 Si 0.952 3.048 13 H -0.257 1.257 14 H -0.330 1.330 15 H -0.292 1.292 16 C 0.128 3.872 17 C -0.131 4.131 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.067 4.067 22 C -0.143 4.143 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.045 0.955 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.270 0.730 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.054 0.946 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -10.288 10.921 16.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.078 4.078 3 H 0.095 0.905 4 C -0.173 4.173 5 C 0.236 3.764 6 O -0.428 6.428 7 N -0.176 5.176 8 C -0.463 4.463 9 H 0.112 0.888 10 C -0.131 4.131 11 N -0.514 5.514 12 Si 0.789 3.211 13 H -0.185 1.185 14 H -0.263 1.263 15 H -0.219 1.219 16 C 0.023 3.977 17 C -0.170 4.170 18 C -0.158 4.158 19 C -0.158 4.158 20 C -0.169 4.169 21 C -0.067 4.067 22 C -0.200 4.200 23 C -0.197 4.197 24 C -0.201 4.201 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.864 -9.658 10.854 15.667 hybrid contribution -0.579 -0.324 0.422 0.786 sum 5.285 -9.982 11.276 15.960 Atomic orbital electron populations 1.22195 0.95456 1.01130 1.03189 1.20825 0.96091 0.99373 0.91528 0.90505 1.21787 1.01668 0.99749 0.94097 1.20451 0.84369 0.87015 0.84551 1.90330 1.41404 1.25987 1.85117 1.43705 1.49401 1.19193 1.05254 1.18753 0.98906 1.31996 0.96690 0.88793 1.25467 0.98113 0.93609 0.95923 1.69702 1.22109 1.26606 1.32989 0.85602 0.76561 0.78590 0.80300 1.18482 1.26339 1.21922 1.22117 0.91776 0.86117 0.97726 1.22656 0.97194 0.96413 1.00693 1.22059 0.95189 0.97885 1.00716 1.22056 0.97116 0.96099 1.00537 1.22629 0.96640 0.97035 1.00558 1.20594 0.95253 0.95503 0.95378 1.21932 0.94950 1.01767 1.01347 1.21894 1.01275 1.00071 0.96500 1.21970 1.01318 0.95608 1.01240 0.93613 0.93251 0.90052 0.90498 0.90005 0.92022 0.90447 0.89326 0.92624 0.92158 0.92582 0.92524 0.92185 0.92447 0.89931 0.92685 0.93154 0.92336 0.92375 0.93223 0.92780 0.92479 0.93264 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 8.23 37.16 0.31 -2.58 16 2 C -0.06 -0.98 1.40 -90.62 -0.13 -1.10 16 3 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 4 C -0.13 -2.34 2.77 -27.89 -0.08 -2.41 16 5 C 0.44 10.33 5.30 -10.98 -0.06 10.28 16 6 O -0.54 -14.58 9.01 5.55 0.05 -14.53 16 7 N -0.46 -10.69 2.31 -105.58 -0.24 -10.93 16 8 C -0.34 -9.35 8.26 -14.93 -0.12 -9.47 16 9 H 0.09 2.73 6.74 -52.49 -0.35 2.38 16 10 C 0.08 2.25 5.09 -17.47 -0.09 2.16 16 11 N -0.88 -27.14 13.96 55.50 0.77 -26.36 16 12 Si 0.95 25.90 22.89 -169.99 -3.89 22.01 16 13 H -0.26 -7.23 5.57 56.52 0.31 -6.92 16 14 H -0.33 -9.04 7.11 56.52 0.40 -8.63 16 15 H -0.29 -7.62 6.76 56.52 0.38 -7.24 16 16 C 0.13 2.35 3.20 -65.90 -0.21 2.14 16 17 C -0.13 -2.30 6.38 -25.03 -0.16 -2.46 16 18 C -0.12 -1.66 6.80 -25.61 -0.17 -1.84 16 19 C -0.12 -1.62 6.80 -25.61 -0.17 -1.80 16 20 C -0.13 -2.17 6.36 -25.07 -0.16 -2.33 16 21 C -0.07 -0.85 0.57 -154.50 -0.09 -0.94 16 22 C -0.14 -1.64 8.13 37.15 0.30 -1.33 16 23 C -0.14 -1.62 8.12 37.16 0.30 -1.32 16 24 C -0.14 -1.69 7.77 37.16 0.29 -1.40 16 25 H 0.04 0.75 6.43 -51.93 -0.33 0.41 16 26 H 0.05 0.77 6.43 -51.92 -0.33 0.43 16 27 H 0.08 1.79 3.81 -51.93 -0.20 1.59 16 28 H 0.08 1.27 6.37 -51.93 -0.33 0.94 16 29 H 0.08 1.27 5.83 -51.93 -0.30 0.97 16 30 H 0.27 7.94 8.31 -40.82 -0.34 7.60 16 31 H 0.08 1.25 5.89 -51.93 -0.31 0.94 16 32 H 0.09 1.82 7.21 -51.92 -0.37 1.45 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 39 H 0.08 1.60 6.45 -51.93 -0.34 1.26 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 43 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 47 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -31.79 339.51 -6.95 -38.73 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.51 Total: 0.37 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -0.24 Total: -14.41 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.53 Total: -37.29 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.05 Total: -14.53 kcal Atomic # 14 Polarization: 25.90 SS G_CDS: -3.89 Total: 22.01 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.79 -6.95 -38.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078003211.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.229 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds