Wall clock time and date at job start Tue Mar 31 2020 06:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46506 * 109.47074 * 119.99711 * 2 1 3 13 13 C 1.46502 * 119.99912 * 60.00021 * 12 2 1 14 14 C 1.34775 * 120.00185 * 240.00282 * 12 2 1 15 15 O 1.21286 * 119.99739 * 359.97438 * 14 12 2 16 16 C 1.50697 * 120.00215 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47364 * 179.97438 * 16 14 12 18 18 H 1.08999 * 109.47456 * 304.99928 * 17 16 14 19 19 C 1.53009 * 109.46950 * 65.00012 * 17 16 14 20 20 C 1.53000 * 109.47267 * 184.99701 * 17 16 14 21 21 C 1.52996 * 109.47267 * 179.97438 * 20 17 16 22 22 C 1.53000 * 109.47267 * 179.97438 * 21 20 17 23 23 C 1.53000 * 109.46921 * 60.00685 * 22 21 20 24 24 C 1.53008 * 109.46805 * 299.99558 * 23 22 21 25 25 C 1.52999 * 109.46908 * 60.00288 * 20 17 16 26 26 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 28 28 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.09005 * 109.46997 * 89.99685 * 13 12 2 31 31 H 1.08997 * 109.47497 * 210.00034 * 13 12 2 32 32 H 1.09004 * 109.47127 * 330.00532 * 13 12 2 33 33 H 1.08999 * 109.46995 * 300.00028 * 16 14 12 34 34 H 1.09000 * 109.47262 * 59.99668 * 16 14 12 35 35 H 1.08997 * 109.47162 * 179.97438 * 19 17 16 36 36 H 1.09001 * 109.46930 * 299.99996 * 19 17 16 37 37 H 1.09000 * 109.46487 * 60.00126 * 19 17 16 38 38 H 1.08999 * 109.47068 * 300.00465 * 20 17 16 39 39 H 1.08999 * 109.47456 * 300.00227 * 21 20 17 40 40 H 1.09006 * 109.47042 * 60.00160 * 21 20 17 41 41 H 1.08991 * 109.47247 * 300.00204 * 22 21 20 42 42 H 1.09001 * 109.46905 * 179.97438 * 22 21 20 43 43 H 1.08994 * 109.47617 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.47424 * 59.99235 * 23 22 21 45 45 H 1.08991 * 109.47186 * 300.00372 * 24 23 22 46 46 H 1.08996 * 109.46997 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47133 * 300.00325 * 25 20 17 48 48 H 1.09004 * 109.46984 * 59.99733 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 7 2.0183 -0.6906 1.1963 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.0865 1.1255 1.8912 16 6 3.2950 -0.7457 3.3142 17 6 4.1455 0.2157 4.1467 18 1 4.9424 0.6260 3.5264 19 6 3.2662 1.3548 4.6668 20 6 4.7567 -0.5377 5.3297 21 6 5.6078 0.4236 6.1618 22 6 6.2185 -0.3297 7.3453 23 6 7.0972 -1.4694 6.8257 24 6 6.2461 -2.4308 5.9935 25 6 5.6360 -1.6767 4.8096 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 1.9028 -0.5285 -4.4375 30 1 2.4157 -2.7377 0.9718 31 1 1.6237 -2.2852 2.5003 32 1 0.6904 -2.3002 0.9847 33 1 2.4470 -1.0879 3.9074 34 1 3.9003 -1.6024 3.0180 35 1 3.8721 2.0395 5.2603 36 1 2.8308 1.8915 3.8240 37 1 2.4694 0.9443 5.2871 38 1 3.9599 -0.9481 5.9500 39 1 6.4047 0.8335 5.5413 40 1 4.9818 1.2353 6.5324 41 1 5.4214 -0.7393 7.9656 42 1 6.8252 0.3551 7.9378 43 1 7.5326 -2.0058 7.6686 44 1 7.8942 -1.0598 6.2052 45 1 5.4490 -2.8404 6.6139 46 1 6.8721 -3.2425 5.6230 47 1 5.0301 -2.3617 4.2165 48 1 6.4328 -1.2664 4.1893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420474.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:52 Heat of formation + Delta-G solvation = -67.059582 kcal Electronic energy + Delta-G solvation = -23322.415714 eV Core-core repulsion = 20183.099588 eV Total energy + Delta-G solvation = -3139.316126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.78260 -38.61500 -35.72695 -34.46363 -32.75466 -31.05353 -30.60552 -29.32149 -27.39190 -26.17140 -25.08307 -23.49797 -22.50144 -21.31516 -19.97208 -19.64526 -18.17353 -16.99778 -16.30955 -15.74718 -15.32790 -15.01928 -14.73272 -14.26655 -14.09418 -13.87232 -13.33495 -13.27769 -13.16734 -12.78678 -12.44304 -12.42817 -12.21876 -12.08704 -11.92614 -11.66838 -11.51780 -11.40014 -11.21664 -11.16505 -11.02202 -10.91467 -10.66270 -10.59876 -10.37182 -10.12743 -10.01703 -9.86969 -9.63194 -9.30169 -8.85863 -8.62345 -7.66615 -6.13505 -4.13715 3.23835 3.35916 3.37492 3.40481 3.86523 4.36237 4.55972 4.59740 4.65856 4.98541 5.05538 5.07377 5.19887 5.26764 5.31145 5.39770 5.42961 5.46350 5.54584 5.55842 5.64124 5.76940 5.83944 5.85837 5.88330 5.94918 6.01504 6.05703 6.06813 6.13258 6.13892 6.17754 6.22588 6.27860 6.33458 6.34397 6.37732 6.51422 6.61052 6.69101 6.86364 7.15928 7.39899 7.65867 8.23958 8.51412 8.87253 8.99438 9.48039 10.99381 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.030796 B = 0.003714 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.996798 B = 7538.099282 C = 7834.443771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.229 3.771 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.263 1.263 11 H -0.294 1.294 12 N -0.590 5.590 13 C 0.087 3.913 14 C 0.505 3.495 15 O -0.552 6.552 16 C -0.137 4.137 17 C -0.069 4.069 18 H 0.077 0.923 19 C -0.153 4.153 20 C -0.080 4.080 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.120 4.120 26 H 0.055 0.945 27 H 0.032 0.968 28 H 0.049 0.951 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 -2.574 20.794 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.127 3.873 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.204 1.204 10 H -0.188 1.188 11 H -0.222 1.222 12 N -0.321 5.321 13 C -0.056 4.056 14 C 0.293 3.707 15 O -0.431 6.431 16 C -0.177 4.177 17 C -0.088 4.088 18 H 0.095 0.905 19 C -0.210 4.210 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.157 4.157 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.096 0.904 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.364 -1.978 20.469 21.023 hybrid contribution -0.662 0.489 -0.386 0.909 sum 3.701 -1.490 20.083 20.476 Atomic orbital electron populations 1.22457 0.99290 1.00973 0.99193 1.19258 0.89830 0.95224 0.83029 0.92021 1.21178 1.32560 1.14154 0.88542 0.90438 1.24877 0.95708 0.96583 0.95646 1.69880 1.45318 1.40235 0.97951 0.86909 0.80386 0.83888 0.77452 1.20449 1.18813 1.22169 1.47895 1.49484 1.11777 1.22973 1.21579 1.01720 0.82907 0.99435 1.20512 0.78663 0.87113 0.84420 1.90598 1.58291 1.17279 1.76950 1.21827 1.00677 0.99774 0.95374 1.20900 0.97816 0.94961 0.95138 0.90457 1.21986 0.99051 0.98270 1.01650 1.21198 0.97172 0.95332 0.96174 1.21632 0.99211 0.97909 0.96555 1.21534 0.99032 0.97346 0.97714 1.21541 0.98185 0.96745 0.99282 1.21538 0.99164 0.97752 0.97160 1.21699 0.99284 0.97329 0.97412 0.92596 0.94869 0.93218 0.92479 0.92919 0.92701 0.90976 0.89727 0.89172 0.93071 0.90445 0.93803 0.91426 0.91987 0.91680 0.92235 0.92403 0.92513 0.92100 0.92198 0.92259 0.91586 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.18 16 2 C 0.23 5.56 2.23 -69.08 -0.15 5.41 16 3 H 0.06 1.67 5.96 -51.93 -0.31 1.37 16 4 C -0.53 -14.69 8.95 -34.44 -0.31 -15.00 16 5 H 0.08 2.33 7.89 -52.49 -0.41 1.91 16 6 C 0.07 2.14 5.45 -17.82 -0.10 2.04 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 8 Si 0.88 22.08 24.37 -169.99 -4.14 17.94 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 10 H -0.26 -6.51 6.53 56.52 0.37 -6.15 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 N -0.59 -12.11 2.75 -175.25 -0.48 -12.59 16 13 C 0.09 1.42 9.48 59.85 0.57 1.99 16 14 C 0.51 9.88 7.39 -10.99 -0.08 9.80 16 15 O -0.55 -12.72 13.29 5.55 0.07 -12.64 16 16 C -0.14 -1.91 3.51 -27.89 -0.10 -2.01 16 17 C -0.07 -0.91 1.62 -90.62 -0.15 -1.06 16 18 H 0.08 1.18 7.96 -51.93 -0.41 0.76 16 19 C -0.15 -2.04 8.58 37.16 0.32 -1.72 16 20 C -0.08 -0.83 1.78 -90.62 -0.16 -0.99 16 21 C -0.12 -1.11 4.85 -26.73 -0.13 -1.24 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 24 C -0.12 -1.01 5.93 -26.70 -0.16 -1.17 16 25 C -0.12 -1.19 4.86 -26.70 -0.13 -1.32 16 26 H 0.06 1.12 6.66 -51.93 -0.35 0.78 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 29 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 32 H 0.07 1.17 6.43 -51.93 -0.33 0.84 16 33 H 0.08 1.02 7.40 -51.93 -0.38 0.63 16 34 H 0.09 1.16 6.14 -51.93 -0.32 0.84 16 35 H 0.05 0.61 6.43 -51.93 -0.33 0.28 16 36 H 0.08 1.29 5.95 -51.93 -0.31 0.98 16 37 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.07 0.65 6.32 -51.93 -0.33 0.33 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 349.29 15.07 5.26 5.26 Total: -1.00 -31.56 349.29 -7.67 -39.22 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.58 Total: -0.04 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: -0.57 Total: -10.73 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.29 Total: -39.01 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.64 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.14 Total: 17.94 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.56 -7.67 -39.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420474.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.835 kcal (2) G-P(sol) polarization free energy of solvation -31.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds