Wall clock time and date at job start Tue Mar 31 2020 06:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47438 * 0.02562 * 8 6 4 10 10 H 1.48491 * 109.47045 * 120.00577 * 8 6 4 11 11 H 1.48501 * 109.46950 * 240.00369 * 8 6 4 12 12 N 1.46505 * 109.47212 * 120.00008 * 2 1 3 13 13 C 1.46498 * 119.99673 * 60.00290 * 12 2 1 14 14 C 1.34768 * 119.99967 * 240.00033 * 12 2 1 15 15 O 1.21282 * 120.00139 * 359.97438 * 14 12 2 16 16 C 1.50701 * 119.99974 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.47279 * 179.97438 * 16 14 12 18 18 H 1.09007 * 109.46680 * 55.00534 * 17 16 14 19 19 C 1.52998 * 109.47516 * 295.00160 * 17 16 14 20 20 C 1.53002 * 109.47484 * 174.99920 * 17 16 14 21 21 C 1.52998 * 109.46940 * 300.00592 * 20 17 16 22 22 C 1.53000 * 109.46852 * 179.97438 * 21 20 17 23 23 C 1.52999 * 109.47260 * 60.00035 * 22 21 20 24 24 C 1.52995 * 109.46990 * 300.00102 * 23 22 21 25 25 C 1.52994 * 109.47430 * 180.02562 * 20 17 16 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.47421 * 89.99857 * 13 12 2 31 31 H 1.09007 * 109.46720 * 209.99867 * 13 12 2 32 32 H 1.09003 * 109.47218 * 329.99648 * 13 12 2 33 33 H 1.08994 * 109.46996 * 299.99989 * 16 14 12 34 34 H 1.09007 * 109.46947 * 60.00244 * 16 14 12 35 35 H 1.08996 * 109.47022 * 300.00055 * 19 17 16 36 36 H 1.09005 * 109.46787 * 60.00237 * 19 17 16 37 37 H 1.09004 * 109.47170 * 179.97438 * 19 17 16 38 38 H 1.08996 * 109.46751 * 60.00130 * 20 17 16 39 39 H 1.08996 * 109.47022 * 299.99372 * 21 20 17 40 40 H 1.09004 * 109.47170 * 59.99769 * 21 20 17 41 41 H 1.08996 * 109.47241 * 299.99784 * 22 21 20 42 42 H 1.09001 * 109.47123 * 179.97438 * 22 21 20 43 43 H 1.09000 * 109.47480 * 179.97438 * 23 22 21 44 44 H 1.09007 * 109.46858 * 60.00041 * 23 22 21 45 45 H 1.09001 * 109.46931 * 299.99392 * 24 23 22 46 46 H 1.09004 * 109.47000 * 179.97438 * 24 23 22 47 47 H 1.09004 * 109.47128 * 299.99698 * 25 20 17 48 48 H 1.08996 * 109.47497 * 60.00036 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 3.1454 -2.2876 -3.6039 10 1 1.1659 -1.5865 -4.8160 11 1 3.1464 -0.1873 -4.8165 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0932 1.4279 14 6 2.7931 -0.0357 2.0833 15 8 3.0865 1.1254 1.8912 16 6 3.2950 -0.7459 3.3141 17 6 4.1456 0.2155 4.1465 18 1 3.5680 1.1130 4.3678 19 6 5.4009 0.5979 3.3597 20 6 4.5517 -0.4652 5.4552 21 6 3.2965 -0.8476 6.2420 22 6 3.7026 -1.5288 7.5504 23 6 4.5534 -0.5678 8.3831 24 6 5.8085 -0.1854 7.5963 25 6 5.4018 0.4964 6.2879 26 1 -0.3634 0.5137 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.7092 1.1618 -3.4843 30 1 2.4157 -2.7377 0.9716 31 1 1.6238 -2.2853 2.5002 32 1 0.6904 -2.3002 0.9846 33 1 2.4471 -1.0880 3.9072 34 1 3.9005 -1.6026 3.0177 35 1 5.9784 -0.2996 3.1384 36 1 5.1116 1.0830 2.4274 37 1 6.0066 1.2832 3.9527 38 1 5.1292 -1.3627 5.2339 39 1 2.7190 0.0499 6.4633 40 1 2.6905 -1.5326 5.6489 41 1 4.2799 -2.4264 7.3288 42 1 2.8083 -1.8009 8.1111 43 1 4.8423 -1.0530 9.3154 44 1 3.9759 0.3298 8.6048 45 1 6.3859 -1.0830 7.3747 46 1 6.4144 0.4996 8.1894 47 1 6.2961 0.7692 5.7276 48 1 4.8240 1.3937 6.5092 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420480.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:56 Heat of formation + Delta-G solvation = -75.799689 kcal Electronic energy + Delta-G solvation = -23255.512483 eV Core-core repulsion = 20115.817358 eV Total energy + Delta-G solvation = -3139.695125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.68410 -38.50865 -35.53112 -34.37945 -32.81811 -31.00585 -29.98334 -29.04440 -27.20432 -25.99776 -25.17343 -23.41873 -22.47730 -21.16684 -19.95289 -19.60870 -18.09390 -16.66614 -16.19421 -15.54796 -15.32155 -14.93252 -14.39480 -14.30654 -14.10767 -13.81446 -13.34393 -13.13275 -13.06333 -12.58392 -12.43263 -12.34820 -11.97993 -11.69322 -11.55983 -11.50331 -11.37098 -11.20193 -11.06699 -10.94527 -10.91613 -10.76877 -10.66652 -10.55465 -10.33458 -10.19622 -10.14925 -9.96987 -9.83151 -9.12616 -8.73696 -8.39519 -7.50682 -6.04916 -4.12617 3.26835 3.34630 3.37585 3.50578 4.03788 4.41610 4.58427 4.61958 4.67812 5.02098 5.08547 5.15961 5.26076 5.29598 5.33659 5.42045 5.43814 5.49505 5.56425 5.64548 5.70262 5.83597 5.88703 5.90159 5.93393 5.98509 6.06260 6.07304 6.13819 6.16189 6.16209 6.22516 6.33648 6.36386 6.42694 6.66275 6.78860 6.82296 6.85810 7.09841 7.49991 7.57585 7.75688 8.05565 8.23904 8.61511 8.87856 9.16195 9.54276 11.00349 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.032781 B = 0.003514 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.945205 B = 7966.204814 C = 8189.762336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.502 3.498 15 O -0.552 6.552 16 C -0.138 4.138 17 C -0.068 4.068 18 H 0.075 0.925 19 C -0.153 4.153 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.262 0.738 30 H 0.047 0.953 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.049 0.951 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -5.632 18.745 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.328 5.328 13 C -0.056 4.056 14 C 0.290 3.710 15 O -0.431 6.431 16 C -0.178 4.178 17 C -0.087 4.087 18 H 0.094 0.906 19 C -0.210 4.210 20 C -0.100 4.100 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.153 4.153 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.446 -4.912 18.473 19.876 hybrid contribution 0.209 -0.688 -0.946 1.189 sum 5.656 -5.601 17.526 19.249 Atomic orbital electron populations 1.22091 0.98414 0.99261 1.00775 1.18906 0.90741 0.94539 0.80153 0.91937 1.21376 1.31566 1.12872 0.90364 0.92318 1.24901 0.95007 0.95000 0.98964 1.69893 1.36559 1.22675 1.23570 0.86453 0.78588 0.79600 0.82831 1.19841 1.20970 1.20924 1.48250 1.49233 1.11560 1.23710 1.21528 1.01436 0.83414 0.99243 1.20464 0.78936 0.87186 0.84453 1.90599 1.58123 1.17288 1.77103 1.21837 1.00589 0.99656 0.95671 1.20880 0.96709 0.97939 0.93131 0.90649 1.21986 0.96433 1.00789 1.01812 1.21208 0.96093 0.98400 0.94258 1.21680 0.97579 1.00615 0.95745 1.21531 0.99362 0.98382 0.96353 1.21538 0.96760 0.99447 0.97968 1.21545 0.97235 1.00337 0.96539 1.21637 0.99893 0.98356 0.95408 0.97046 0.88871 0.95185 0.92797 0.93474 0.93017 0.91052 0.89565 0.89810 0.93755 0.90211 0.93180 0.91393 0.91963 0.91685 0.92173 0.92339 0.92529 0.92144 0.92205 0.92401 0.91604 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.52 -14.33 8.37 -34.44 -0.29 -14.62 16 5 H 0.06 1.59 7.65 -52.49 -0.40 1.19 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.60 -12.81 2.75 -175.26 -0.48 -13.29 16 13 C 0.09 1.49 9.48 59.85 0.57 2.05 16 14 C 0.50 10.31 7.39 -10.99 -0.08 10.22 16 15 O -0.55 -13.36 13.29 5.56 0.07 -13.29 16 16 C -0.14 -2.03 3.51 -27.88 -0.10 -2.12 16 17 C -0.07 -0.93 1.62 -90.62 -0.15 -1.08 16 18 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 19 C -0.15 -2.25 8.58 37.16 0.32 -1.93 16 20 C -0.08 -0.87 1.78 -90.62 -0.16 -1.03 16 21 C -0.12 -1.17 4.86 -26.73 -0.13 -1.30 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 24 C -0.12 -1.01 5.92 -26.71 -0.16 -1.17 16 25 C -0.12 -1.15 4.85 -26.71 -0.13 -1.28 16 26 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 29 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.68 6.44 -51.92 -0.33 0.35 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 33 H 0.09 1.10 5.44 -51.93 -0.28 0.82 16 34 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 35 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 1.47 5.95 -51.93 -0.31 1.16 16 37 H 0.05 0.65 6.43 -51.93 -0.33 0.31 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 356.11 15.07 5.37 5.37 Total: -1.00 -30.26 356.11 -8.72 -38.98 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.72 Total: 0.46 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.57 Total: -9.66 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.15 Total: -38.09 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.07 Total: -13.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.26 -8.72 -38.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420480.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.817 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds