Wall clock time and date at job start Tue Mar 31 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47428 * 2 1 4 4 C 1.46497 * 119.99733 * 81.83746 * 3 2 1 5 5 C 1.50700 * 109.47434 * 89.99984 * 4 3 2 6 6 H 1.07995 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00207 * 179.72301 * 5 4 3 8 8 N 1.31520 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47078 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47330 * 120.00031 * 9 7 5 12 12 H 1.48495 * 109.47450 * 240.00380 * 9 7 5 13 13 C 1.34769 * 119.99997 * 261.83698 * 3 2 1 14 14 O 1.21288 * 119.99567 * 180.74679 * 13 3 2 15 15 C 1.50697 * 120.00389 * 0.74671 * 13 3 2 16 16 C 1.52999 * 110.43396 * 57.00841 * 15 13 3 17 17 C 1.53006 * 109.47281 * 53.77864 * 16 15 13 18 18 C 1.52998 * 109.46765 * 67.09814 * 17 16 15 19 19 C 1.52996 * 109.47257 * 187.09767 * 17 16 15 20 20 C 1.54889 * 110.48567 * 294.32537 * 15 13 3 21 21 C 1.54893 * 102.74587 * 279.25980 * 20 15 13 22 22 C 1.54258 * 104.19754 * 322.05924 * 21 20 15 23 23 C 1.53873 * 106.60237 * 23.60936 * 22 21 20 24 24 H 1.08998 * 109.46600 * 300.82246 * 1 2 3 25 25 H 1.09002 * 109.47275 * 60.82233 * 1 2 3 26 26 H 1.08997 * 109.46953 * 180.82589 * 1 2 3 27 27 H 1.09005 * 109.47292 * 240.00028 * 2 1 3 28 28 H 1.08999 * 109.47235 * 120.00490 * 2 1 3 29 29 H 1.09008 * 109.47053 * 329.99848 * 4 3 2 30 30 H 1.09002 * 109.47245 * 210.00543 * 4 3 2 31 31 H 0.96999 * 119.99888 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47164 * 173.78055 * 16 15 13 33 33 H 1.09004 * 109.47374 * 293.77761 * 16 15 13 34 34 H 1.08996 * 109.46732 * 307.10098 * 17 16 15 35 35 H 1.09001 * 109.47368 * 50.81865 * 18 17 16 36 36 H 1.09006 * 109.46917 * 170.81283 * 18 17 16 37 37 H 1.08998 * 109.47372 * 290.81119 * 18 17 16 38 38 H 1.09006 * 109.46825 * 60.00153 * 19 17 16 39 39 H 1.08996 * 109.47169 * 179.97438 * 19 17 16 40 40 H 1.09001 * 109.47414 * 300.00296 * 19 17 16 41 41 H 1.08995 * 110.75738 * 37.57970 * 20 15 13 42 42 H 1.09003 * 110.75389 * 160.94847 * 20 15 13 43 43 H 1.08999 * 110.48249 * 203.37843 * 21 20 15 44 44 H 1.08997 * 110.48037 * 80.74114 * 21 20 15 45 45 H 1.08999 * 110.03161 * 264.32095 * 22 21 20 46 46 H 1.09000 * 110.03168 * 142.89836 * 22 21 20 47 47 H 1.08999 * 110.03164 * 240.71989 * 23 22 21 48 48 H 1.08997 * 110.03427 * 119.28475 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0927 2.1318 1.2559 5 6 3.4442 1.9204 1.8883 6 1 4.1748 1.2902 1.4030 7 6 3.7501 2.5363 3.0833 8 7 2.8623 3.3080 3.6715 9 14 5.4255 2.2748 3.8668 10 1 6.2360 1.3705 3.0120 11 1 6.1186 3.5812 4.0010 12 1 5.2541 1.6651 5.2100 13 6 2.3993 1.9613 -1.1553 14 8 2.8164 3.1002 -1.1533 15 6 2.3070 1.1949 -2.4496 16 6 0.8732 0.7160 -2.6857 17 6 -0.0831 1.9073 -2.6002 18 6 0.1768 2.8550 -3.7729 19 6 -1.5277 1.4070 -2.6594 20 6 3.2875 -0.0041 -2.4407 21 6 4.6401 0.6580 -2.8033 22 6 4.2694 1.7253 -3.8535 23 6 2.7860 2.0668 -3.6287 24 1 -0.3632 0.5266 0.8825 25 1 -0.3634 0.5010 -0.8973 26 1 -0.3633 -1.0275 0.0148 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3151 1.7819 1.9349 30 1 1.9481 3.1932 1.0540 31 1 3.0774 3.7411 4.5124 32 1 0.8000 0.2615 -3.6737 33 1 0.6061 -0.0195 -1.9268 34 1 0.0798 2.4373 -1.6618 35 1 0.1745 2.2893 -4.7046 36 1 -0.6048 3.6140 -3.8068 37 1 1.1458 3.3369 -3.6428 38 1 -1.7128 0.7318 -1.8238 39 1 -2.2090 2.2556 -2.5980 40 1 -1.6906 0.8769 -3.5978 41 1 3.3328 -0.4587 -1.4512 42 1 3.0040 -0.7405 -3.1927 43 1 5.3221 -0.0771 -3.2306 44 1 5.0836 1.1255 -1.9242 45 1 4.4128 1.3265 -4.8577 46 1 4.8829 2.6154 -3.7138 47 1 2.2094 1.8336 -4.5238 48 1 2.6795 3.1226 -3.3798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:10 Heat of formation + Delta-G solvation = -35.013091 kcal Electronic energy + Delta-G solvation = -24935.802321 eV Core-core repulsion = 21797.875835 eV Total energy + Delta-G solvation = -3137.926486 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.69785 -36.92502 -35.95325 -35.01489 -32.76345 -30.38379 -29.99144 -28.78884 -27.06104 -26.75436 -24.98107 -23.24594 -22.95878 -20.66367 -20.08324 -19.90375 -17.89833 -16.38837 -16.32396 -15.75195 -15.36853 -14.87258 -14.71214 -14.14190 -13.86582 -13.65340 -13.17509 -13.07176 -12.85267 -12.59112 -12.27670 -12.15496 -12.04881 -11.82079 -11.73232 -11.52572 -11.16184 -11.13706 -11.03807 -10.90854 -10.74039 -10.56825 -10.49825 -10.37793 -10.25390 -10.11159 -10.01407 -9.92710 -9.90560 -9.55176 -8.62670 -8.40104 -7.55074 -6.00608 -4.04688 3.31113 3.38592 3.42240 3.56254 4.02697 4.47442 4.67875 4.79202 4.83785 5.07191 5.12315 5.20503 5.32772 5.39070 5.40220 5.54914 5.62705 5.66837 5.68198 5.71488 5.79878 5.83948 5.88578 5.91168 5.93958 5.96135 5.98931 6.06062 6.13524 6.16832 6.22539 6.26837 6.32742 6.38124 6.40053 6.49566 6.54411 6.56832 6.71489 6.74244 7.16972 7.51165 7.64738 7.97080 8.29287 8.56012 8.96295 9.23277 9.60573 11.07397 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.006407 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.082818 B = 4369.248979 C = 5073.234455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.091 3.909 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.525 3.475 14 O -0.542 6.542 15 C -0.081 4.081 16 C -0.126 4.126 17 C -0.101 4.101 18 C -0.161 4.161 19 C -0.150 4.150 20 C -0.120 4.120 21 C -0.125 4.125 22 C -0.122 4.122 23 C -0.107 4.107 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.041 0.959 31 H 0.262 0.738 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.360 -8.375 -14.757 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.033 4.033 3 N -0.325 5.325 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.210 1.210 13 C 0.311 3.689 14 O -0.419 6.419 15 C -0.085 4.085 16 C -0.163 4.163 17 C -0.119 4.119 18 C -0.217 4.217 19 C -0.207 4.207 20 C -0.157 4.157 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.145 4.145 24 H 0.079 0.921 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.085 0.915 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.169 -7.645 -14.565 17.243 hybrid contribution 0.893 -0.150 0.696 1.142 sum -4.276 -7.795 -13.869 16.474 Atomic orbital electron populations 1.22850 0.97208 1.01757 1.03961 1.21809 0.93706 0.84846 1.02914 1.48117 1.62511 1.13099 1.08725 1.19214 0.96783 0.92497 0.78739 1.21480 0.99763 1.29198 1.05580 0.92514 1.24929 0.97163 0.95005 0.97059 1.69947 1.34382 1.31213 1.17942 0.86482 0.84208 0.78017 0.78958 1.19838 1.20931 1.21015 1.19951 0.77606 0.86783 0.84541 1.90632 1.46164 1.18747 1.86396 1.21630 0.95934 0.96262 0.94654 1.22359 0.92480 0.98550 1.02906 1.21143 0.94447 0.96369 0.99973 1.22296 1.03020 0.99092 0.97327 1.21964 0.96175 1.01091 1.01508 1.22763 0.94582 0.96276 1.02079 1.22346 0.96813 0.97652 0.99433 1.22120 0.96891 0.98852 0.98114 1.22443 0.94952 1.01025 0.96050 0.92104 0.89845 0.92442 0.89941 0.90773 0.95241 0.94107 0.92877 0.91650 0.88724 0.90626 0.93141 0.93501 0.90517 0.92156 0.92853 0.92949 0.90232 0.90942 0.91999 0.91184 0.92509 0.91903 0.91509 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.80 9.14 37.16 0.34 -2.46 16 2 C 0.09 1.49 5.01 -4.04 -0.02 1.47 16 3 N -0.59 -12.49 2.46 -175.05 -0.43 -12.92 16 4 C 0.25 6.51 5.17 -5.19 -0.03 6.48 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 9 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.52 10.81 4.69 -10.99 -0.05 10.75 16 14 O -0.54 -13.61 15.03 5.55 0.08 -13.53 16 15 C -0.08 -1.24 0.27 -154.00 -0.04 -1.28 16 16 C -0.13 -1.59 3.21 -26.73 -0.09 -1.67 16 17 C -0.10 -1.35 1.83 -90.62 -0.17 -1.51 16 18 C -0.16 -2.02 7.74 37.16 0.29 -1.74 16 19 C -0.15 -1.65 8.96 37.16 0.33 -1.32 16 20 C -0.12 -1.63 4.94 -24.74 -0.12 -1.76 16 21 C -0.12 -1.80 6.61 -25.07 -0.17 -1.96 16 22 C -0.12 -1.68 6.80 -25.62 -0.17 -1.85 16 23 C -0.11 -1.54 3.77 -25.61 -0.10 -1.64 16 24 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 25 H 0.08 1.10 1.59 -51.93 -0.08 1.02 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 1.15 3.14 -51.93 -0.16 0.99 16 28 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.03 0.79 7.87 -51.92 -0.41 0.38 16 30 H 0.04 1.22 7.43 -51.93 -0.39 0.84 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.06 0.70 7.94 -51.93 -0.41 0.29 16 33 H 0.09 1.15 2.99 -51.93 -0.16 1.00 16 34 H 0.08 1.28 6.66 -51.93 -0.35 0.94 16 35 H 0.05 0.54 7.60 -51.93 -0.39 0.15 16 36 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 37 H 0.08 1.09 4.56 -51.93 -0.24 0.86 16 38 H 0.06 0.64 6.17 -51.93 -0.32 0.32 16 39 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 1.16 5.67 -51.93 -0.29 0.86 16 42 H 0.07 0.80 8.06 -51.93 -0.42 0.38 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.07 0.81 6.35 -51.93 -0.33 0.48 16 48 H 0.09 1.46 5.16 -51.93 -0.27 1.19 16 LS Contribution 343.06 15.07 5.17 5.17 Total: -1.00 -32.10 343.06 -7.85 -39.94 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.97 Total: 2.48 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.41 Total: -12.08 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.31 Total: -39.11 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.08 Total: -13.53 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.10 -7.85 -39.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.929 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds