Wall clock time and date at job start Tue Mar 31 2020 06:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46504 * 109.47428 * 2 1 4 4 C 1.46497 * 119.99733 * 81.83746 * 3 2 1 5 5 C 1.50700 * 109.47434 * 89.99984 * 4 3 2 6 6 H 1.07995 * 119.99768 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00207 * 179.72301 * 5 4 3 8 8 N 1.31520 * 119.99926 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00269 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47078 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47330 * 120.00031 * 9 7 5 12 12 H 1.48495 * 109.47450 * 240.00380 * 9 7 5 13 13 C 1.34769 * 119.99997 * 261.83698 * 3 2 1 14 14 O 1.21288 * 119.99567 * 180.74679 * 13 3 2 15 15 C 1.50697 * 120.00389 * 0.74671 * 13 3 2 16 16 C 1.52999 * 110.43396 * 57.00841 * 15 13 3 17 17 C 1.53006 * 109.47281 * 53.77864 * 16 15 13 18 18 C 1.52998 * 109.46765 * 67.09814 * 17 16 15 19 19 C 1.52996 * 109.47257 * 187.09767 * 17 16 15 20 20 C 1.54889 * 110.48567 * 294.32537 * 15 13 3 21 21 C 1.54893 * 102.74587 * 279.25980 * 20 15 13 22 22 C 1.54258 * 104.19754 * 322.05924 * 21 20 15 23 23 C 1.53873 * 106.60237 * 23.60936 * 22 21 20 24 24 H 1.08998 * 109.46600 * 300.82246 * 1 2 3 25 25 H 1.09002 * 109.47275 * 60.82233 * 1 2 3 26 26 H 1.08997 * 109.46953 * 180.82589 * 1 2 3 27 27 H 1.09005 * 109.47292 * 240.00028 * 2 1 3 28 28 H 1.08999 * 109.47235 * 120.00490 * 2 1 3 29 29 H 1.09008 * 109.47053 * 329.99848 * 4 3 2 30 30 H 1.09002 * 109.47245 * 210.00543 * 4 3 2 31 31 H 0.96999 * 119.99888 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47164 * 173.78055 * 16 15 13 33 33 H 1.09004 * 109.47374 * 293.77761 * 16 15 13 34 34 H 1.08996 * 109.46732 * 307.10098 * 17 16 15 35 35 H 1.09001 * 109.47368 * 50.81865 * 18 17 16 36 36 H 1.09006 * 109.46917 * 170.81283 * 18 17 16 37 37 H 1.08998 * 109.47372 * 290.81119 * 18 17 16 38 38 H 1.09006 * 109.46825 * 60.00153 * 19 17 16 39 39 H 1.08996 * 109.47169 * 179.97438 * 19 17 16 40 40 H 1.09001 * 109.47414 * 300.00296 * 19 17 16 41 41 H 1.08995 * 110.75738 * 37.57970 * 20 15 13 42 42 H 1.09003 * 110.75389 * 160.94847 * 20 15 13 43 43 H 1.08999 * 110.48249 * 203.37843 * 21 20 15 44 44 H 1.08997 * 110.48037 * 80.74114 * 21 20 15 45 45 H 1.08999 * 110.03161 * 264.32095 * 22 21 20 46 46 H 1.09000 * 110.03168 * 142.89836 * 22 21 20 47 47 H 1.08999 * 110.03164 * 240.71989 * 23 22 21 48 48 H 1.08997 * 110.03427 * 119.28475 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0927 2.1318 1.2559 5 6 3.4442 1.9204 1.8883 6 1 4.1748 1.2902 1.4030 7 6 3.7501 2.5363 3.0833 8 7 2.8623 3.3080 3.6715 9 14 5.4255 2.2748 3.8668 10 1 6.2360 1.3705 3.0120 11 1 6.1186 3.5812 4.0010 12 1 5.2541 1.6651 5.2100 13 6 2.3993 1.9613 -1.1553 14 8 2.8164 3.1002 -1.1533 15 6 2.3070 1.1949 -2.4496 16 6 0.8732 0.7160 -2.6857 17 6 -0.0831 1.9073 -2.6002 18 6 0.1768 2.8550 -3.7729 19 6 -1.5277 1.4070 -2.6594 20 6 3.2875 -0.0041 -2.4407 21 6 4.6401 0.6580 -2.8033 22 6 4.2694 1.7253 -3.8535 23 6 2.7860 2.0668 -3.6287 24 1 -0.3632 0.5266 0.8825 25 1 -0.3634 0.5010 -0.8973 26 1 -0.3633 -1.0275 0.0148 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.3151 1.7819 1.9349 30 1 1.9481 3.1932 1.0540 31 1 3.0774 3.7411 4.5124 32 1 0.8000 0.2615 -3.6737 33 1 0.6061 -0.0195 -1.9268 34 1 0.0798 2.4373 -1.6618 35 1 0.1745 2.2893 -4.7046 36 1 -0.6048 3.6140 -3.8068 37 1 1.1458 3.3369 -3.6428 38 1 -1.7128 0.7318 -1.8238 39 1 -2.2090 2.2556 -2.5980 40 1 -1.6906 0.8769 -3.5978 41 1 3.3328 -0.4587 -1.4512 42 1 3.0040 -0.7405 -3.1927 43 1 5.3221 -0.0771 -3.2306 44 1 5.0836 1.1255 -1.9242 45 1 4.4128 1.3265 -4.8577 46 1 4.8829 2.6154 -3.7138 47 1 2.2094 1.8336 -4.5238 48 1 2.6795 3.1226 -3.3798 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094901738.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:09 Heat of formation + Delta-G solvation = -54.123545 kcal Electronic energy + Delta-G solvation = -24936.631013 eV Core-core repulsion = 21797.875835 eV Total energy + Delta-G solvation = -3138.755177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.06560 -38.40945 -37.34331 -36.36103 -34.90165 -31.93355 -31.21584 -29.87893 -28.99751 -27.79617 -26.06322 -25.21465 -24.35239 -22.03743 -21.34166 -20.92942 -19.40214 -18.59387 -17.68199 -17.22769 -16.74163 -16.60381 -15.91658 -15.79949 -15.32797 -14.78108 -14.55904 -14.38387 -14.21964 -14.00690 -13.61776 -13.57563 -13.34565 -13.09554 -13.00070 -12.85652 -12.78576 -12.66861 -12.51479 -12.31580 -12.21739 -12.13492 -11.92559 -11.69385 -11.58629 -11.49173 -11.39722 -11.17167 -11.00398 -10.98678 -10.67646 -10.27920 -9.37451 -8.24518 -6.39643 1.31633 1.34379 1.46226 1.96897 2.31036 2.48533 3.04006 3.53707 3.59247 3.69841 4.01273 4.07244 4.11716 4.18488 4.25488 4.41506 4.48643 4.54251 4.58779 4.66644 4.74354 4.77615 4.85051 4.86272 4.90357 4.90779 4.96330 4.99042 5.03874 5.05796 5.07912 5.13422 5.15142 5.18785 5.24762 5.31746 5.37404 5.41728 5.45505 5.53472 5.56967 5.62728 5.66406 5.90105 6.06221 6.69299 6.90626 7.27276 7.60254 8.82452 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017550 B = 0.006407 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.082818 B = 4369.248979 C = 5073.234455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.084 3.916 3 N -0.599 5.599 4 C 0.266 3.734 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.517 3.483 14 O -0.603 6.603 15 C -0.075 4.075 16 C -0.122 4.122 17 C -0.103 4.103 18 C -0.159 4.159 19 C -0.145 4.145 20 C -0.116 4.116 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.105 4.105 24 H 0.032 0.968 25 H 0.094 0.906 26 H 0.097 0.903 27 H 0.118 0.882 28 H 0.062 0.938 29 H 0.017 0.983 30 H -0.011 1.011 31 H 0.267 0.733 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.025 0.975 35 H 0.081 0.919 36 H 0.044 0.956 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.022 0.978 45 H 0.094 0.906 46 H 0.038 0.962 47 H 0.102 0.898 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.573 -11.836 -17.351 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.038 4.038 3 N -0.329 5.329 4 C 0.144 3.856 5 C -0.577 4.577 6 H 0.068 0.932 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.191 1.191 13 C 0.307 3.693 14 O -0.484 6.484 15 C -0.078 4.078 16 C -0.158 4.158 17 C -0.121 4.121 18 C -0.216 4.216 19 C -0.202 4.202 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.159 4.159 23 C -0.143 4.143 24 H 0.051 0.949 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.007 0.993 31 H 0.075 0.925 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.043 0.957 35 H 0.100 0.900 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.139 0.861 43 H 0.110 0.890 44 H 0.041 0.959 45 H 0.113 0.887 46 H 0.057 0.943 47 H 0.121 0.879 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.406 -11.150 -17.168 21.173 hybrid contribution 0.936 1.004 1.507 2.039 sum -4.470 -10.146 -15.661 19.188 Atomic orbital electron populations 1.22825 0.95079 1.04015 1.03202 1.22157 0.95485 0.82074 1.04035 1.48122 1.62844 1.14720 1.07229 1.18593 0.95652 0.90381 0.80985 1.21723 1.00465 1.29424 1.06108 0.93157 1.25876 1.01352 0.94451 0.97586 1.70070 1.36534 1.31878 1.18452 0.85381 0.78982 0.78032 0.78515 1.19158 1.20754 1.19141 1.21086 0.75691 0.86416 0.86108 1.90592 1.48686 1.21715 1.87456 1.21667 0.98633 0.96447 0.91084 1.22416 0.89828 0.98146 1.05452 1.21117 0.96561 0.96614 0.97834 1.22275 1.01682 0.99279 0.98361 1.21922 0.94030 1.01204 1.03072 1.22855 0.93285 0.96113 1.03038 1.22359 0.97886 0.98388 0.97945 1.22155 0.95968 0.97930 0.99867 1.22464 0.96022 0.98909 0.96858 0.94868 0.88807 0.88445 0.86465 0.91979 0.96527 0.99258 0.92451 0.87438 0.88045 0.95677 0.90042 0.93666 0.92860 0.91846 0.93306 0.90187 0.91343 0.86062 0.88957 0.95949 0.88734 0.94302 0.87925 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.19 9.14 71.98 0.66 -4.54 16 2 C 0.08 2.74 5.01 86.38 0.43 3.17 16 3 N -0.60 -26.59 2.46 -826.14 -2.03 -28.62 16 4 C 0.27 15.12 5.17 85.63 0.44 15.56 16 5 C -0.54 -32.49 9.39 25.60 0.24 -32.25 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.36 5.46 84.65 0.46 0.82 16 8 N -0.93 -58.27 13.29 21.45 0.28 -57.99 16 9 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.52 22.40 4.69 87.66 0.41 22.81 16 14 O -0.60 -33.03 15.03 -3.05 -0.05 -33.07 16 15 C -0.08 -2.17 0.27 -51.85 -0.01 -2.19 16 16 C -0.12 -2.64 3.21 30.60 0.10 -2.54 16 17 C -0.10 -2.60 1.83 -10.79 -0.02 -2.62 16 18 C -0.16 -3.78 7.74 71.98 0.56 -3.22 16 19 C -0.15 -2.79 8.96 71.98 0.64 -2.15 16 20 C -0.12 -2.79 4.94 31.89 0.16 -2.63 16 21 C -0.13 -3.49 6.61 31.67 0.21 -3.28 16 22 C -0.12 -3.14 6.80 31.32 0.21 -2.93 16 23 C -0.11 -2.88 3.77 31.32 0.12 -2.76 16 24 H 0.03 1.06 7.94 -2.39 -0.02 1.04 16 25 H 0.09 2.32 1.59 -2.39 0.00 2.32 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.12 2.97 3.14 -2.38 -0.01 2.97 16 28 H 0.06 2.16 8.13 -2.39 -0.02 2.14 16 29 H 0.02 0.97 7.87 -2.38 -0.02 0.95 16 30 H -0.01 -0.71 7.43 -2.39 -0.02 -0.73 16 31 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.11 1.56 7.94 -2.39 -0.02 1.54 16 33 H 0.10 2.06 2.99 -2.38 -0.01 2.05 16 34 H 0.02 0.89 6.66 -2.39 -0.02 0.87 16 35 H 0.08 1.41 7.60 -2.39 -0.02 1.39 16 36 H 0.04 1.06 8.12 -2.38 -0.02 1.04 16 37 H 0.05 1.54 4.56 -2.39 -0.01 1.53 16 38 H 0.06 1.17 6.17 -2.38 -0.01 1.16 16 39 H 0.05 0.97 8.14 -2.39 -0.02 0.96 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 1.82 5.67 -2.39 -0.01 1.81 16 42 H 0.12 1.85 8.06 -2.39 -0.02 1.84 16 43 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.10 2.04 6.35 -2.39 -0.02 2.03 16 48 H 0.05 1.82 5.16 -2.39 -0.01 1.81 16 Total: -1.00 -78.46 343.06 5.78 -72.68 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.94 Total: 17.16 kcal Atomic # 6 Polarization: -23.35 SS G_CDS: 4.61 Total: -18.74 kcal Atomic # 7 Polarization: -84.86 SS G_CDS: -1.75 Total: -86.61 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.05 Total: -33.07 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -78.46 5.78 -72.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901738.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.554 kcal (2) G-P(sol) polarization free energy of solvation -78.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds