Wall clock time and date at job start Tue Mar 31 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.47073 * 2 1 4 4 C 1.52999 * 109.47123 * 119.99920 * 2 1 3 5 5 C 1.52994 * 109.47242 * 75.68900 * 4 2 1 6 6 C 1.50708 * 110.43520 * 306.92530 * 5 4 2 7 7 O 1.21281 * 120.00163 * 105.85292 * 6 5 4 8 8 N 1.34780 * 119.99667 * 285.85758 * 6 5 4 9 9 C 1.46501 * 119.99920 * 4.53166 * 8 6 5 10 10 C 1.46497 * 119.99802 * 184.53233 * 8 6 5 11 11 H 1.08999 * 109.47188 * 0.02562 * 10 8 6 12 12 C 1.52999 * 109.47180 * 119.99700 * 10 8 6 13 13 C 1.50691 * 109.47357 * 239.99714 * 10 8 6 14 14 H 1.08001 * 120.00231 * 334.10019 * 13 10 8 15 15 C 1.37874 * 120.00481 * 154.09652 * 13 10 8 16 16 N 1.31515 * 119.99750 * 355.80138 * 15 13 10 17 17 Si 1.86803 * 120.00435 * 175.79735 * 15 13 10 18 18 H 1.48493 * 109.46843 * 90.00379 * 17 15 13 19 19 H 1.48506 * 109.46969 * 210.00292 * 17 15 13 20 20 H 1.48499 * 109.46953 * 330.00335 * 17 15 13 21 21 C 1.54887 * 110.60037 * 69.54206 * 5 4 2 22 22 C 1.54891 * 102.74968 * 156.67910 * 21 5 4 23 23 C 1.54266 * 104.19494 * 322.05770 * 22 21 5 24 24 C 1.53872 * 106.59821 * 23.61035 * 23 22 21 25 25 H 1.09003 * 109.47428 * 289.17638 * 1 2 3 26 26 H 1.09002 * 109.46912 * 49.17489 * 1 2 3 27 27 H 1.09001 * 109.46803 * 169.17545 * 1 2 3 28 28 H 1.08997 * 109.47015 * 239.99762 * 2 1 3 29 29 H 1.08997 * 109.46962 * 184.84861 * 3 2 1 30 30 H 1.09003 * 109.46977 * 304.84795 * 3 2 1 31 31 H 1.09002 * 109.46680 * 64.84324 * 3 2 1 32 32 H 1.09001 * 109.46992 * 315.69005 * 4 2 1 33 33 H 1.09004 * 109.47292 * 195.69263 * 4 2 1 34 34 H 1.09003 * 109.46809 * 266.29341 * 9 8 6 35 35 H 1.08986 * 109.47391 * 26.29465 * 9 8 6 36 36 H 1.09005 * 109.46823 * 146.29939 * 9 8 6 37 37 H 1.09005 * 109.47247 * 55.57739 * 12 10 8 38 38 H 1.08997 * 109.47378 * 175.57636 * 12 10 8 39 39 H 1.08997 * 109.47583 * 295.57931 * 12 10 8 40 40 H 0.97004 * 120.00275 * 5.59541 * 16 15 13 41 41 H 1.09003 * 110.75448 * 274.99247 * 21 5 4 42 42 H 1.08992 * 110.75731 * 38.36285 * 21 5 4 43 43 H 1.09000 * 110.48166 * 203.37964 * 22 21 5 44 44 H 1.08999 * 110.48872 * 80.73931 * 22 21 5 45 45 H 1.09007 * 110.02901 * 264.32936 * 23 22 21 46 46 H 1.08993 * 110.03200 * 142.89500 * 23 22 21 47 47 H 1.09006 * 110.03156 * 240.71725 * 24 23 22 48 48 H 1.08999 * 110.03380 * 119.28554 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.8739 -2.2315 1.0698 6 6 0.4528 -2.5635 0.6934 7 8 0.1865 -2.8857 -0.4451 8 7 -0.5221 -2.5021 1.6221 9 6 -0.2193 -2.0177 2.9711 10 6 -1.8846 -2.9198 1.2824 11 1 -1.9158 -3.2470 0.2431 12 6 -2.3058 -4.0749 2.1930 13 6 -2.8278 -1.7602 1.4730 14 1 -2.5838 -0.9751 2.1734 15 6 -4.0023 -1.7013 0.7534 16 7 -4.2610 -2.6128 -0.1587 17 14 -5.2263 -0.3270 1.0739 18 1 -4.9180 0.8263 0.1908 19 1 -6.6011 -0.8128 0.7920 20 1 -5.1329 0.0978 2.4938 21 6 2.8570 -2.7644 -0.0019 22 6 2.9926 -4.2612 0.3728 23 6 2.9904 -4.2667 1.9154 24 6 2.2790 -2.9763 2.3586 25 1 -0.3634 0.3376 0.9706 26 1 -0.3633 0.6719 -0.7777 27 1 -0.3633 -1.0094 -0.1930 28 1 1.8933 -0.5139 -0.8899 29 1 3.1265 1.4438 -0.0869 30 1 1.6075 1.9809 -0.8434 31 1 1.7492 1.9307 0.9302 32 1 1.4678 -0.3933 2.1171 33 1 3.0939 -0.4869 1.3993 34 1 0.0126 -2.8643 3.6175 35 1 0.6375 -1.3453 2.9319 36 1 -1.0827 -1.4836 3.3677 37 1 -2.1994 -3.7735 3.2351 38 1 -3.3458 -4.3337 1.9941 39 1 -1.6725 -4.9405 1.9987 40 1 -3.6660 -3.3708 -0.2693 41 1 2.4365 -2.6529 -1.0013 42 1 3.8198 -2.2590 0.0718 43 1 3.9298 -4.6664 -0.0088 44 1 2.1456 -4.8290 -0.0120 45 1 4.0139 -4.2764 2.2902 46 1 2.4487 -5.1374 2.2848 47 1 2.9573 -2.3597 2.9485 48 1 1.3921 -3.2207 2.9431 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901806.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:17 Heat of formation + Delta-G solvation = -45.710399 kcal Electronic energy + Delta-G solvation = -25137.291181 eV Core-core repulsion = 21998.900826 eV Total energy + Delta-G solvation = -3138.390356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.68798 -37.04601 -35.44400 -35.38592 -33.00615 -30.46036 -29.19266 -28.33350 -26.72109 -26.21552 -24.93034 -24.70152 -22.52283 -20.63152 -20.10498 -19.59109 -18.09473 -16.75562 -16.03396 -15.60680 -15.47496 -14.82526 -14.46615 -13.95777 -13.72231 -13.67332 -13.25705 -13.02092 -12.94794 -12.59627 -12.26506 -12.03111 -11.78636 -11.58830 -11.51037 -11.28126 -11.20991 -11.12631 -11.10381 -10.85777 -10.73468 -10.71941 -10.49777 -10.34430 -10.24400 -10.15318 -10.05000 -9.92915 -9.77938 -8.85738 -8.68941 -8.35846 -7.47858 -6.36699 -4.10741 3.41071 3.43049 3.46788 3.59283 3.95239 4.51059 4.59270 4.78067 4.82112 5.14003 5.19836 5.26321 5.35024 5.41103 5.51083 5.59007 5.62959 5.70080 5.77891 5.80222 5.88683 5.92076 6.00327 6.04369 6.06194 6.11523 6.15006 6.20292 6.31220 6.32686 6.36595 6.41974 6.44644 6.46850 6.53339 6.59317 6.62097 6.73893 6.82013 7.08633 7.21683 7.29815 7.66678 8.00843 8.35621 8.53879 8.81388 9.11668 9.61543 11.00320 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.006921 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.410973 B = 4044.531322 C = 4823.706406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.099 4.099 3 C -0.143 4.143 4 C -0.101 4.101 5 C -0.083 4.083 6 C 0.534 3.466 7 O -0.553 6.553 8 N -0.588 5.588 9 C 0.072 3.928 10 C 0.240 3.760 11 H 0.065 0.935 12 C -0.144 4.144 13 C -0.599 4.599 14 H 0.053 0.947 15 C 0.026 3.974 16 N -0.905 5.905 17 Si 1.068 2.932 18 H -0.288 1.288 19 H -0.284 1.284 20 H -0.289 1.289 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.122 4.122 24 C -0.135 4.135 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.095 0.905 28 H 0.070 0.930 29 H 0.047 0.953 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.272 0.728 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.608 2.039 5.901 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.117 4.117 3 C -0.200 4.200 4 C -0.138 4.138 5 C -0.086 4.086 6 C 0.322 3.678 7 O -0.433 6.433 8 N -0.319 5.319 9 C -0.072 4.072 10 C 0.140 3.860 11 H 0.083 0.917 12 C -0.203 4.203 13 C -0.637 4.637 14 H 0.071 0.929 15 C -0.180 4.180 16 N -0.541 5.541 17 Si 0.897 3.103 18 H -0.215 1.215 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.139 4.139 22 C -0.162 4.162 23 C -0.160 4.160 24 C -0.172 4.172 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.988 2.499 4.806 14.073 hybrid contribution 1.414 -0.542 0.755 1.692 sum 14.402 1.957 5.561 15.562 Atomic orbital electron populations 1.22332 0.93358 1.05470 1.01257 1.21168 0.97350 0.95261 0.97917 1.21844 0.99963 0.96651 1.01560 1.21864 1.01039 0.92105 0.98779 1.21638 0.93990 0.96212 0.96798 1.19892 0.86076 0.76584 0.85212 1.90634 1.83185 1.49744 1.19765 1.48140 1.10486 1.62696 1.10529 1.22032 1.01877 0.98236 0.85027 1.19025 0.77299 0.93253 0.96458 0.91722 1.22176 1.00461 0.97688 0.99997 1.22022 1.05642 1.08346 1.27734 0.92885 1.25728 0.98081 1.01637 0.92517 1.70730 1.40844 1.12229 1.30272 0.83562 0.76115 0.75082 0.75583 1.21478 1.21015 1.21483 1.22407 0.97335 0.94937 0.99181 1.22348 1.01480 0.97128 0.95288 1.22116 0.99928 0.97757 0.96200 1.22727 1.01482 0.96246 0.96778 0.93006 0.93809 0.88639 0.91181 0.93369 0.92905 0.92996 0.90884 0.91553 0.93824 0.91322 0.90816 0.94176 0.92489 0.96201 0.91608 0.90077 0.91499 0.92028 0.91355 0.92149 0.92185 0.91335 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 8.29 37.16 0.31 -2.95 16 2 C -0.10 -1.53 2.69 -90.62 -0.24 -1.77 16 3 C -0.14 -1.83 9.12 37.16 0.34 -1.49 16 4 C -0.10 -1.39 3.67 -26.73 -0.10 -1.49 16 5 C -0.08 -1.27 0.28 -154.00 -0.04 -1.31 16 6 C 0.53 10.73 3.26 -10.98 -0.04 10.70 16 7 O -0.55 -13.40 13.70 5.56 0.08 -13.32 16 8 N -0.59 -12.08 2.22 -175.27 -0.39 -12.47 16 9 C 0.07 1.19 7.67 59.85 0.46 1.65 16 10 C 0.24 5.91 2.32 -69.09 -0.16 5.75 16 11 H 0.06 1.86 5.41 -51.93 -0.28 1.58 16 12 C -0.14 -3.23 9.24 37.16 0.34 -2.89 16 13 C -0.60 -15.86 8.17 -34.45 -0.28 -16.14 16 14 H 0.05 1.39 6.59 -52.49 -0.35 1.04 16 15 C 0.03 0.73 5.46 -17.82 -0.10 0.63 16 16 N -0.91 -27.05 13.62 55.43 0.75 -26.30 16 17 Si 1.07 24.86 29.91 -169.99 -5.08 19.78 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 21 C -0.10 -1.45 4.88 -24.74 -0.12 -1.58 16 22 C -0.12 -1.71 6.61 -25.07 -0.17 -1.87 16 23 C -0.12 -1.51 6.80 -25.61 -0.17 -1.68 16 24 C -0.14 -1.75 4.86 -25.61 -0.12 -1.88 16 25 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 26 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 27 H 0.10 2.23 3.74 -51.93 -0.19 2.03 16 28 H 0.07 1.15 6.98 -51.93 -0.36 0.79 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.00 5.23 -51.93 -0.27 0.73 16 33 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 34 H 0.04 0.65 6.60 -51.93 -0.34 0.31 16 35 H 0.07 0.98 3.51 -51.94 -0.18 0.80 16 36 H 0.07 1.31 6.58 -51.93 -0.34 0.97 16 37 H 0.04 0.82 7.53 -51.93 -0.39 0.43 16 38 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.27 8.24 6.65 -40.82 -0.27 7.97 16 41 H 0.08 1.35 6.83 -51.93 -0.35 1.00 16 42 H 0.07 0.81 7.98 -51.93 -0.41 0.40 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.74 7.84 -51.93 -0.41 0.34 16 48 H 0.09 1.20 4.10 -51.93 -0.21 0.98 16 LS Contribution 346.85 15.07 5.23 5.23 Total: -1.00 -30.33 346.85 -7.73 -38.05 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.22 Total: 5.35 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.09 Total: -16.31 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.37 Total: -38.77 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.08 Total: 19.78 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.33 -7.73 -38.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901806.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.659 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds