Wall clock time and date at job start Tue Mar 31 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47075 * 2 1 4 4 C 1.52994 * 109.47171 * 120.00037 * 2 1 3 5 5 C 1.52997 * 109.47381 * 68.22711 * 4 2 1 6 6 C 1.50699 * 110.43416 * 292.28845 * 5 4 2 7 7 O 1.21282 * 120.00059 * 124.80386 * 6 5 4 8 8 N 1.34779 * 119.99885 * 304.52300 * 6 5 4 9 9 C 1.46500 * 119.99821 * 355.44033 * 8 6 5 10 10 C 1.46503 * 119.99836 * 175.44107 * 8 6 5 11 11 H 1.09002 * 109.46993 * 359.97438 * 10 8 6 12 12 C 1.53000 * 109.46555 * 239.99941 * 10 8 6 13 13 C 1.50696 * 109.46945 * 119.99845 * 10 8 6 14 14 H 1.08007 * 120.00192 * 34.20371 * 13 10 8 15 15 C 1.37881 * 120.00129 * 214.19372 * 13 10 8 16 16 N 1.31508 * 120.00219 * 183.48126 * 15 13 10 17 17 Si 1.86804 * 119.99592 * 3.48894 * 15 13 10 18 18 H 1.48493 * 109.47112 * 93.19158 * 17 15 13 19 19 H 1.48498 * 109.46754 * 213.19175 * 17 15 13 20 20 H 1.48498 * 109.47024 * 333.18647 * 17 15 13 21 21 C 1.54896 * 110.59759 * 54.90384 * 5 4 2 22 22 C 1.54887 * 102.74745 * 156.67508 * 21 5 4 23 23 C 1.54260 * 104.19787 * 322.05722 * 22 21 5 24 24 C 1.53876 * 106.60049 * 23.61420 * 23 22 21 25 25 H 1.09004 * 109.47158 * 283.75535 * 1 2 3 26 26 H 1.09005 * 109.47376 * 43.74699 * 1 2 3 27 27 H 1.08999 * 109.47664 * 163.74872 * 1 2 3 28 28 H 1.09000 * 109.46679 * 239.99991 * 2 1 3 29 29 H 1.08998 * 109.46967 * 184.86994 * 3 2 1 30 30 H 1.09005 * 109.47155 * 304.86194 * 3 2 1 31 31 H 1.08997 * 109.47228 * 64.86635 * 3 2 1 32 32 H 1.09007 * 109.47035 * 308.22560 * 4 2 1 33 33 H 1.09000 * 109.47032 * 188.23190 * 4 2 1 34 34 H 1.08989 * 109.47193 * 95.42648 * 9 8 6 35 35 H 1.09008 * 109.46895 * 215.42618 * 9 8 6 36 36 H 1.09005 * 109.47057 * 335.41589 * 9 8 6 37 37 H 1.09002 * 109.47325 * 295.73457 * 12 10 8 38 38 H 1.08995 * 109.47094 * 55.74425 * 12 10 8 39 39 H 1.09005 * 109.47001 * 175.74098 * 12 10 8 40 40 H 0.97002 * 120.00095 * 179.97438 * 16 15 13 41 41 H 1.09001 * 110.75244 * 274.99595 * 21 5 4 42 42 H 1.08996 * 110.75216 * 38.36163 * 21 5 4 43 43 H 1.09000 * 110.48669 * 203.37686 * 22 21 5 44 44 H 1.09003 * 110.48181 * 80.73610 * 22 21 5 45 45 H 1.08999 * 110.03303 * 264.32430 * 23 22 21 46 46 H 1.09005 * 110.02841 * 142.89166 * 23 22 21 47 47 H 1.09002 * 110.02930 * 240.71477 * 24 23 22 48 48 H 1.08997 * 110.03369 * 119.28387 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.7056 -2.2109 1.1503 6 6 0.2158 -2.4223 1.2329 7 8 -0.3602 -3.0292 0.3548 8 7 -0.4757 -1.9419 2.2853 9 6 0.2326 -1.3024 3.3968 10 6 -1.9357 -2.0593 2.3177 11 1 -2.2802 -2.5586 1.4120 12 6 -2.5578 -0.6638 2.3984 13 6 -2.3483 -2.8638 3.5233 14 1 -1.7825 -2.7911 4.4405 15 6 -3.4481 -3.6926 3.4557 16 7 -3.8490 -4.3421 4.5266 17 14 -4.3687 -3.8930 1.8426 18 1 -3.8330 -5.0681 1.1097 19 1 -5.8131 -4.0985 2.1193 20 1 -4.1918 -2.6716 1.0167 21 6 2.2660 -2.8092 -0.1640 22 6 2.3890 -4.3162 0.1717 23 6 2.8601 -4.3395 1.6404 24 6 2.4255 -3.0009 2.2627 25 1 -0.3634 0.2444 0.9982 26 1 -0.3634 0.7424 -0.7106 27 1 -0.3634 -0.9866 -0.2876 28 1 1.8932 -0.5138 -0.8900 29 1 3.1265 1.4438 -0.0872 30 1 1.6073 1.9809 -0.8433 31 1 1.7496 1.9306 0.9303 32 1 1.5616 -0.2993 2.1331 33 1 3.1200 -0.5956 1.3258 34 1 0.2404 -0.2225 3.2494 35 1 -0.2731 -1.5376 4.3334 36 1 1.2576 -1.6714 3.4348 37 1 -2.2740 -0.1934 3.3398 38 1 -2.1992 -0.0576 1.5666 39 1 -3.6434 -0.7464 2.3463 40 1 -4.6230 -4.9248 4.4791 41 1 1.5694 -2.6523 -0.9876 42 1 3.2424 -2.3842 -0.3962 43 1 3.1278 -4.7916 -0.4735 44 1 1.4218 -4.8091 0.0734 45 1 3.9449 -4.4364 1.6831 46 1 2.3895 -5.1677 2.1703 47 1 3.2995 -2.4482 2.6074 48 1 1.7442 -3.1796 3.0946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094901807.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:19 Heat of formation + Delta-G solvation = -49.277424 kcal Electronic energy + Delta-G solvation = -25099.907275 eV Core-core repulsion = 21961.362242 eV Total energy + Delta-G solvation = -3138.545034 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.66479 -37.06887 -35.69735 -35.16289 -32.70909 -30.96950 -29.36207 -28.45292 -27.01109 -26.29494 -25.23660 -24.84978 -22.56908 -20.61503 -19.88244 -19.51845 -18.00621 -16.92242 -16.02224 -15.74114 -15.40655 -14.85275 -14.58879 -14.23608 -13.82572 -13.64050 -13.13188 -12.98621 -12.85142 -12.55555 -12.40897 -12.24478 -12.04794 -11.95539 -11.67822 -11.47993 -11.27025 -11.19053 -11.06064 -10.89232 -10.79402 -10.64580 -10.59317 -10.57864 -10.34640 -10.14536 -10.03133 -10.01301 -9.71221 -9.21105 -8.73875 -8.58309 -7.56008 -6.14495 -4.15892 3.31469 3.39724 3.42545 3.46510 3.92303 4.40407 4.58265 4.79352 4.81823 5.07341 5.10733 5.17135 5.25231 5.35098 5.54873 5.61461 5.65914 5.68047 5.72525 5.79617 5.81576 5.91403 5.94375 6.00529 6.02994 6.06506 6.08794 6.11958 6.18993 6.22409 6.27658 6.34800 6.38614 6.42149 6.46034 6.49014 6.56868 6.61586 6.67286 6.74268 6.98178 7.13886 7.54899 7.70372 8.22320 8.56690 8.87278 9.07604 9.48938 10.97560 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017469 B = 0.007079 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.486232 B = 3954.243546 C = 4552.053771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.096 4.096 3 C -0.144 4.144 4 C -0.114 4.114 5 C -0.083 4.083 6 C 0.531 3.469 7 O -0.557 6.557 8 N -0.586 5.586 9 C 0.068 3.932 10 C 0.224 3.776 11 H 0.065 0.935 12 C -0.150 4.150 13 C -0.523 4.523 14 H 0.077 0.923 15 C 0.079 3.921 16 N -0.894 5.894 17 Si 0.874 3.126 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.261 1.261 21 C -0.097 4.097 22 C -0.125 4.125 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.030 0.970 39 H 0.052 0.948 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.070 0.930 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.160 7.998 -6.287 17.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.151 4.151 5 C -0.086 4.086 6 C 0.319 3.681 7 O -0.437 6.437 8 N -0.316 5.316 9 C -0.075 4.075 10 C 0.123 3.877 11 H 0.082 0.918 12 C -0.208 4.208 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.124 4.124 16 N -0.531 5.531 17 Si 0.701 3.299 18 H -0.199 1.199 19 H -0.214 1.214 20 H -0.186 1.186 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.684 7.558 -6.636 16.982 hybrid contribution -0.588 -0.160 -0.539 0.813 sum 13.096 7.398 -7.174 16.664 Atomic orbital electron populations 1.22306 0.94851 1.03148 1.02321 1.21142 0.96428 0.95556 0.98312 1.21842 1.00312 0.96380 1.01584 1.22050 1.00945 0.92762 0.99343 1.21643 0.93430 0.96100 0.97432 1.19991 0.88193 0.78169 0.81735 1.90604 1.70944 1.42017 1.40135 1.48147 1.08547 1.56812 1.18106 1.22033 0.97430 0.96195 0.91873 1.19286 0.75742 0.93567 0.99111 0.91763 1.22285 1.00611 0.98513 0.99419 1.21137 1.12740 1.24610 0.97585 0.90488 1.24945 0.96778 0.94526 0.96198 1.69892 1.25836 1.28979 1.28379 0.86895 0.78726 0.79764 0.84540 1.19947 1.21413 1.18571 1.22355 0.99828 0.94942 0.96304 1.22359 1.01660 0.96764 0.95453 1.22120 1.00092 0.97459 0.96392 1.22403 0.99819 0.95787 0.97649 0.91756 0.93532 0.90796 0.91197 0.93124 0.92996 0.92821 0.89977 0.91546 0.93798 0.90528 0.91032 0.93330 0.95147 0.92892 0.92508 0.90562 0.91614 0.92262 0.90663 0.92177 0.91833 0.91159 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 7.65 37.16 0.28 -2.30 16 2 C -0.10 -1.21 2.75 -90.62 -0.25 -1.45 16 3 C -0.14 -1.49 9.15 37.16 0.34 -1.15 16 4 C -0.11 -1.41 3.57 -26.74 -0.10 -1.50 16 5 C -0.08 -1.22 0.27 -154.00 -0.04 -1.27 16 6 C 0.53 10.39 3.42 -10.98 -0.04 10.35 16 7 O -0.56 -13.01 13.16 5.56 0.07 -12.94 16 8 N -0.59 -11.77 1.94 -175.26 -0.34 -12.11 16 9 C 0.07 1.11 7.50 59.85 0.45 1.56 16 10 C 0.22 5.31 2.22 -69.08 -0.15 5.15 16 11 H 0.06 1.69 3.99 -51.93 -0.21 1.49 16 12 C -0.15 -3.13 9.05 37.16 0.34 -2.79 16 13 C -0.52 -14.29 8.76 -34.44 -0.30 -14.59 16 14 H 0.08 2.23 6.76 -52.48 -0.36 1.87 16 15 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 16 N -0.89 -26.95 13.96 55.43 0.77 -26.17 16 17 Si 0.87 22.36 27.05 -169.99 -4.60 17.76 16 18 H -0.27 -7.19 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.26 -6.47 6.51 56.52 0.37 -6.10 16 21 C -0.10 -1.35 4.14 -24.74 -0.10 -1.46 16 22 C -0.12 -1.78 6.51 -25.08 -0.16 -1.95 16 23 C -0.12 -1.64 6.80 -25.62 -0.17 -1.81 16 24 C -0.12 -1.61 4.61 -25.61 -0.12 -1.73 16 25 H 0.06 1.02 5.53 -51.93 -0.29 0.74 16 26 H 0.05 0.65 7.98 -51.93 -0.41 0.23 16 27 H 0.07 1.36 5.18 -51.93 -0.27 1.10 16 28 H 0.07 0.88 6.61 -51.93 -0.34 0.54 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.03 4.20 -51.93 -0.22 0.81 16 33 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 34 H 0.04 0.63 6.92 -51.94 -0.36 0.27 16 35 H 0.08 1.38 6.54 -51.92 -0.34 1.04 16 36 H 0.07 1.00 3.68 -51.93 -0.19 0.81 16 37 H 0.05 0.95 7.81 -51.93 -0.41 0.55 16 38 H 0.03 0.57 6.30 -51.93 -0.33 0.24 16 39 H 0.05 1.13 7.99 -51.93 -0.41 0.72 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.08 1.20 7.14 -51.93 -0.37 0.83 16 42 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.30 7.52 -51.93 -0.39 0.91 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.07 0.77 7.71 -51.93 -0.40 0.37 16 48 H 0.08 1.21 5.97 -51.93 -0.31 0.90 16 LS Contribution 339.62 15.07 5.12 5.12 Total: -1.00 -31.04 339.62 -7.23 -38.28 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.13 Total: 2.83 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: -0.13 Total: -12.76 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.43 Total: -38.28 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.07 Total: -12.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.60 Total: 17.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.04 -7.23 -38.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094901807.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.001 kcal (2) G-P(sol) polarization free energy of solvation -31.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds