Wall clock time and date at job start Tue Mar 31 2020 06:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47555 * 2 1 4 4 C 1.46501 * 120.00006 * 270.00011 * 3 2 1 5 5 C 1.50702 * 109.46830 * 269.99742 * 4 3 2 6 6 H 1.07992 * 120.00127 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99457 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00366 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99933 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46999 * 59.99930 * 9 7 5 11 11 H 1.48501 * 109.47505 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47104 * 300.00092 * 9 7 5 13 13 C 1.34782 * 119.99724 * 89.99571 * 3 2 1 14 14 O 1.21280 * 119.99222 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00377 * 0.02562 * 13 3 2 16 16 C 1.52989 * 109.47165 * 180.02562 * 15 13 3 17 17 C 1.52997 * 109.47290 * 179.97438 * 16 15 13 18 18 C 1.53002 * 109.47469 * 179.97438 * 17 16 15 19 19 C 1.52997 * 109.46817 * 64.99892 * 18 17 16 20 20 C 1.52999 * 109.47317 * 179.97438 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.53000 * 109.47233 * 184.99697 * 18 17 16 24 24 H 1.09008 * 109.46651 * 59.99994 * 1 2 3 25 25 H 1.08994 * 109.47352 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47519 * 300.00492 * 1 2 3 27 27 H 1.08999 * 109.47519 * 239.99507 * 2 1 3 28 28 H 1.09000 * 109.47138 * 119.99633 * 2 1 3 29 29 H 1.08998 * 109.46634 * 29.99603 * 4 3 2 30 30 H 1.08995 * 109.47246 * 149.99719 * 4 3 2 31 31 H 0.97000 * 119.99585 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46957 * 59.99820 * 15 13 3 33 33 H 1.09006 * 109.46969 * 300.00343 * 15 13 3 34 34 H 1.08997 * 109.47705 * 59.99491 * 16 15 13 35 35 H 1.09006 * 109.47323 * 299.99962 * 16 15 13 36 36 H 1.09008 * 109.47149 * 59.99652 * 17 16 15 37 37 H 1.08997 * 109.47163 * 299.99722 * 17 16 15 38 38 H 1.09002 * 109.47070 * 305.00072 * 18 17 16 39 39 H 1.08996 * 109.47853 * 300.00202 * 19 18 17 40 40 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 41 41 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 42 42 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 43 43 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 44 44 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 45 45 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 46 46 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 47 47 H 1.08992 * 109.47399 * 300.00166 * 23 18 17 48 48 H 1.09004 * 109.46724 * 60.00652 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8349 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3895 -2.8778 8 7 3.3492 3.1256 -3.6180 9 14 5.9136 2.0965 -3.4167 10 1 6.1418 0.6398 -3.5934 11 1 6.1612 2.7964 -4.7029 12 1 6.8408 2.6208 -2.3820 13 6 2.2430 2.0166 1.1673 14 8 2.6469 3.1601 1.1672 15 6 1.9922 1.3060 2.4724 16 6 2.3229 2.2436 3.6352 17 6 2.0677 1.5225 4.9602 18 6 2.3990 2.4599 6.1232 19 6 1.4314 3.6450 6.1144 20 6 1.7621 4.5822 7.2777 21 6 1.6265 3.8226 8.5990 22 6 2.5941 2.6375 8.6077 23 6 2.2636 1.7008 7.4446 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.5818 1.6877 -2.0283 30 1 2.0957 3.1410 -1.1384 31 1 3.6754 3.5160 -4.4439 32 1 2.6227 0.4188 2.5299 33 1 0.9443 1.0115 2.5302 34 1 1.6922 3.1307 3.5774 35 1 3.3707 2.5386 3.5775 36 1 2.6982 0.6352 5.0183 37 1 1.0199 1.2280 5.0177 38 1 3.4207 2.8243 6.0164 39 1 1.5277 4.1859 5.1730 40 1 0.4096 3.2806 6.2212 41 1 1.0725 5.4263 7.2717 42 1 2.7839 4.9466 7.1714 43 1 0.6047 3.4582 8.7053 44 1 1.8626 4.4902 9.4276 45 1 2.4978 2.0968 9.5491 46 1 3.6159 3.0020 8.5013 47 1 1.2420 1.3364 7.5514 48 1 2.9531 0.8565 7.4509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103208194.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:42 Heat of formation + Delta-G solvation = -89.183815 kcal Electronic energy + Delta-G solvation = -22452.558269 eV Core-core repulsion = 19312.282765 eV Total energy + Delta-G solvation = -3140.275505 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -39.26945 -38.72155 -35.33422 -34.55025 -32.77474 -31.11456 -30.81266 -30.01114 -27.60436 -26.02890 -23.39715 -22.95034 -22.66637 -21.64097 -20.46288 -19.84716 -18.13523 -16.47906 -16.14034 -15.67941 -15.57020 -15.14790 -14.49592 -14.38807 -14.22523 -14.08880 -13.53410 -13.31749 -13.17594 -12.83538 -12.48282 -12.38712 -12.17421 -12.00006 -11.67032 -11.59300 -11.40935 -11.25014 -11.19200 -11.05102 -10.98061 -10.88757 -10.70446 -10.54295 -10.47135 -10.40288 -10.09663 -10.09154 -9.94640 -9.60892 -8.77378 -8.40088 -7.59062 -6.00966 -4.05596 3.33554 3.37899 3.40520 3.54737 4.01377 4.46633 4.52495 4.57149 4.62832 4.95175 5.01740 5.14667 5.18136 5.27676 5.33137 5.36313 5.37467 5.38265 5.39884 5.50692 5.54248 5.63225 5.70939 5.73553 5.83869 5.85463 5.88857 5.89551 5.94501 5.99587 6.04020 6.09855 6.15198 6.17972 6.25063 6.27648 6.36253 6.49358 6.53219 6.60695 7.13542 7.49861 7.62110 7.96090 8.28224 8.51805 8.94684 9.19429 9.59527 11.07052 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022318 B = 0.003167 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.308378 B = 8838.738092 C = 9393.630441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.544 6.544 15 C -0.140 4.140 16 C -0.104 4.104 17 C -0.114 4.114 18 C -0.087 4.087 19 C -0.118 4.118 20 C -0.121 4.121 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.114 4.114 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -5.313 21.055 22.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.290 3.710 14 O -0.422 6.422 15 C -0.180 4.180 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.105 4.105 19 C -0.155 4.155 20 C -0.158 4.158 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.151 4.151 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.759 -4.595 20.847 22.111 hybrid contribution 0.942 -0.273 -0.497 1.099 sum -4.817 -4.868 20.350 21.472 Atomic orbital electron populations 1.22218 0.96942 1.01284 1.02266 1.21384 0.93399 0.84357 1.02542 1.48281 1.63863 1.13202 1.07881 1.19232 0.96116 0.93626 0.78356 1.21413 0.97000 1.31835 1.06161 0.92592 1.24937 0.97819 0.94969 0.96418 1.69928 1.35712 1.33488 1.14372 0.86567 0.84880 0.78212 0.77802 1.20278 1.21189 1.20193 1.20437 0.78313 0.86990 0.85305 1.90653 1.45907 1.18286 1.87372 1.21732 1.02722 0.99868 0.93679 1.21372 1.02893 0.98155 0.91758 1.21658 1.01299 0.98159 0.94020 1.21161 0.99887 0.95465 0.94015 1.21650 0.99034 0.96263 0.98545 1.21546 1.01664 0.97957 0.94670 1.21536 0.99572 0.97110 0.97438 1.21525 0.99508 0.96586 0.98124 1.21578 1.01481 0.97791 0.94284 0.92149 0.92283 0.93056 0.90174 0.91723 0.95191 0.94008 0.92711 0.89833 0.89914 0.91186 0.91376 0.92132 0.92181 0.91167 0.91248 0.92206 0.92240 0.92050 0.92209 0.92454 0.92392 0.92100 0.92157 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.15 0.38 -1.92 16 2 C 0.11 1.75 5.93 -4.04 -0.02 1.73 16 3 N -0.60 -12.94 2.46 -175.06 -0.43 -13.37 16 4 C 0.25 6.57 5.16 -5.19 -0.03 6.55 16 5 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.05 13.29 55.43 0.74 -26.32 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.50 10.62 7.67 -10.98 -0.08 10.54 16 14 O -0.54 -13.98 15.56 5.56 0.09 -13.90 16 15 C -0.14 -2.08 4.25 -27.89 -0.12 -2.20 16 16 C -0.10 -1.45 4.26 -26.74 -0.11 -1.56 16 17 C -0.11 -1.20 4.68 -26.73 -0.13 -1.32 16 18 C -0.09 -0.86 2.19 -90.62 -0.20 -1.06 16 19 C -0.12 -1.18 4.96 -26.73 -0.13 -1.31 16 20 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.12 -0.95 5.92 -26.76 -0.16 -1.11 16 23 C -0.11 -0.97 5.20 -26.76 -0.14 -1.11 16 24 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.66 7.22 -51.93 -0.38 0.29 16 27 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 28 H 0.06 0.88 6.44 -51.93 -0.33 0.54 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 33 H 0.08 1.05 7.19 -51.93 -0.37 0.68 16 34 H 0.07 1.05 6.52 -51.93 -0.34 0.71 16 35 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 36 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.79 6.57 -51.93 -0.34 0.45 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 372.43 15.07 5.61 5.61 Total: -1.00 -32.61 372.43 -9.75 -42.36 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -9.25 Total: -2.57 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.48 Total: -8.98 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.31 Total: -39.68 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.90 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.61 -9.75 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103208194.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.826 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds