Wall clock time and date at job start Tue Mar 31 2020 06:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47268 * 2 1 4 4 C 1.46500 * 120.00123 * 270.00262 * 3 2 1 5 5 C 1.50700 * 109.47101 * 269.99899 * 4 3 2 6 6 H 1.08002 * 120.00255 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00213 * 180.02562 * 5 4 3 8 8 N 1.31510 * 120.00595 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99649 * 359.97438 * 7 5 4 10 10 H 1.48492 * 109.47305 * 90.00427 * 9 7 5 11 11 H 1.48503 * 109.46768 * 210.00031 * 9 7 5 12 12 H 1.48504 * 109.47133 * 329.99882 * 9 7 5 13 13 C 1.34779 * 119.99712 * 90.00422 * 3 2 1 14 14 O 1.21282 * 119.99927 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00033 * 359.97438 * 13 3 2 16 16 C 1.53006 * 109.46866 * 180.02562 * 15 13 3 17 17 H 1.08992 * 109.47046 * 304.99824 * 16 15 13 18 18 C 1.52997 * 109.47021 * 65.00201 * 16 15 13 19 19 C 1.52999 * 109.46811 * 184.99981 * 16 15 13 20 20 C 1.52996 * 109.47179 * 180.02562 * 19 16 15 21 21 C 1.53003 * 109.47531 * 179.97438 * 20 19 16 22 22 C 1.53000 * 109.46789 * 59.99842 * 21 20 19 23 23 C 1.52996 * 109.47375 * 299.99994 * 22 21 20 24 24 C 1.53003 * 109.47157 * 60.00231 * 23 22 21 25 25 H 1.09002 * 109.46533 * 299.99998 * 1 2 3 26 26 H 1.08994 * 109.47108 * 59.99369 * 1 2 3 27 27 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47335 * 240.00454 * 2 1 3 29 29 H 1.09003 * 109.47589 * 120.00282 * 2 1 3 30 30 H 1.08993 * 109.47349 * 29.99900 * 4 3 2 31 31 H 1.09005 * 109.47039 * 150.00075 * 4 3 2 32 32 H 0.97002 * 120.00302 * 179.97438 * 8 7 5 33 33 H 1.08993 * 109.47512 * 60.00410 * 15 13 3 34 34 H 1.09000 * 109.47247 * 300.00119 * 15 13 3 35 35 H 1.08992 * 109.47518 * 59.99913 * 18 16 15 36 36 H 1.09002 * 109.46905 * 179.97438 * 18 16 15 37 37 H 1.09004 * 109.47446 * 299.99458 * 18 16 15 38 38 H 1.09009 * 109.47170 * 300.00068 * 19 16 15 39 39 H 1.09001 * 109.47244 * 300.00397 * 20 19 16 40 40 H 1.09001 * 109.47165 * 59.99753 * 20 19 16 41 41 H 1.08996 * 109.46762 * 300.00292 * 21 20 19 42 42 H 1.09002 * 109.47262 * 179.97438 * 21 20 19 43 43 H 1.08995 * 109.47209 * 180.02562 * 22 21 20 44 44 H 1.08992 * 109.47346 * 60.00198 * 22 21 20 45 45 H 1.09003 * 109.47406 * 300.00706 * 23 22 21 46 46 H 1.08997 * 109.47395 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47786 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47183 * 59.99532 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3905 -2.8774 8 7 5.3916 2.1843 -3.2569 9 14 3.0130 3.4361 -3.9286 10 1 3.1157 4.8561 -3.5068 11 1 3.4067 3.3138 -5.3553 12 1 1.6134 2.9693 -3.7595 13 6 2.2431 2.0165 1.1673 14 8 2.6469 3.1601 1.1673 15 6 1.9914 1.3062 2.4723 16 6 2.3225 2.2437 3.6353 17 1 3.3442 2.6080 3.5287 18 6 1.3548 3.4288 3.6263 19 6 2.1869 1.4846 4.9567 20 6 2.5173 2.4222 6.1197 21 6 2.3811 1.6633 7.4413 22 6 3.3487 0.4782 7.4508 23 6 3.0183 -0.4594 6.2879 24 6 3.1545 0.2994 4.9663 25 1 -0.3632 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5817 1.6878 -2.0283 31 1 2.0956 3.1411 -1.1383 32 1 5.7176 2.5748 -4.0828 33 1 2.6212 0.4185 2.5302 34 1 0.9433 1.0124 2.5299 35 1 0.3331 3.0645 3.7328 36 1 1.5904 4.0965 4.4551 37 1 1.4514 3.9697 2.6848 38 1 1.1650 1.1202 5.0633 39 1 3.5389 2.7870 6.0134 40 1 1.8276 3.2663 6.1131 41 1 1.3593 1.2989 7.5473 42 1 2.6169 2.3312 8.2698 43 1 3.2514 -0.0627 8.3921 44 1 4.3705 0.8426 7.3447 45 1 1.9965 -0.8238 6.3939 46 1 3.7080 -1.3035 6.2944 47 1 2.9187 -0.3684 4.1378 48 1 4.1763 0.6639 4.8603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209813.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:14 Heat of formation + Delta-G solvation = -76.672953 kcal Electronic energy + Delta-G solvation = -23315.244340 eV Core-core repulsion = 20175.511347 eV Total energy + Delta-G solvation = -3139.732993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -39.74433 -38.55096 -35.53645 -34.49226 -32.67783 -30.99213 -30.35864 -29.56180 -28.31708 -26.73349 -23.53381 -22.93528 -22.52089 -21.93607 -20.04514 -19.66578 -18.15804 -16.90007 -16.57884 -15.55967 -15.31610 -15.11306 -14.42712 -14.23896 -13.98251 -13.80427 -13.45396 -13.39734 -13.24860 -13.05521 -12.46302 -12.42536 -12.23775 -12.14923 -11.76223 -11.66562 -11.40288 -11.37814 -11.18413 -11.07230 -10.96651 -10.90275 -10.66291 -10.55173 -10.46254 -10.33376 -10.11953 -9.97691 -9.82671 -9.49890 -8.81061 -8.56511 -7.64554 -6.06350 -4.04584 3.30543 3.36548 3.38377 3.45122 3.89230 4.41666 4.58169 4.62437 4.68140 5.00960 5.06304 5.09089 5.26235 5.28343 5.29642 5.34222 5.42722 5.45570 5.48082 5.56097 5.57176 5.63432 5.68962 5.79295 5.87094 5.88797 5.90682 5.98129 6.02478 6.08909 6.10107 6.15473 6.16612 6.18208 6.20867 6.36477 6.39656 6.44886 6.65683 6.73126 6.76966 7.00102 7.42691 7.64887 8.34484 8.50760 8.96631 9.08801 9.54563 11.07164 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.024285 B = 0.003879 C = 0.003804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.692349 B = 7217.018455 C = 7359.439146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.216 3.784 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.539 6.539 15 C -0.137 4.137 16 C -0.070 4.070 17 H 0.078 0.922 18 C -0.152 4.152 19 C -0.080 4.080 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.120 4.120 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.065 0.935 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.854 -5.703 18.400 21.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.131 4.131 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.417 6.417 15 C -0.177 4.177 16 C -0.089 4.089 17 H 0.096 0.904 18 C -0.209 4.209 19 C -0.098 4.098 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.156 4.156 24 C -0.157 4.157 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.084 0.916 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.507 -5.052 18.225 21.167 hybrid contribution -0.422 0.376 -0.746 0.936 sum -9.929 -4.676 17.479 20.639 Atomic orbital electron populations 1.22229 0.96910 1.01468 1.02165 1.21412 0.93290 0.84026 1.02972 1.47963 1.64281 1.13318 1.07145 1.19609 0.97156 0.93351 0.80341 1.21347 0.95394 1.32717 1.07031 0.90835 1.24860 0.94980 0.95838 0.97379 1.69898 1.15139 1.45124 1.23578 0.86851 0.81487 0.81619 0.79730 1.19942 1.21117 1.19109 1.20429 0.77957 0.86962 0.85186 1.90620 1.45649 1.18242 1.87177 1.21854 1.02829 0.99822 0.93222 1.20899 1.01195 0.94853 0.91911 0.90397 1.21980 0.97670 0.98032 1.03243 1.21195 0.99233 0.95144 0.94255 1.21635 1.01952 0.97992 0.93758 1.21534 0.99455 0.97084 0.97533 1.21539 0.99597 0.96586 0.98031 1.21528 1.01323 0.97825 0.94913 1.21690 0.99988 0.97021 0.97026 0.92961 0.92338 0.92082 0.89946 0.91408 0.95485 0.94708 0.92618 0.89306 0.89855 0.93867 0.93074 0.90423 0.91482 0.91955 0.91676 0.92261 0.92405 0.92528 0.92073 0.92234 0.92276 0.91648 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 37.16 0.38 -1.78 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.25 2.46 -175.06 -0.43 -12.68 16 4 C 0.22 5.34 4.23 -5.19 -0.02 5.32 16 5 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.51 10.22 7.39 -10.99 -0.08 10.14 16 14 O -0.54 -13.03 13.54 5.56 0.08 -12.95 16 15 C -0.14 -1.99 3.51 -27.88 -0.10 -2.08 16 16 C -0.07 -0.95 1.62 -90.62 -0.15 -1.10 16 17 H 0.08 1.25 7.95 -51.93 -0.41 0.84 16 18 C -0.15 -2.12 8.58 37.16 0.32 -1.80 16 19 C -0.08 -0.85 1.77 -90.62 -0.16 -1.01 16 20 C -0.12 -1.16 4.85 -26.73 -0.13 -1.29 16 21 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 22 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 23 C -0.12 -1.04 5.92 -26.73 -0.16 -1.20 16 24 C -0.12 -1.23 4.86 -26.73 -0.13 -1.36 16 25 H 0.05 0.63 7.22 -51.93 -0.37 0.26 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 30 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 31 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.09 1.18 5.43 -51.93 -0.28 0.90 16 34 H 0.08 1.04 7.18 -51.93 -0.37 0.66 16 35 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 37 H 0.08 1.34 5.95 -51.93 -0.31 1.03 16 38 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.65 6.43 -51.93 -0.33 0.31 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 359.83 15.07 5.42 5.42 Total: -1.00 -32.82 359.83 -8.73 -41.54 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.89 Total: -0.81 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -1.01 Total: -10.48 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.34 Total: -39.90 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.82 -8.73 -41.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209813.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.130 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds