Wall clock time and date at job start Tue Mar 31 2020 06:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.46886 * 2 1 4 4 C 1.46497 * 120.00115 * 269.99273 * 3 2 1 5 5 C 1.50702 * 109.47617 * 270.00604 * 4 3 2 6 6 H 1.08005 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00161 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00297 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47282 * 120.00011 * 9 7 5 12 12 H 1.48505 * 109.47214 * 240.00003 * 9 7 5 13 13 C 1.34777 * 120.00245 * 89.99587 * 3 2 1 14 14 O 1.21279 * 120.00335 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00119 * 0.02562 * 13 3 2 16 16 C 1.52996 * 109.47487 * 179.97438 * 15 13 3 17 17 H 1.09001 * 109.46997 * 54.99658 * 16 15 13 18 18 C 1.52997 * 109.47131 * 295.00084 * 16 15 13 19 19 C 1.52992 * 109.47224 * 174.99576 * 16 15 13 20 20 C 1.52997 * 109.47482 * 300.00294 * 19 16 15 21 21 C 1.53000 * 109.47060 * 180.02562 * 20 19 16 22 22 C 1.52996 * 109.47328 * 60.00126 * 21 20 19 23 23 C 1.53002 * 109.46891 * 299.99597 * 22 21 20 24 24 C 1.52997 * 109.46978 * 60.00410 * 23 22 21 25 25 H 1.08998 * 109.46663 * 60.00526 * 1 2 3 26 26 H 1.09001 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47403 * 300.00406 * 1 2 3 28 28 H 1.08994 * 109.47403 * 239.99594 * 2 1 3 29 29 H 1.09007 * 109.46854 * 119.99694 * 2 1 3 30 30 H 1.09009 * 109.47084 * 30.00365 * 4 3 2 31 31 H 1.08996 * 109.47666 * 150.00053 * 4 3 2 32 32 H 0.97002 * 120.00192 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46968 * 59.99811 * 15 13 3 34 34 H 1.08998 * 109.46686 * 299.99862 * 15 13 3 35 35 H 1.09004 * 109.47261 * 59.99694 * 18 16 15 36 36 H 1.09002 * 109.47153 * 179.97438 * 18 16 15 37 37 H 1.09001 * 109.47289 * 299.99950 * 18 16 15 38 38 H 1.08998 * 109.46862 * 60.00859 * 19 16 15 39 39 H 1.09002 * 109.47153 * 59.99783 * 20 19 16 40 40 H 1.09001 * 109.46832 * 299.99974 * 20 19 16 41 41 H 1.09004 * 109.46724 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47194 * 299.99650 * 21 20 19 43 43 H 1.08992 * 109.47554 * 59.99639 * 22 21 20 44 44 H 1.09004 * 109.47108 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.47097 * 180.02562 * 23 22 21 46 46 H 1.09001 * 109.47142 * 300.00176 * 23 22 21 47 47 H 1.09001 * 109.47375 * 59.99908 * 24 23 22 48 48 H 1.09000 * 109.47140 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0956 7 6 4.1492 2.3895 -2.8779 8 7 3.3490 3.1248 -3.6186 9 14 5.9136 2.0966 -3.4167 10 1 6.6016 1.2423 -2.4155 11 1 5.9217 1.4170 -4.7370 12 1 6.6206 3.3980 -3.5256 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3061 2.4724 16 6 2.3239 2.2433 3.6352 17 1 1.7583 3.1690 3.5286 18 6 3.8214 2.5569 3.6262 19 6 1.9522 1.5678 4.9567 20 6 0.4548 1.2542 4.9657 21 6 0.0830 0.5793 6.2875 22 6 0.4146 1.5171 7.4500 23 6 1.9121 1.8306 7.4410 24 6 2.2839 2.5056 6.1193 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.5818 1.6876 -2.0285 31 1 2.0956 3.1410 -1.1385 32 1 3.6751 3.5153 -4.4445 33 1 2.6227 0.4189 2.5300 34 1 0.9443 1.0116 2.5302 35 1 4.0862 3.0382 2.6847 36 1 4.0577 3.2250 4.4545 37 1 4.3871 1.6314 3.7328 38 1 2.5180 0.6423 5.0633 39 1 0.2184 0.5865 4.1372 40 1 -0.1109 2.1798 4.8591 41 1 -0.9838 0.3555 6.2937 42 1 0.6487 -0.3463 6.3946 43 1 -0.1510 2.4426 7.3430 44 1 0.1493 1.0364 8.3917 45 1 2.1485 2.4984 8.2695 46 1 2.4778 0.9050 7.5481 47 1 1.7182 3.4312 6.0122 48 1 3.3507 2.7294 6.1131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209815.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:22 Heat of formation + Delta-G solvation = -81.281853 kcal Electronic energy + Delta-G solvation = -23290.261870 eV Core-core repulsion = 20150.329020 eV Total energy + Delta-G solvation = -3139.932850 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.68213 -38.48532 -35.42776 -34.43759 -32.75247 -30.99266 -30.07630 -29.53223 -28.03890 -26.37615 -23.57676 -22.94808 -22.55766 -22.10608 -20.05976 -19.67478 -18.09712 -16.57316 -16.31807 -15.59248 -15.37318 -14.84079 -14.33889 -14.30398 -14.10892 -13.80887 -13.52017 -13.31843 -13.11944 -12.83261 -12.54353 -12.41792 -12.09997 -11.80930 -11.68163 -11.56872 -11.35748 -11.21982 -11.18678 -10.97086 -10.92072 -10.84202 -10.71024 -10.57397 -10.45668 -10.28524 -10.07671 -9.96466 -9.82069 -9.56937 -8.67962 -8.40965 -7.57582 -6.01383 -4.05764 3.31039 3.38445 3.42214 3.55353 4.02135 4.46831 4.58654 4.62610 4.68155 5.02631 5.09325 5.13418 5.29670 5.32696 5.34472 5.36979 5.42978 5.44602 5.48075 5.56885 5.63478 5.69717 5.75319 5.84814 5.88847 5.90628 5.95471 5.99648 6.06918 6.08067 6.11834 6.17306 6.17937 6.24873 6.27514 6.37490 6.43514 6.53733 6.67962 6.86160 7.14045 7.50257 7.63206 7.96006 8.28158 8.52850 8.95282 9.21078 9.59577 11.06624 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025496 B = 0.003884 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.950820 B = 7208.224131 C = 7885.510396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.246 3.754 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.504 3.496 14 O -0.540 6.540 15 C -0.139 4.139 16 C -0.068 4.068 17 H 0.075 0.925 18 C -0.154 4.154 19 C -0.081 4.081 20 C -0.119 4.119 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.116 4.116 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.641 -7.201 18.985 21.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.562 4.562 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.292 3.708 14 O -0.418 6.418 15 C -0.179 4.179 16 C -0.087 4.087 17 H 0.093 0.907 18 C -0.211 4.211 19 C -0.099 4.099 20 C -0.156 4.156 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.153 4.153 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.430 -6.489 18.785 20.889 hybrid contribution 0.917 -0.280 -0.495 1.079 sum -5.513 -6.769 18.290 20.267 Atomic orbital electron populations 1.22218 0.96959 1.01274 1.02253 1.21380 0.93383 0.84423 1.02513 1.48271 1.63893 1.13144 1.07880 1.19232 0.96116 0.93617 0.78372 1.21487 0.96988 1.31629 1.06089 0.92488 1.24937 0.97790 0.95006 0.96448 1.69945 1.35543 1.33657 1.14327 0.86464 0.84767 0.78033 0.78280 1.19826 1.21009 1.20903 1.20394 0.78252 0.86991 0.85202 1.90618 1.45739 1.18287 1.87195 1.21870 1.02773 0.99702 0.93516 1.20879 0.97687 0.98235 0.91860 0.90666 1.21995 0.94804 1.00879 1.03409 1.21205 0.95745 0.98620 0.94355 1.21678 0.96163 1.00753 0.97002 1.21530 1.00609 0.98532 0.94946 1.21535 0.96493 0.99653 0.98021 1.21537 0.96064 1.00488 0.97562 1.21632 1.01433 0.98515 0.93730 0.92145 0.92299 0.93077 0.90194 0.91768 0.95254 0.94001 0.92842 0.89884 0.89602 0.90086 0.93199 0.93786 0.91422 0.91678 0.91984 0.92351 0.92188 0.92145 0.92535 0.92404 0.92222 0.92046 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.75 2.46 -175.06 -0.43 -13.18 16 4 C 0.25 6.50 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.99 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.50 10.43 7.39 -10.98 -0.08 10.35 16 14 O -0.54 -13.40 13.54 5.56 0.08 -13.33 16 15 C -0.14 -2.05 3.51 -27.88 -0.10 -2.15 16 16 C -0.07 -0.94 1.62 -90.63 -0.15 -1.09 16 17 H 0.07 1.18 7.96 -51.93 -0.41 0.76 16 18 C -0.15 -2.33 8.58 37.16 0.32 -2.01 16 19 C -0.08 -0.87 1.78 -90.62 -0.16 -1.03 16 20 C -0.12 -1.17 4.86 -26.73 -0.13 -1.30 16 21 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 24 C -0.12 -1.17 4.85 -26.73 -0.13 -1.30 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.87 6.44 -51.93 -0.33 0.54 16 30 H 0.03 0.79 8.07 -51.92 -0.42 0.37 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.08 1.13 7.40 -51.93 -0.38 0.75 16 34 H 0.09 1.10 5.22 -51.93 -0.27 0.83 16 35 H 0.08 1.55 5.95 -51.93 -0.31 1.24 16 36 H 0.05 0.67 6.43 -51.93 -0.33 0.33 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.63 6.32 -51.93 -0.33 0.30 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 363.44 15.07 5.48 5.48 Total: -1.00 -31.89 363.44 -9.08 -40.97 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.92 Total: -1.42 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -0.99 Total: -9.42 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.31 Total: -39.35 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.89 -9.08 -40.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209815.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.315 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds