Wall clock time and date at job start Tue Mar 31 2020 05:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 C 1.53003 * 109.46800 * 119.99505 * 2 1 3 5 5 C 1.52994 * 109.47265 * 65.00472 * 4 2 1 6 6 H 1.09008 * 109.46970 * 304.99734 * 5 4 2 7 7 C 1.53001 * 109.47368 * 64.99313 * 5 4 2 8 8 C 1.52997 * 109.47404 * 184.99783 * 5 4 2 9 9 C 1.50701 * 109.47212 * 174.99684 * 8 5 4 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 5 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47305 * 89.99580 * 21 11 9 23 23 C 1.53006 * 117.49935 * 243.61933 * 22 21 11 24 24 C 1.52999 * 59.99917 * 252.51156 * 23 22 21 25 25 H 1.09005 * 109.47125 * 60.00199 * 1 2 3 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47416 * 300.00384 * 1 2 3 28 28 H 1.08997 * 109.47416 * 239.99616 * 2 1 3 29 29 H 1.09001 * 109.47300 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47004 * 299.99875 * 3 2 1 31 31 H 1.08997 * 109.47335 * 59.99566 * 3 2 1 32 32 H 1.09001 * 109.47031 * 304.99735 * 4 2 1 33 33 H 1.09009 * 109.46835 * 185.00247 * 4 2 1 34 34 H 1.08998 * 109.47430 * 180.02562 * 7 5 4 35 35 H 1.08996 * 109.47271 * 300.00893 * 7 5 4 36 36 H 1.09008 * 109.46731 * 60.00275 * 7 5 4 37 37 H 1.09002 * 109.47153 * 54.99686 * 8 5 4 38 38 H 1.09001 * 109.46832 * 294.99876 * 8 5 4 39 39 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 40 40 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 41 41 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 21 11 9 43 43 H 1.09002 * 109.47109 * 329.99455 * 21 11 9 44 44 H 1.08999 * 115.54639 * 29.33009 * 22 21 11 45 45 H 1.08992 * 117.49608 * 0.02562 * 23 22 21 46 46 H 1.08999 * 117.49612 * 145.02191 * 23 22 21 47 47 H 1.08999 * 117.50019 * 252.51009 * 24 23 22 48 48 H 1.09005 * 117.49521 * 107.49113 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1953 1.1882 6 1 0.5562 -2.2706 1.0529 7 6 2.3448 -2.8707 0.0129 8 6 2.0353 -2.8886 2.4920 9 6 1.5284 -4.3078 2.4825 10 8 0.9086 -4.7239 1.5266 11 7 1.7647 -5.1149 3.5357 12 6 1.2724 -6.4946 3.5261 13 6 2.3175 -7.3967 2.9218 14 1 3.2545 -6.9835 2.5788 15 6 2.0775 -8.7495 2.8068 16 7 0.9366 -9.2528 3.2249 17 14 3.3732 -9.8678 2.0584 18 1 4.5585 -9.0616 1.6705 19 1 3.7760 -10.8939 3.0534 20 1 2.8150 -10.5366 0.8559 21 6 2.5138 -4.6125 4.6900 22 6 1.5423 -4.0020 5.7020 23 6 1.6690 -2.5043 5.9883 24 6 2.1196 -3.5242 7.0360 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2615 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0562 -3.9209 -0.0310 35 1 2.0599 -2.3768 -0.9160 36 1 3.4238 -2.7954 0.1482 37 1 1.6008 -2.3533 3.3363 38 1 3.1214 -2.8913 2.5836 39 1 1.0642 -6.8132 4.5475 40 1 0.3585 -6.5503 2.9346 41 1 0.7679 -10.2046 3.1444 42 1 3.0560 -5.4347 5.1571 43 1 3.2212 -3.8514 4.3607 44 1 0.5415 -4.4338 5.7125 45 1 2.4442 -1.9539 5.4553 46 1 0.7515 -1.9505 6.1871 47 1 1.4985 -3.6414 7.9240 48 1 3.1916 -3.6448 7.1925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:21 Heat of formation + Delta-G solvation = -46.202753 kcal Electronic energy + Delta-G solvation = -23137.441930 eV Core-core repulsion = 19999.030224 eV Total energy + Delta-G solvation = -3138.411706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.43483 -37.60690 -36.94282 -34.43594 -33.25747 -32.47079 -28.58708 -27.28667 -27.14009 -26.45904 -25.70938 -22.87806 -22.28058 -20.95716 -20.57302 -19.30919 -18.19026 -16.56801 -16.43191 -15.58920 -15.34735 -14.92613 -14.70865 -14.46659 -14.05560 -13.89046 -13.56552 -13.42713 -12.70212 -12.60932 -12.42898 -12.31892 -12.04489 -11.79188 -11.59839 -11.47661 -11.41354 -11.25518 -11.20055 -11.09334 -10.88531 -10.76431 -10.60576 -10.42387 -10.31709 -10.21666 -10.14573 -10.03689 -9.77071 -9.55835 -8.68010 -8.41057 -7.59936 -6.01628 -4.05938 3.30982 3.38443 3.42051 3.53947 3.84077 4.07280 4.46978 4.73187 4.83986 4.89719 4.94032 5.05213 5.08542 5.23368 5.30717 5.32595 5.41926 5.51962 5.54378 5.64248 5.65285 5.69393 5.70390 5.78782 5.82661 5.90282 5.91888 5.96533 5.98832 6.01791 6.11776 6.13020 6.19175 6.20354 6.28303 6.29880 6.43709 6.50486 6.68962 6.86822 7.13338 7.49575 7.61891 7.95681 8.27595 8.51151 8.94905 9.20080 9.59371 11.06443 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.004775 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.769513 B = 5862.934693 C = 7245.000945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.075 4.075 6 H 0.079 0.921 7 C -0.153 4.153 8 C -0.138 4.138 9 C 0.507 3.493 10 O -0.539 6.539 11 N -0.597 5.597 12 C 0.246 3.754 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.143 3.857 22 C -0.164 4.164 23 C -0.185 4.185 24 C -0.177 4.177 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.048 0.952 36 H 0.043 0.957 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.904 18.919 1.576 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.094 4.094 6 H 0.097 0.903 7 C -0.210 4.210 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.417 6.417 11 N -0.328 5.328 12 C 0.127 3.873 13 C -0.562 4.562 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.019 3.981 22 C -0.183 4.183 23 C -0.222 4.222 24 C -0.215 4.215 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.474 18.495 1.082 18.691 hybrid contribution 0.716 -0.717 -0.170 1.028 sum 3.190 17.778 0.912 18.085 Atomic orbital electron populations 1.21900 0.95399 1.02275 1.01152 1.21157 0.95926 0.95636 0.99037 1.21845 1.00739 0.96393 1.01379 1.21710 1.00507 0.95029 0.97397 1.20916 1.01445 0.92993 0.94067 0.90301 1.21991 0.99037 1.03085 0.96922 1.21820 1.01934 0.94548 0.99490 1.20376 0.80392 0.87049 0.82720 1.90619 1.41290 1.76354 1.33444 1.48197 1.54302 1.14358 1.15969 1.19251 0.95792 0.74774 0.97529 1.21479 1.02169 0.92187 1.40370 0.92486 1.24929 0.95638 0.98042 0.95511 1.69945 1.23181 1.13083 1.47226 0.86470 0.81641 0.80517 0.78955 1.19831 1.21006 1.20912 1.20984 0.92238 0.98683 0.86228 1.22945 1.01883 0.96133 0.97372 1.23038 1.02944 0.92361 1.03850 1.22894 1.01315 1.04203 0.93063 0.93213 0.91940 0.92954 0.90867 0.92923 0.93047 0.92929 0.92236 0.92213 0.90132 0.93298 0.93826 0.89599 0.90036 0.95164 0.93969 0.92842 0.89687 0.91491 0.87475 0.88899 0.89246 0.89055 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 2 C -0.10 -1.00 2.78 -90.62 -0.25 -1.26 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.11 -1.18 4.15 -26.73 -0.11 -1.29 16 5 C -0.08 -1.06 1.90 -90.62 -0.17 -1.23 16 6 H 0.08 1.22 6.16 -51.92 -0.32 0.91 16 7 C -0.15 -2.32 8.70 37.16 0.32 -2.00 16 8 C -0.14 -2.05 3.73 -27.88 -0.10 -2.16 16 9 C 0.51 10.44 7.39 -10.98 -0.08 10.36 16 10 O -0.54 -13.30 13.54 5.56 0.08 -13.22 16 11 N -0.60 -12.57 2.46 -175.06 -0.43 -13.00 16 12 C 0.25 6.44 5.16 -5.19 -0.03 6.41 16 13 C -0.52 -14.89 9.39 -34.44 -0.32 -15.21 16 14 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.14 2.34 5.49 -4.05 -0.02 2.31 16 22 C -0.16 -2.30 5.95 -90.62 -0.54 -2.84 16 23 C -0.18 -2.05 9.18 -26.73 -0.25 -2.29 16 24 C -0.18 -2.00 10.25 -26.73 -0.27 -2.27 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.72 6.46 -51.93 -0.34 0.39 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.78 6.34 -51.93 -0.33 0.45 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 34 H 0.08 1.54 5.95 -51.93 -0.31 1.23 16 35 H 0.05 0.66 6.46 -51.93 -0.34 0.32 16 36 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.09 1.13 6.84 -51.93 -0.36 0.77 16 38 H 0.08 1.11 7.40 -51.93 -0.38 0.73 16 39 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 43 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 44 H 0.11 1.70 8.14 -51.93 -0.42 1.28 16 45 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -31.51 374.88 -9.18 -40.70 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.94 Total: 0.86 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -1.25 Total: -11.93 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.31 Total: -39.04 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.51 -9.18 -40.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.507 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds