Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47030 * 2 1 4 4 C 1.53003 * 109.46800 * 119.99505 * 2 1 3 5 5 C 1.52994 * 109.47265 * 65.00472 * 4 2 1 6 6 H 1.09008 * 109.46970 * 304.99734 * 5 4 2 7 7 C 1.53001 * 109.47368 * 64.99313 * 5 4 2 8 8 C 1.52997 * 109.47404 * 184.99783 * 5 4 2 9 9 C 1.50701 * 109.47212 * 174.99684 * 8 5 4 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 5 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 5 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47162 * 90.00410 * 12 11 9 14 14 H 1.07998 * 119.99576 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99930 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47241 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47303 * 119.99759 * 17 15 13 20 20 H 1.48495 * 109.47340 * 239.99921 * 17 15 13 21 21 C 1.46490 * 120.00111 * 0.02562 * 11 9 8 22 22 C 1.53001 * 109.47305 * 89.99580 * 21 11 9 23 23 C 1.53006 * 117.49935 * 243.61933 * 22 21 11 24 24 C 1.52999 * 59.99917 * 252.51156 * 23 22 21 25 25 H 1.09005 * 109.47125 * 60.00199 * 1 2 3 26 26 H 1.09003 * 109.47272 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47416 * 300.00384 * 1 2 3 28 28 H 1.08997 * 109.47416 * 239.99616 * 2 1 3 29 29 H 1.09001 * 109.47300 * 179.97438 * 3 2 1 30 30 H 1.09005 * 109.47004 * 299.99875 * 3 2 1 31 31 H 1.08997 * 109.47335 * 59.99566 * 3 2 1 32 32 H 1.09001 * 109.47031 * 304.99735 * 4 2 1 33 33 H 1.09009 * 109.46835 * 185.00247 * 4 2 1 34 34 H 1.08998 * 109.47430 * 180.02562 * 7 5 4 35 35 H 1.08996 * 109.47271 * 300.00893 * 7 5 4 36 36 H 1.09008 * 109.46731 * 60.00275 * 7 5 4 37 37 H 1.09002 * 109.47153 * 54.99686 * 8 5 4 38 38 H 1.09001 * 109.46832 * 294.99876 * 8 5 4 39 39 H 1.09000 * 109.47018 * 209.99971 * 12 11 9 40 40 H 1.09000 * 109.47828 * 330.00266 * 12 11 9 41 41 H 0.97001 * 119.99961 * 180.02562 * 16 15 13 42 42 H 1.09006 * 109.47028 * 209.99878 * 21 11 9 43 43 H 1.09002 * 109.47109 * 329.99455 * 21 11 9 44 44 H 1.08999 * 115.54639 * 29.33009 * 22 21 11 45 45 H 1.08992 * 117.49608 * 0.02562 * 23 22 21 46 46 H 1.08999 * 117.49612 * 145.02191 * 23 22 21 47 47 H 1.08999 * 117.50019 * 252.51009 * 24 23 22 48 48 H 1.09005 * 117.49521 * 107.49113 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6352 -2.1953 1.1882 6 1 0.5562 -2.2706 1.0529 7 6 2.3448 -2.8707 0.0129 8 6 2.0353 -2.8886 2.4920 9 6 1.5284 -4.3078 2.4825 10 8 0.9086 -4.7239 1.5266 11 7 1.7647 -5.1149 3.5357 12 6 1.2724 -6.4946 3.5261 13 6 2.3175 -7.3967 2.9218 14 1 3.2545 -6.9835 2.5788 15 6 2.0775 -8.7495 2.8068 16 7 0.9366 -9.2528 3.2249 17 14 3.3732 -9.8678 2.0584 18 1 4.5585 -9.0616 1.6705 19 1 3.7760 -10.8939 3.0534 20 1 2.8150 -10.5366 0.8559 21 6 2.5138 -4.6125 4.6900 22 6 1.5423 -4.0020 5.7020 23 6 1.6690 -2.5043 5.9883 24 6 2.1196 -3.5242 7.0360 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6053 -0.2615 2.1370 33 1 3.1263 -0.6442 1.2953 34 1 2.0562 -3.9209 -0.0310 35 1 2.0599 -2.3768 -0.9160 36 1 3.4238 -2.7954 0.1482 37 1 1.6008 -2.3533 3.3363 38 1 3.1214 -2.8913 2.5836 39 1 1.0642 -6.8132 4.5475 40 1 0.3585 -6.5503 2.9346 41 1 0.7679 -10.2046 3.1444 42 1 3.0560 -5.4347 5.1571 43 1 3.2212 -3.8514 4.3607 44 1 0.5415 -4.4338 5.7125 45 1 2.4442 -1.9539 5.4553 46 1 0.7515 -1.9505 6.1871 47 1 1.4985 -3.6414 7.9240 48 1 3.1916 -3.6448 7.1925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437487.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -62.643729 kcal Electronic energy + Delta-G solvation = -23138.154864 eV Core-core repulsion = 19999.030224 eV Total energy + Delta-G solvation = -3139.124640 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.96227 -38.65458 -38.09698 -36.11777 -34.61321 -34.29871 -30.34189 -28.64449 -27.94803 -27.46987 -27.31021 -24.79600 -23.15749 -22.12899 -21.71474 -20.25756 -19.71444 -18.60822 -17.98779 -17.19719 -16.66418 -16.19979 -16.05744 -15.80174 -15.40424 -14.88901 -14.66214 -14.59368 -14.34168 -14.02311 -13.68983 -13.61886 -13.23958 -13.18697 -12.98433 -12.74491 -12.59756 -12.56776 -12.53600 -12.27155 -12.23168 -12.21459 -12.07056 -11.82736 -11.66435 -11.41743 -11.24947 -11.17954 -11.11688 -10.82308 -10.65678 -10.32006 -9.38547 -8.22718 -6.37760 1.34582 1.37139 1.49004 1.93013 2.30694 2.46501 2.99444 3.06390 3.68620 3.83749 3.92707 3.99140 4.06915 4.13600 4.21794 4.25802 4.34321 4.40043 4.56272 4.69615 4.73581 4.76402 4.78338 4.85394 4.85937 4.87915 4.92355 5.01958 5.03240 5.08896 5.09469 5.11678 5.19205 5.23185 5.26076 5.34379 5.35420 5.38722 5.41373 5.55017 5.58354 5.64541 5.69047 5.88778 6.07121 6.70872 6.86766 7.29113 7.57800 8.84461 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014328 B = 0.004775 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.769513 B = 5862.934693 C = 7245.000945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.100 4.100 3 C -0.142 4.142 4 C -0.099 4.099 5 C -0.073 4.073 6 H 0.056 0.944 7 C -0.150 4.150 8 C -0.122 4.122 9 C 0.495 3.505 10 O -0.592 6.592 11 N -0.603 5.603 12 C 0.264 3.736 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.968 3.032 18 H -0.266 1.266 19 H -0.268 1.268 20 H -0.282 1.282 21 C 0.143 3.857 22 C -0.195 4.195 23 C -0.162 4.162 24 C -0.163 4.163 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.016 0.984 40 H -0.007 1.007 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.077 0.923 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.297 21.638 2.353 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.118 4.118 3 C -0.199 4.199 4 C -0.137 4.137 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.207 4.207 8 C -0.162 4.162 9 C 0.285 3.715 10 O -0.473 6.473 11 N -0.334 5.334 12 C 0.142 3.858 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.792 3.208 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.208 1.208 21 C 0.021 3.979 22 C -0.214 4.214 23 C -0.199 4.199 24 C -0.200 4.200 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.034 0.966 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.134 0.866 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.887 21.250 1.897 21.887 hybrid contribution -0.100 -1.570 -0.404 1.624 sum 4.787 19.680 1.493 20.309 Atomic orbital electron populations 1.21898 0.95851 1.01055 1.01945 1.21157 0.95563 0.96767 0.98357 1.21799 1.01143 0.94953 1.02015 1.21642 1.01496 0.92120 0.98396 1.20897 1.00040 0.95248 0.92960 0.92522 1.21921 0.99973 1.00358 0.98432 1.21828 1.03141 0.90170 1.01049 1.21501 0.79419 0.89124 0.81449 1.90599 1.43569 1.77790 1.35351 1.48208 1.54615 1.12544 1.17988 1.18641 0.93746 0.78028 0.95353 1.21737 1.02316 0.93043 1.40704 0.92892 1.25873 0.97898 0.99694 0.95764 1.70069 1.25111 1.13691 1.48107 0.85367 0.78819 0.78453 0.78169 1.19028 1.19347 1.20784 1.21194 0.92739 0.99000 0.84999 1.22650 1.00221 0.99126 0.99439 1.23181 1.03882 0.90272 1.02520 1.23012 1.02170 1.02854 0.92013 0.92483 0.94142 0.92158 0.91761 0.92228 0.92610 0.92175 0.90699 0.90704 0.94797 0.92102 0.92403 0.86943 0.87617 0.96587 0.98856 0.92465 0.91265 0.88131 0.90502 0.86646 0.88270 0.88360 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.95 71.98 0.64 -2.23 16 2 C -0.10 -1.78 2.78 -10.79 -0.03 -1.81 16 3 C -0.14 -1.95 9.19 71.98 0.66 -1.29 16 4 C -0.10 -1.83 4.15 30.59 0.13 -1.70 16 5 C -0.07 -1.95 1.90 -10.80 -0.02 -1.97 16 6 H 0.06 1.79 6.16 -2.38 -0.01 1.78 16 7 C -0.15 -4.53 8.70 71.98 0.63 -3.90 16 8 C -0.12 -3.42 3.73 29.85 0.11 -3.31 16 9 C 0.50 20.98 7.39 87.66 0.65 21.62 16 10 O -0.59 -31.13 13.54 -3.03 -0.04 -31.17 16 11 N -0.60 -26.33 2.46 -826.16 -2.03 -28.36 16 12 C 0.26 14.76 5.16 85.64 0.44 15.21 16 13 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 15 C 0.01 0.38 5.46 84.65 0.46 0.84 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.97 45.86 29.54 68.60 2.03 47.89 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 C 0.14 4.59 5.49 86.38 0.47 5.07 16 22 C -0.19 -5.30 5.95 -10.79 -0.06 -5.37 16 23 C -0.16 -2.99 9.18 30.60 0.28 -2.71 16 24 C -0.16 -3.23 10.25 30.59 0.31 -2.92 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.04 0.94 6.46 -2.39 -0.02 0.93 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 1.26 6.34 -2.39 -0.02 1.25 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.03 1.34 5.95 -2.39 -0.01 1.33 16 35 H 0.06 1.64 6.46 -2.39 -0.02 1.62 16 36 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.11 2.57 6.84 -2.39 -0.02 2.55 16 38 H 0.11 2.50 7.40 -2.39 -0.02 2.48 16 39 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 40 H -0.01 -0.43 7.42 -2.39 -0.02 -0.45 16 41 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 42 H 0.07 2.40 8.07 -2.38 -0.02 2.38 16 43 H 0.10 2.50 6.17 -2.39 -0.01 2.48 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.12 1.66 7.87 -2.39 -0.02 1.64 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 48 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 Total: -1.00 -74.05 374.88 6.05 -68.00 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.90 Total: 17.19 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 4.92 Total: -16.18 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.74 Total: -85.72 kcal Atomic # 8 Polarization: -31.13 SS G_CDS: -0.04 Total: -31.17 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -74.05 6.05 -68.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437487.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.352 kcal (2) G-P(sol) polarization free energy of solvation -74.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds