Wall clock time and date at job start Tue Mar 31 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.52994 * 109.47224 * 119.99835 * 2 1 3 5 5 C 1.53001 * 109.47205 * 174.26746 * 4 2 1 6 6 H 1.09000 * 109.46648 * 54.16379 * 5 4 2 7 7 C 1.52997 * 109.47358 * 294.16061 * 5 4 2 8 8 C 1.53003 * 109.47377 * 174.15713 * 5 4 2 9 9 C 1.50697 * 109.47310 * 185.00338 * 8 5 4 10 10 O 1.21280 * 119.99654 * 0.02562 * 9 8 5 11 11 N 1.34769 * 120.00134 * 180.02562 * 9 8 5 12 12 C 1.46505 * 120.00303 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47321 * 89.99219 * 12 11 9 14 14 H 1.08007 * 120.00113 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00008 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00406 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00170 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47236 * 59.99849 * 17 15 13 19 19 H 1.48499 * 109.47469 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47134 * 300.00031 * 17 15 13 21 21 C 1.46502 * 120.00050 * 0.02562 * 11 9 8 22 22 C 1.52994 * 109.47310 * 89.99842 * 21 11 9 23 23 C 1.52999 * 117.50376 * 243.62181 * 22 21 11 24 24 C 1.53000 * 60.00073 * 252.51381 * 23 22 21 25 25 H 1.09004 * 109.47135 * 295.04148 * 1 2 3 26 26 H 1.08997 * 109.47397 * 55.04241 * 1 2 3 27 27 H 1.08996 * 109.47110 * 175.04576 * 1 2 3 28 28 H 1.09000 * 109.47043 * 240.00307 * 2 1 3 29 29 H 1.09006 * 109.46713 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47416 * 300.00282 * 3 2 1 31 31 H 1.09000 * 109.47049 * 60.00310 * 3 2 1 32 32 H 1.09010 * 109.46898 * 54.27624 * 4 2 1 33 33 H 1.08991 * 109.47467 * 294.27296 * 4 2 1 34 34 H 1.09004 * 109.47239 * 55.17270 * 7 5 4 35 35 H 1.09002 * 109.47120 * 175.16461 * 7 5 4 36 36 H 1.09001 * 109.47553 * 295.16906 * 7 5 4 37 37 H 1.08999 * 109.47009 * 305.00949 * 8 5 4 38 38 H 1.09007 * 109.46496 * 65.00299 * 8 5 4 39 39 H 1.08996 * 109.46909 * 210.00342 * 12 11 9 40 40 H 1.09005 * 109.46761 * 329.99614 * 12 11 9 41 41 H 0.96996 * 120.00293 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47197 * 210.00634 * 21 11 9 43 43 H 1.09007 * 109.46801 * 329.99637 * 21 11 9 44 44 H 1.08999 * 115.54728 * 29.33948 * 22 21 11 45 45 H 1.09004 * 117.49310 * 0.02562 * 23 22 21 46 46 H 1.08989 * 117.49989 * 145.01903 * 23 22 21 47 47 H 1.08997 * 117.49284 * 252.50828 * 24 23 22 48 48 H 1.09002 * 117.50165 * 107.49361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5632 -0.8472 1.1792 6 1 4.0024 0.1380 1.0223 7 6 3.9461 -1.7672 0.0183 8 6 4.0871 -1.4359 2.4907 9 6 5.5939 -1.4460 2.4703 10 8 6.1901 -1.0235 1.5024 11 7 6.2789 -1.9245 3.5277 12 6 7.7438 -1.9339 3.5081 13 6 8.2621 -0.6389 4.0784 14 1 7.5696 0.1156 4.4216 15 6 9.6203 -0.4171 4.1622 16 7 10.4636 -1.3356 3.7439 17 14 10.2628 1.1878 4.8697 18 1 9.7880 1.3372 6.2688 19 1 11.7476 1.1789 4.8487 20 1 9.7635 2.3236 4.0536 21 6 5.5588 -2.4354 4.6967 22 6 5.2918 -3.9312 4.5177 23 6 3.8327 -4.3829 4.4290 24 6 4.6500 -4.6793 5.6879 25 1 -0.3633 0.4350 0.9311 26 1 -0.3634 0.5888 -0.8422 27 1 -0.3633 -1.0238 -0.0887 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.5954 -1.7151 1.3019 33 1 1.7629 -0.1516 2.1362 34 1 3.5006 -1.3935 -0.9037 35 1 5.0310 -1.7890 -0.0854 36 1 3.5797 -2.7744 0.2167 37 1 3.7390 -0.8285 3.3262 38 1 3.7184 -2.4554 2.6042 39 1 8.1098 -2.7673 4.1076 40 1 8.0928 -2.0441 2.4813 41 1 11.4191 -1.1794 3.8024 42 1 6.1608 -2.2783 5.5916 43 1 4.6110 -1.9068 4.7991 44 1 6.0234 -4.4706 3.9162 45 1 3.0629 -3.6142 4.4977 46 1 3.6040 -5.2194 3.7688 47 1 4.9590 -5.7110 5.8559 48 1 4.4179 -4.1058 6.5854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103437488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:24 Heat of formation + Delta-G solvation = -46.029423 kcal Electronic energy + Delta-G solvation = -23131.530648 eV Core-core repulsion = 19993.126459 eV Total energy + Delta-G solvation = -3138.404190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.43206 -37.60273 -36.94057 -34.43589 -33.26250 -32.46918 -28.59192 -27.27513 -27.14272 -26.47513 -25.71391 -22.86832 -22.28121 -20.96944 -20.54930 -19.31597 -18.20821 -16.55888 -16.43340 -15.51318 -15.33950 -15.02683 -14.73885 -14.42278 -14.09068 -13.86843 -13.54203 -13.38369 -12.75668 -12.63360 -12.34450 -12.29506 -12.20103 -11.69413 -11.67551 -11.42431 -11.39194 -11.22029 -11.21110 -11.10963 -10.87580 -10.82315 -10.60520 -10.40970 -10.29368 -10.22055 -10.14713 -10.05801 -9.77252 -9.58107 -8.68621 -8.40104 -7.59639 -6.01087 -4.05640 3.33414 3.37847 3.40346 3.54384 3.84182 4.07441 4.47268 4.73224 4.84325 4.89279 4.93974 5.05727 5.09167 5.21955 5.31165 5.32965 5.42080 5.52173 5.55305 5.63819 5.65274 5.68738 5.69887 5.78979 5.87237 5.88720 5.90931 5.96715 5.97243 6.01726 6.12369 6.12882 6.18954 6.19456 6.28104 6.28382 6.42895 6.50654 6.70060 6.80328 7.13529 7.49645 7.61759 7.95915 8.27900 8.51395 8.94650 9.20337 9.59553 11.06917 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.004888 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.436180 B = 5726.865696 C = 7180.585496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.151 4.151 4 C -0.109 4.109 5 C -0.077 4.077 6 H 0.080 0.920 7 C -0.151 4.151 8 C -0.138 4.138 9 C 0.507 3.493 10 O -0.539 6.539 11 N -0.597 5.597 12 C 0.247 3.753 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.277 1.277 21 C 0.143 3.857 22 C -0.164 4.164 23 C -0.185 4.185 24 C -0.177 4.177 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.042 0.958 41 H 0.263 0.737 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.830 -2.926 -1.342 19.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.146 4.146 5 C -0.095 4.095 6 H 0.098 0.902 7 C -0.208 4.208 8 C -0.178 4.178 9 C 0.295 3.705 10 O -0.417 6.417 11 N -0.328 5.328 12 C 0.127 3.873 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.019 3.981 22 C -0.183 4.183 23 C -0.222 4.222 24 C -0.215 4.215 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.125 0.875 45 H 0.111 0.889 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.279 -2.736 -1.872 18.577 hybrid contribution 0.430 0.744 0.593 1.044 sum -17.849 -1.992 -1.279 18.005 Atomic orbital electron populations 1.21845 0.95743 1.01323 1.01448 1.21163 0.95039 0.96548 0.98990 1.21908 1.01877 0.95823 1.01180 1.21704 0.95450 1.00072 0.97420 1.20923 0.93999 1.00589 0.94024 0.90208 1.21972 1.03737 0.97998 0.97117 1.21828 0.94084 1.02690 0.99185 1.20369 0.89206 0.78038 0.82923 1.90619 1.70932 1.46724 1.33426 1.48200 1.09176 1.60146 1.15320 1.19238 0.72463 0.96903 0.98653 1.21404 0.91638 1.02191 1.41153 0.92608 1.24921 0.96738 0.96863 0.95528 1.69923 1.02573 1.33916 1.47041 0.86585 0.77610 0.83953 0.79418 1.20283 1.21198 1.20218 1.20985 0.96831 0.89989 0.90331 1.22938 0.95766 0.97368 1.02229 1.23035 0.94542 1.03470 1.01129 1.22895 1.04651 1.01163 0.92776 0.92905 0.93024 0.92964 0.90884 0.91904 0.93198 0.92934 0.92203 0.92227 0.93262 0.90399 0.93829 0.90088 0.89532 0.95176 0.93976 0.92724 0.89690 0.91499 0.87482 0.88907 0.89254 0.89060 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 37.16 0.34 -0.91 16 2 C -0.10 -1.01 2.80 -90.62 -0.25 -1.26 16 3 C -0.15 -1.59 8.97 37.16 0.33 -1.26 16 4 C -0.11 -1.19 4.13 -26.73 -0.11 -1.30 16 5 C -0.08 -1.07 1.92 -90.62 -0.17 -1.25 16 6 H 0.08 1.28 6.15 -51.93 -0.32 0.96 16 7 C -0.15 -2.19 8.75 37.16 0.33 -1.86 16 8 C -0.14 -2.05 3.73 -27.88 -0.10 -2.16 16 9 C 0.51 10.46 7.41 -10.99 -0.08 10.37 16 10 O -0.54 -13.32 13.55 5.56 0.08 -13.25 16 11 N -0.60 -12.59 2.46 -175.06 -0.43 -13.02 16 12 C 0.25 6.47 5.16 -5.19 -0.03 6.45 16 13 C -0.52 -14.98 9.39 -34.45 -0.32 -15.30 16 14 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 17 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 21 C 0.14 2.34 5.49 -4.04 -0.02 2.32 16 22 C -0.16 -2.30 5.95 -90.62 -0.54 -2.84 16 23 C -0.18 -2.05 9.18 -26.73 -0.25 -2.30 16 24 C -0.18 -2.01 10.25 -26.73 -0.27 -2.28 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 6.26 -51.93 -0.33 0.45 16 29 H 0.06 0.76 6.47 -51.93 -0.34 0.42 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.63 6.28 -51.93 -0.33 0.30 16 35 H 0.08 1.40 6.06 -51.93 -0.31 1.08 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 1.10 7.40 -51.93 -0.38 0.71 16 38 H 0.09 1.14 6.84 -51.92 -0.36 0.79 16 39 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.08 1.46 8.07 -51.93 -0.42 1.05 16 43 H 0.07 0.93 6.18 -51.93 -0.32 0.61 16 44 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 45 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 46 H 0.09 0.93 8.14 -51.94 -0.42 0.51 16 47 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 374.83 15.07 5.65 5.65 Total: -1.00 -31.54 374.83 -9.17 -40.72 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.93 Total: 0.87 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -1.25 Total: -11.90 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.31 Total: -39.10 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.54 -9.17 -40.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.312 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds