Wall clock time and date at job start Tue Mar 31 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.52994 * 109.47224 * 119.99835 * 2 1 3 5 5 C 1.53001 * 109.47205 * 174.26746 * 4 2 1 6 6 H 1.09000 * 109.46648 * 54.16379 * 5 4 2 7 7 C 1.52997 * 109.47358 * 294.16061 * 5 4 2 8 8 C 1.53003 * 109.47377 * 174.15713 * 5 4 2 9 9 C 1.50697 * 109.47310 * 185.00338 * 8 5 4 10 10 O 1.21280 * 119.99654 * 0.02562 * 9 8 5 11 11 N 1.34769 * 120.00134 * 180.02562 * 9 8 5 12 12 C 1.46505 * 120.00303 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47321 * 89.99219 * 12 11 9 14 14 H 1.08007 * 120.00113 * 0.02562 * 13 12 11 15 15 C 1.37869 * 120.00008 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00406 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00170 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47236 * 59.99849 * 17 15 13 19 19 H 1.48499 * 109.47469 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47134 * 300.00031 * 17 15 13 21 21 C 1.46502 * 120.00050 * 0.02562 * 11 9 8 22 22 C 1.52994 * 109.47310 * 89.99842 * 21 11 9 23 23 C 1.52999 * 117.50376 * 243.62181 * 22 21 11 24 24 C 1.53000 * 60.00073 * 252.51381 * 23 22 21 25 25 H 1.09004 * 109.47135 * 295.04148 * 1 2 3 26 26 H 1.08997 * 109.47397 * 55.04241 * 1 2 3 27 27 H 1.08996 * 109.47110 * 175.04576 * 1 2 3 28 28 H 1.09000 * 109.47043 * 240.00307 * 2 1 3 29 29 H 1.09006 * 109.46713 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47416 * 300.00282 * 3 2 1 31 31 H 1.09000 * 109.47049 * 60.00310 * 3 2 1 32 32 H 1.09010 * 109.46898 * 54.27624 * 4 2 1 33 33 H 1.08991 * 109.47467 * 294.27296 * 4 2 1 34 34 H 1.09004 * 109.47239 * 55.17270 * 7 5 4 35 35 H 1.09002 * 109.47120 * 175.16461 * 7 5 4 36 36 H 1.09001 * 109.47553 * 295.16906 * 7 5 4 37 37 H 1.08999 * 109.47009 * 305.00949 * 8 5 4 38 38 H 1.09007 * 109.46496 * 65.00299 * 8 5 4 39 39 H 1.08996 * 109.46909 * 210.00342 * 12 11 9 40 40 H 1.09005 * 109.46761 * 329.99614 * 12 11 9 41 41 H 0.96996 * 120.00293 * 179.97438 * 16 15 13 42 42 H 1.08999 * 109.47197 * 210.00634 * 21 11 9 43 43 H 1.09007 * 109.46801 * 329.99637 * 21 11 9 44 44 H 1.08999 * 115.54728 * 29.33948 * 22 21 11 45 45 H 1.09004 * 117.49310 * 0.02562 * 23 22 21 46 46 H 1.08989 * 117.49989 * 145.01903 * 23 22 21 47 47 H 1.08997 * 117.49284 * 252.50828 * 24 23 22 48 48 H 1.09002 * 117.50165 * 107.49361 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5632 -0.8472 1.1792 6 1 4.0024 0.1380 1.0223 7 6 3.9461 -1.7672 0.0183 8 6 4.0871 -1.4359 2.4907 9 6 5.5939 -1.4460 2.4703 10 8 6.1901 -1.0235 1.5024 11 7 6.2789 -1.9245 3.5277 12 6 7.7438 -1.9339 3.5081 13 6 8.2621 -0.6389 4.0784 14 1 7.5696 0.1156 4.4216 15 6 9.6203 -0.4171 4.1622 16 7 10.4636 -1.3356 3.7439 17 14 10.2628 1.1878 4.8697 18 1 9.7880 1.3372 6.2688 19 1 11.7476 1.1789 4.8487 20 1 9.7635 2.3236 4.0536 21 6 5.5588 -2.4354 4.6967 22 6 5.2918 -3.9312 4.5177 23 6 3.8327 -4.3829 4.4290 24 6 4.6500 -4.6793 5.6879 25 1 -0.3633 0.4350 0.9311 26 1 -0.3634 0.5888 -0.8422 27 1 -0.3633 -1.0238 -0.0887 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.5954 -1.7151 1.3019 33 1 1.7629 -0.1516 2.1362 34 1 3.5006 -1.3935 -0.9037 35 1 5.0310 -1.7890 -0.0854 36 1 3.5797 -2.7744 0.2167 37 1 3.7390 -0.8285 3.3262 38 1 3.7184 -2.4554 2.6042 39 1 8.1098 -2.7673 4.1076 40 1 8.0928 -2.0441 2.4813 41 1 11.4191 -1.1794 3.8024 42 1 6.1608 -2.2783 5.5916 43 1 4.6110 -1.9068 4.7991 44 1 6.0234 -4.4706 3.9162 45 1 3.0629 -3.6142 4.4977 46 1 3.6040 -5.2194 3.7688 47 1 4.9590 -5.7110 5.8559 48 1 4.4179 -4.1058 6.5854 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103437488.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:23 Heat of formation + Delta-G solvation = -62.502450 kcal Electronic energy + Delta-G solvation = -23132.244972 eV Core-core repulsion = 19993.126459 eV Total energy + Delta-G solvation = -3139.118514 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96019 -38.65052 -38.09929 -36.11883 -34.61334 -34.30415 -30.34288 -28.64186 -27.95427 -27.48083 -27.30397 -24.78807 -23.16425 -22.14481 -21.68104 -20.26125 -19.74620 -18.59968 -17.98021 -17.16462 -16.59659 -16.34592 -16.11474 -15.76471 -15.32245 -14.91754 -14.64265 -14.57432 -14.31895 -14.07436 -13.69383 -13.61211 -13.31855 -13.08110 -12.94356 -12.86680 -12.59058 -12.55152 -12.50848 -12.25246 -12.24538 -12.17093 -12.09711 -11.83844 -11.70123 -11.41922 -11.22300 -11.20008 -11.11769 -10.82748 -10.64763 -10.32788 -9.38236 -8.22422 -6.37780 1.34908 1.39545 1.46818 1.93213 2.30562 2.46709 2.99500 3.06543 3.68454 3.82950 3.92187 4.00709 4.07101 4.12706 4.19547 4.27658 4.34113 4.39858 4.56150 4.69359 4.75206 4.76414 4.78301 4.84434 4.85783 4.88657 4.90407 5.01589 5.02301 5.08660 5.09438 5.11767 5.19630 5.23129 5.25666 5.34478 5.35440 5.38576 5.40515 5.54668 5.57886 5.65177 5.68936 5.88693 6.07122 6.70394 6.86761 7.29054 7.57892 8.84394 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013334 B = 0.004888 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.436180 B = 5726.865696 C = 7180.585496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.100 4.100 3 C -0.151 4.151 4 C -0.099 4.099 5 C -0.074 4.074 6 H 0.052 0.948 7 C -0.147 4.147 8 C -0.123 4.123 9 C 0.495 3.505 10 O -0.592 6.592 11 N -0.603 5.603 12 C 0.265 3.735 13 C -0.542 4.542 14 H 0.053 0.947 15 C 0.007 3.993 16 N -0.930 5.930 17 Si 0.967 3.033 18 H -0.259 1.259 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.143 3.857 22 C -0.194 4.194 23 C -0.162 4.162 24 C -0.163 4.163 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.016 0.984 40 H -0.007 1.007 41 H 0.267 0.733 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.115 0.885 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.194 -2.674 0.213 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.208 4.208 4 C -0.137 4.137 5 C -0.093 4.093 6 H 0.071 0.929 7 C -0.204 4.204 8 C -0.162 4.162 9 C 0.285 3.715 10 O -0.473 6.473 11 N -0.334 5.334 12 C 0.143 3.857 13 C -0.581 4.581 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.791 3.209 18 H -0.183 1.183 19 H -0.203 1.203 20 H -0.203 1.203 21 C 0.021 3.979 22 C -0.214 4.214 23 C -0.198 4.198 24 C -0.201 4.201 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.131 0.869 39 H 0.034 0.966 40 H 0.011 0.989 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.095 0.905 45 H 0.133 0.867 46 H 0.117 0.883 47 H 0.116 0.884 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -21.685 -2.506 -0.284 21.832 hybrid contribution 1.505 0.615 0.065 1.627 sum -20.180 -1.891 -0.219 20.270 Atomic orbital electron populations 1.21798 0.94002 1.02090 1.02014 1.21164 0.96407 0.95795 0.98428 1.21909 1.00355 0.96697 1.01881 1.21638 0.92341 1.01439 0.98245 1.20904 0.96437 0.98821 0.93173 0.92934 1.21899 1.00856 0.99284 0.98372 1.21839 0.88893 1.04797 1.00669 1.21498 0.91744 0.76566 0.81683 1.90599 1.72563 1.48853 1.35331 1.48210 1.07291 1.60527 1.17325 1.18629 0.76214 0.95772 0.95077 1.21688 0.92171 1.02827 1.41418 0.92878 1.25872 0.96963 1.00626 0.95705 1.70053 1.02964 1.36035 1.47896 0.85476 0.77226 0.78885 0.79278 1.18337 1.20292 1.20340 1.21197 0.97219 0.91887 0.87638 1.22642 0.97844 0.95721 1.05186 1.23177 0.92408 1.03794 1.00459 1.23012 1.03006 1.01187 0.92852 0.92292 0.92589 0.92082 0.91529 0.94256 0.92411 0.92372 0.90361 0.91052 0.91927 0.94809 0.92205 0.87626 0.86903 0.96603 0.98876 0.92439 0.91271 0.88117 0.90518 0.86661 0.88273 0.88364 0.87341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.10 -1.79 2.80 -10.79 -0.03 -1.82 16 3 C -0.15 -3.02 8.97 71.98 0.65 -2.37 16 4 C -0.10 -1.84 4.13 30.59 0.13 -1.72 16 5 C -0.07 -2.01 1.92 -10.79 -0.02 -2.03 16 6 H 0.05 1.72 6.15 -2.39 -0.01 1.70 16 7 C -0.15 -4.25 8.75 71.98 0.63 -3.62 16 8 C -0.12 -3.43 3.73 29.85 0.11 -3.32 16 9 C 0.50 21.01 7.41 87.66 0.65 21.66 16 10 O -0.59 -31.23 13.55 -3.03 -0.04 -31.27 16 11 N -0.60 -26.36 2.46 -826.16 -2.03 -28.39 16 12 C 0.26 14.83 5.16 85.63 0.44 15.27 16 13 C -0.54 -32.16 9.39 25.60 0.24 -31.92 16 14 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 15 C 0.01 0.42 5.46 84.65 0.46 0.88 16 16 N -0.93 -57.71 13.29 21.44 0.28 -57.43 16 17 Si 0.97 45.81 29.54 68.60 2.03 47.84 16 18 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 C 0.14 4.59 5.49 86.38 0.47 5.07 16 22 C -0.19 -5.29 5.95 -10.80 -0.06 -5.36 16 23 C -0.16 -2.99 9.18 30.59 0.28 -2.71 16 24 C -0.16 -3.24 10.25 30.59 0.31 -2.92 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 1.28 6.26 -2.39 -0.01 1.27 16 29 H 0.04 0.96 6.47 -2.38 -0.02 0.94 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.59 6.28 -2.38 -0.01 1.58 16 35 H 0.03 1.27 6.06 -2.39 -0.01 1.26 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.11 2.49 7.40 -2.39 -0.02 2.47 16 38 H 0.11 2.59 6.84 -2.38 -0.02 2.58 16 39 H 0.02 0.92 8.07 -2.39 -0.02 0.90 16 40 H -0.01 -0.45 7.42 -2.38 -0.02 -0.46 16 41 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 42 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 43 H 0.10 2.50 6.18 -2.38 -0.01 2.48 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.12 1.66 7.87 -2.38 -0.02 1.64 16 46 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -74.17 374.83 6.06 -68.11 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 0.90 Total: 17.34 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 4.92 Total: -16.20 kcal Atomic # 7 Polarization: -84.07 SS G_CDS: -1.74 Total: -85.81 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.04 Total: -31.27 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -74.17 6.06 -68.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103437488.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.603 kcal (2) G-P(sol) polarization free energy of solvation -74.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds