Wall clock time and date at job start Tue Mar 31 2020 06:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47122 * 2 1 4 4 C 1.52997 * 109.47128 * 120.00436 * 2 1 3 5 5 C 1.50696 * 109.47106 * 294.99610 * 4 2 1 6 6 O 1.21284 * 120.00064 * 0.02562 * 5 4 2 7 7 N 1.34783 * 120.00310 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00107 * 179.97438 * 7 5 4 9 9 C 1.50706 * 109.47128 * 90.00402 * 8 7 5 10 10 H 1.08000 * 119.99302 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00436 * 179.72498 * 9 8 7 12 12 N 1.31514 * 120.00481 * 180.02562 * 11 9 8 13 13 Si 1.86801 * 119.99745 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47209 * 90.00365 * 13 11 9 15 15 H 1.48506 * 109.47294 * 210.00213 * 13 11 9 16 16 H 1.48501 * 109.47275 * 330.00116 * 13 11 9 17 17 C 1.46497 * 119.99658 * 0.02562 * 7 5 4 18 18 C 1.53008 * 109.46926 * 269.99594 * 17 7 5 19 19 C 1.52995 * 117.49765 * 243.62387 * 18 17 7 20 20 C 1.52997 * 60.00108 * 252.51033 * 19 18 17 21 21 C 1.53004 * 109.46626 * 240.00219 * 2 1 3 22 22 C 1.52997 * 109.47240 * 299.99651 * 21 2 1 23 23 C 1.52997 * 109.47190 * 60.00254 * 21 2 1 24 24 C 1.53007 * 109.46666 * 179.97438 * 21 2 1 25 25 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47047 * 299.99894 * 1 2 3 27 27 H 1.09002 * 109.47459 * 59.99937 * 1 2 3 28 28 H 1.08999 * 109.47026 * 174.99841 * 4 2 1 29 29 H 1.08997 * 109.47228 * 55.00015 * 4 2 1 30 30 H 1.09001 * 109.47786 * 330.00675 * 8 7 5 31 31 H 1.08998 * 109.47558 * 210.00538 * 8 7 5 32 32 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 33 33 H 1.08998 * 109.47569 * 29.99343 * 17 7 5 34 34 H 1.08997 * 109.47185 * 150.00014 * 17 7 5 35 35 H 1.09004 * 115.54514 * 29.33287 * 18 17 7 36 36 H 1.08995 * 117.50145 * 359.97438 * 19 18 17 37 37 H 1.08999 * 117.49978 * 145.02090 * 19 18 17 38 38 H 1.09000 * 117.49824 * 252.51694 * 20 19 18 39 39 H 1.09002 * 117.50089 * 107.48886 * 20 19 18 40 40 H 1.08997 * 109.46699 * 60.00423 * 22 21 2 41 41 H 1.09005 * 109.46847 * 179.97438 * 22 21 2 42 42 H 1.09000 * 109.47775 * 300.00419 * 22 21 2 43 43 H 1.08998 * 109.47474 * 59.99658 * 23 21 2 44 44 H 1.09005 * 109.46887 * 179.97438 * 23 21 2 45 45 H 1.08998 * 109.47329 * 299.99299 * 23 21 2 46 46 H 1.09000 * 109.46823 * 60.00515 * 24 21 2 47 47 H 1.09001 * 109.46663 * 179.97438 * 24 21 2 48 48 H 1.08994 * 109.47589 * 300.00197 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4765 6 8 1.0110 1.0869 2.3633 7 7 1.9845 -0.3921 3.7002 8 6 1.5975 0.3648 4.8932 9 6 0.2501 -0.1094 5.3738 10 1 -0.2663 -0.8956 4.8432 11 6 -0.3209 0.4568 6.4937 12 7 -1.4964 0.0427 6.9134 13 14 0.5760 1.8114 7.4159 14 1 0.1891 3.1313 6.8560 15 1 0.2100 1.7572 8.8541 16 1 2.0417 1.6224 7.2706 17 6 2.7454 -1.6365 3.8369 18 6 1.7776 -2.8155 3.9566 19 6 1.7907 -3.6103 5.2639 20 6 2.3786 -4.2221 3.9908 21 6 2.0399 -0.7212 -1.2493 22 6 1.5299 -2.1637 -1.2493 23 6 1.5299 0.0001 -2.4985 24 6 3.5699 -0.7207 -1.2497 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 3.1263 -0.7996 1.2055 29 1 1.6054 -1.7199 1.2950 30 1 1.5433 1.4256 4.6489 31 1 2.3381 0.2101 5.6778 32 1 -1.8979 0.4408 7.7015 33 1 3.3784 -1.7736 2.9602 34 1 3.3680 -1.5854 4.7302 35 1 0.8191 -2.6898 3.4531 36 1 2.4890 -3.2935 6.0385 37 1 0.8405 -4.0076 5.6208 38 1 1.8152 -5.0219 3.5101 39 1 3.4635 -4.3076 3.9279 40 1 0.4399 -2.1637 -1.2493 41 1 1.8928 -2.6774 -2.1397 42 1 1.8932 -2.6777 -0.3594 43 1 1.8932 1.0277 -2.4985 44 1 1.8935 -0.5135 -3.3885 45 1 0.4399 0.0001 -2.4985 46 1 3.9336 -1.2344 -0.3597 47 1 3.9332 -1.2349 -2.1395 48 1 3.9330 0.3070 -1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108812707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:59 Heat of formation + Delta-G solvation = -32.132089 kcal Electronic energy + Delta-G solvation = -23784.030293 eV Core-core repulsion = 20646.228737 eV Total energy + Delta-G solvation = -3137.801556 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75732 -38.05793 -36.91894 -34.39668 -32.48379 -31.62411 -29.13841 -28.05658 -27.31987 -26.48649 -25.67247 -23.09296 -21.98217 -21.66625 -20.51407 -18.46685 -17.95863 -16.84913 -16.54504 -15.71041 -15.04987 -14.94052 -14.52875 -14.21775 -14.09175 -13.86901 -13.67982 -13.33711 -12.81736 -12.58572 -12.34732 -12.23216 -11.96788 -11.86042 -11.77242 -11.66636 -11.54334 -11.33020 -11.15898 -11.04112 -10.99700 -10.83048 -10.51346 -10.25297 -10.21993 -10.17757 -10.09803 -9.94572 -9.55678 -9.40930 -8.80075 -8.52938 -7.66526 -6.02844 -3.99643 3.31531 3.37235 3.39596 3.41371 3.85365 4.23167 4.44070 4.73952 4.79943 4.85637 5.06387 5.18646 5.23557 5.30721 5.31814 5.40871 5.45784 5.56746 5.63056 5.65469 5.70834 5.74849 5.75930 5.86489 5.88230 5.88447 5.92298 6.02141 6.04934 6.05947 6.11769 6.17879 6.24614 6.32584 6.33045 6.46198 6.48118 6.64352 6.66570 6.76684 6.88036 7.00618 7.42274 7.67546 8.32771 8.54255 9.01027 9.08376 9.58425 11.10675 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017020 B = 0.005370 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.723845 B = 5212.824710 C = 6105.045244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.061 4.061 3 H 0.074 0.926 4 C -0.139 4.139 5 C 0.508 3.492 6 O -0.538 6.538 7 N -0.593 5.593 8 C 0.216 3.784 9 C -0.515 4.515 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.900 5.900 13 Si 0.873 3.127 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.267 1.267 17 C 0.147 3.853 18 C -0.153 4.153 19 C -0.161 4.161 20 C -0.191 4.191 21 C -0.066 4.066 22 C -0.145 4.145 23 C -0.141 4.141 24 C -0.144 4.144 25 H 0.048 0.952 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.026 0.974 32 H 0.263 0.737 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.051 0.949 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -6.472 -13.927 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.080 4.080 3 H 0.092 0.908 4 C -0.178 4.178 5 C 0.295 3.705 6 O -0.415 6.415 7 N -0.324 5.324 8 C 0.095 3.905 9 C -0.554 4.554 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.539 5.539 13 Si 0.700 3.300 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.192 1.192 17 C 0.023 3.977 18 C -0.173 4.173 19 C -0.198 4.198 20 C -0.229 4.229 21 C -0.066 4.066 22 C -0.202 4.202 23 C -0.199 4.199 24 C -0.201 4.201 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.053 0.947 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.369 -5.871 -13.819 18.247 hybrid contribution 0.253 0.519 0.769 0.962 sum 10.622 -5.352 -13.050 17.657 Atomic orbital electron populations 1.22052 0.94780 1.01441 1.03039 1.20861 0.96555 0.99090 0.91476 0.90759 1.21906 1.01994 1.00533 0.93409 1.20454 0.79732 0.85870 0.84407 1.90625 1.39530 1.25157 1.86202 1.47921 1.54289 1.23211 1.07013 1.19650 0.96333 0.92491 0.82014 1.21294 1.01677 1.21210 1.11214 0.90620 1.24834 0.94733 0.96473 0.97011 1.69892 1.16148 1.42859 1.24987 0.86911 0.80535 0.83331 0.79235 1.20057 1.21228 1.19224 1.21001 0.92242 0.83007 1.01460 1.22710 1.01098 0.91041 1.02425 1.22858 1.02504 1.03336 0.91064 1.22969 1.00042 0.96456 1.03428 1.20575 0.95150 0.95617 0.95250 1.21979 1.01471 0.95416 1.01381 1.21903 1.01406 1.00015 0.96533 1.21948 0.95028 1.01680 1.01468 0.93311 0.90161 0.93210 0.89658 0.89189 0.94744 0.95639 0.92753 0.91202 0.90818 0.87736 0.89013 0.88984 0.89374 0.89306 0.92235 0.93229 0.92348 0.92821 0.93146 0.92234 0.92382 0.93024 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 8.23 37.16 0.31 -2.06 16 2 C -0.06 -0.84 1.40 -90.62 -0.13 -0.96 16 3 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 4 C -0.14 -1.99 3.01 -27.89 -0.08 -2.08 16 5 C 0.51 10.08 7.39 -10.98 -0.08 10.00 16 6 O -0.54 -12.83 13.54 5.55 0.08 -12.75 16 7 N -0.59 -11.99 2.46 -175.06 -0.43 -12.42 16 8 C 0.22 5.26 4.27 -5.19 -0.02 5.23 16 9 C -0.52 -14.59 9.94 -34.44 -0.34 -14.93 16 10 H 0.08 2.35 8.06 -52.49 -0.42 1.92 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 12 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 13 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 17 C 0.15 2.31 5.54 -4.04 -0.02 2.29 16 18 C -0.15 -2.43 5.94 -90.62 -0.54 -2.97 16 19 C -0.16 -2.50 10.18 -26.74 -0.27 -2.77 16 20 C -0.19 -2.39 10.25 -26.73 -0.27 -2.67 16 21 C -0.07 -0.70 0.57 -154.51 -0.09 -0.79 16 22 C -0.15 -1.46 7.77 37.16 0.29 -1.17 16 23 C -0.14 -1.41 8.12 37.16 0.30 -1.11 16 24 C -0.14 -1.38 8.13 37.16 0.30 -1.08 16 25 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 26 H 0.08 1.54 5.95 -51.93 -0.31 1.23 16 27 H 0.05 0.67 6.43 -51.93 -0.33 0.34 16 28 H 0.09 1.04 5.44 -51.93 -0.28 0.76 16 29 H 0.09 1.23 6.60 -51.93 -0.34 0.89 16 30 H 0.03 0.90 6.86 -51.93 -0.36 0.55 16 31 H 0.03 0.60 6.93 -51.93 -0.36 0.24 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.07 1.12 7.63 -51.93 -0.40 0.73 16 35 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 36 H 0.09 1.39 8.03 -51.93 -0.42 0.98 16 37 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.58 6.54 -51.93 -0.34 0.24 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 46 H 0.06 0.54 6.32 -51.93 -0.33 0.21 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 364.44 15.07 5.49 5.49 Total: -1.00 -32.11 364.44 -8.12 -40.23 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.61 Total: 2.43 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -0.75 Total: -13.09 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.34 Total: -39.38 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.11 -8.12 -40.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108812707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.102 kcal (2) G-P(sol) polarization free energy of solvation -32.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds