Wall clock time and date at job start Tue Mar 31 2020 05:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47288 * 2 1 4 4 C 1.52995 * 109.47687 * 120.00684 * 2 1 3 5 5 C 1.53006 * 109.46839 * 294.99946 * 4 2 1 6 6 C 1.53000 * 109.47069 * 175.00056 * 5 4 2 7 7 C 1.52996 * 109.47076 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47107 * 299.99487 * 7 6 5 9 9 C 1.53006 * 109.47037 * 60.00260 * 8 7 6 10 10 C 1.52997 * 109.46717 * 300.00131 * 9 8 7 11 11 C 1.50702 * 109.46729 * 240.00466 * 2 1 3 12 12 O 1.21277 * 120.00150 * 250.00536 * 11 2 1 13 13 N 1.34781 * 120.00074 * 70.00729 * 11 2 1 14 14 C 1.46498 * 120.00262 * 183.94650 * 13 11 2 15 15 C 1.46507 * 119.99922 * 3.94210 * 13 11 2 16 16 H 1.09000 * 109.46604 * 354.25493 * 15 13 11 17 17 C 1.53001 * 109.47017 * 114.25564 * 15 13 11 18 18 C 1.50697 * 109.46940 * 234.25542 * 15 13 11 19 19 H 1.07995 * 120.00379 * 0.02562 * 18 15 13 20 20 C 1.37881 * 119.99651 * 179.97438 * 18 15 13 21 21 N 1.31502 * 120.00319 * 0.02562 * 20 18 15 22 22 Si 1.86810 * 119.99629 * 179.97438 * 20 18 15 23 23 H 1.48496 * 109.47016 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46727 * 120.00040 * 22 20 18 25 25 H 1.48496 * 109.46733 * 239.99771 * 22 20 18 26 26 H 1.09002 * 109.47095 * 185.95641 * 1 2 3 27 27 H 1.09008 * 109.46931 * 305.94907 * 1 2 3 28 28 H 1.09000 * 109.47505 * 65.94895 * 1 2 3 29 29 H 1.08998 * 109.47437 * 174.99890 * 4 2 1 30 30 H 1.09002 * 109.46916 * 54.99419 * 4 2 1 31 31 H 1.08992 * 109.47088 * 54.99948 * 5 4 2 32 32 H 1.08997 * 109.46995 * 59.99582 * 6 5 4 33 33 H 1.08999 * 109.47002 * 299.99724 * 6 5 4 34 34 H 1.09003 * 109.47271 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47502 * 59.99952 * 7 6 5 36 36 H 1.08996 * 109.47048 * 179.97438 * 8 7 6 37 37 H 1.08997 * 109.47319 * 300.00576 * 8 7 6 38 38 H 1.09005 * 109.47072 * 59.99898 * 9 8 7 39 39 H 1.08999 * 109.47306 * 179.97438 * 9 8 7 40 40 H 1.08997 * 109.47378 * 299.99524 * 10 9 8 41 41 H 1.09003 * 109.47028 * 179.97438 * 10 9 8 42 42 H 1.08997 * 109.47292 * 85.50169 * 14 13 11 43 43 H 1.08995 * 109.47131 * 205.51104 * 14 13 11 44 44 H 1.09005 * 109.46640 * 325.50410 * 14 13 11 45 45 H 1.08997 * 109.46908 * 299.99895 * 17 15 13 46 46 H 1.08998 * 109.47167 * 59.99781 * 17 15 13 47 47 H 1.08999 * 109.46415 * 180.02562 * 17 15 13 48 48 H 0.97004 * 120.00554 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6354 0.0687 2.4953 6 6 2.0357 -0.7138 3.7476 7 6 1.6315 0.0765 4.9937 8 6 2.3417 1.4317 4.9906 9 6 1.9415 2.2144 3.7383 10 6 2.3455 1.4239 2.4922 11 6 2.0323 -0.7103 -1.2306 12 8 2.5729 -1.7911 -1.1287 13 7 1.8806 -0.1445 -2.4444 14 6 2.2901 -0.8721 -3.6482 15 6 1.3061 1.1983 -2.5601 16 1 0.9709 1.5357 -1.5793 17 6 2.3664 2.1622 -3.0962 18 6 0.1342 1.1634 -3.5069 19 1 -0.1541 0.2340 -3.9753 20 6 -0.5705 2.3179 -3.7743 21 7 -0.2198 3.4495 -3.2036 22 14 -2.0228 2.2748 -4.9486 23 1 -2.2099 0.8909 -5.4537 24 1 -3.2496 2.7108 -4.2346 25 1 -1.7633 3.1882 -6.0903 26 1 -0.3633 -1.0221 0.1066 27 1 -0.3633 0.6034 0.8320 28 1 -0.3634 0.4188 -0.9384 29 1 3.1264 -0.7996 1.2054 30 1 1.6055 -1.7199 1.2949 31 1 0.5565 0.2234 2.4929 32 1 3.1146 -0.8686 3.7499 33 1 1.5301 -1.6795 3.7496 34 1 1.9163 -0.4812 5.8859 35 1 0.5527 0.2316 4.9916 36 1 2.0534 1.9949 5.8782 37 1 3.4205 1.2766 4.9928 38 1 0.8625 2.3695 3.7362 39 1 2.4470 3.1800 3.7363 40 1 3.4244 1.2688 2.4943 41 1 2.0600 1.9813 1.6000 42 1 1.4779 -1.5220 -3.9739 43 1 2.5263 -0.1611 -4.4398 44 1 3.1709 -1.4748 -3.4263 45 1 3.2140 2.1874 -2.4113 46 1 2.7017 1.8247 -4.0769 47 1 1.9391 3.1612 -3.1818 48 1 -0.7158 4.2617 -3.3915 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114329193.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:56 Heat of formation + Delta-G solvation = -78.963112 kcal Electronic energy + Delta-G solvation = -23741.839834 eV Core-core repulsion = 20602.007532 eV Total energy + Delta-G solvation = -3139.832302 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63925 -38.41224 -35.54448 -34.44018 -32.62757 -30.82933 -30.44824 -29.14971 -26.41380 -25.96456 -25.28383 -23.07683 -22.44937 -21.33960 -20.34988 -19.42623 -17.89452 -16.61854 -16.28696 -15.28295 -15.11911 -14.83607 -14.45839 -14.20099 -14.05430 -13.89073 -13.23129 -13.09482 -12.85730 -12.66204 -12.21456 -12.11048 -11.79168 -11.69947 -11.58564 -11.44893 -11.30454 -11.10121 -11.05658 -10.97588 -10.84383 -10.74322 -10.53569 -10.49231 -10.26416 -10.19736 -10.09315 -9.89569 -9.73509 -9.29498 -8.79708 -8.54048 -7.57449 -6.18791 -4.26622 3.19862 3.29053 3.32636 3.47479 4.04033 4.31923 4.73650 4.77738 4.82801 5.12333 5.20304 5.22592 5.31552 5.43307 5.55397 5.58757 5.61883 5.64643 5.70737 5.74352 5.91335 6.00192 6.05487 6.10529 6.18850 6.20543 6.21624 6.28380 6.29491 6.37446 6.40255 6.42316 6.46689 6.51109 6.60981 6.64740 6.73379 6.77298 6.86641 7.02975 7.21387 7.44420 7.67738 7.85554 8.12285 8.51902 8.77383 9.08589 9.42054 10.85959 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.018760 B = 0.004744 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.152836 B = 5901.336671 C = 6619.769609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.091 4.091 5 C -0.088 4.088 6 C -0.113 4.113 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.511 3.489 12 O -0.579 6.579 13 N -0.593 5.593 14 C 0.099 3.901 15 C 0.249 3.751 16 H 0.061 0.939 17 C -0.152 4.152 18 C -0.526 4.526 19 H 0.062 0.938 20 C 0.067 3.933 21 N -0.887 5.887 22 Si 0.895 3.105 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.283 1.283 26 H 0.049 0.951 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.011 0.989 46 H 0.031 0.969 47 H 0.094 0.906 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.115 -2.238 11.756 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.126 4.126 3 H 0.112 0.888 4 C -0.129 4.129 5 C -0.106 4.106 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.157 4.157 10 C -0.156 4.156 11 C 0.299 3.701 12 O -0.460 6.460 13 N -0.322 5.322 14 C -0.044 4.044 15 C 0.148 3.852 16 H 0.079 0.921 17 C -0.211 4.211 18 C -0.565 4.565 19 H 0.080 0.920 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.209 1.209 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.107 0.893 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.051 0.949 47 H 0.113 0.887 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.334 -2.578 11.775 12.507 hybrid contribution -0.837 0.206 -0.831 1.197 sum 2.498 -2.372 10.944 11.474 Atomic orbital electron populations 1.21918 0.92842 1.01667 1.04205 1.21238 0.97933 1.00696 0.92730 0.88832 1.21417 1.00980 0.98581 0.91911 1.21224 1.00567 0.94818 0.94025 1.21568 1.01139 0.98278 0.94087 1.21528 1.00353 0.96034 0.97705 1.21535 1.00253 0.96103 0.97739 1.21532 1.01242 0.98247 0.94656 1.21659 1.00173 0.95832 0.97895 1.20611 0.78709 0.85569 0.85167 1.90566 1.45681 1.22729 1.87074 1.48256 1.60094 1.19031 1.04859 1.21308 0.98797 0.96335 0.88008 1.19180 0.91161 0.76179 0.98651 0.92117 1.22150 0.96881 1.03926 0.98128 1.21356 1.12773 0.95146 1.27184 0.91982 1.24869 0.97443 0.95237 0.95971 1.69859 1.40165 0.99385 1.43135 0.86473 0.82240 0.78209 0.80753 1.19743 1.20877 1.20918 0.93176 0.92270 0.89334 0.91956 0.91611 0.90811 0.92173 0.92175 0.92517 0.92133 0.92561 0.92249 0.92043 0.92277 0.92210 0.91274 0.93887 0.91242 0.92757 0.96979 0.94948 0.88737 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.35 37.16 0.31 -2.28 16 2 C -0.10 -1.86 1.72 -91.77 -0.16 -2.01 16 3 H 0.09 1.67 5.36 -51.93 -0.28 1.39 16 4 C -0.09 -1.40 3.45 -26.73 -0.09 -1.49 16 5 C -0.09 -1.12 2.06 -90.62 -0.19 -1.30 16 6 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 7 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 8 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 9 C -0.12 -1.30 5.92 -26.73 -0.16 -1.45 16 10 C -0.12 -1.47 4.96 -26.73 -0.13 -1.60 16 11 C 0.51 10.79 6.94 -10.98 -0.08 10.71 16 12 O -0.58 -13.36 15.66 5.56 0.09 -13.27 16 13 N -0.59 -12.81 2.75 -175.26 -0.48 -13.29 16 14 C 0.10 1.97 9.36 59.85 0.56 2.53 16 15 C 0.25 5.72 1.67 -69.08 -0.12 5.60 16 16 H 0.06 1.43 4.53 -51.93 -0.24 1.20 16 17 C -0.15 -3.43 9.04 37.16 0.34 -3.09 16 18 C -0.53 -13.18 7.90 -34.44 -0.27 -13.45 16 19 H 0.06 1.60 7.44 -52.49 -0.39 1.21 16 20 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -23.01 11.32 55.43 0.63 -22.38 16 22 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 0.90 6.75 -51.92 -0.35 0.55 16 28 H 0.09 1.80 5.79 -51.93 -0.30 1.50 16 29 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 30 H 0.07 1.06 8.12 -51.93 -0.42 0.63 16 31 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.95 6.46 -51.93 -0.34 0.61 16 42 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.33 6.76 -51.93 -0.35 0.98 16 44 H 0.05 1.04 7.51 -51.93 -0.39 0.65 16 45 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 46 H 0.03 0.70 6.93 -51.93 -0.36 0.34 16 47 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 48 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 356.65 15.07 5.37 5.37 Total: -1.00 -26.93 356.65 -8.64 -35.58 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -8.69 Total: 3.27 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -0.54 Total: -10.27 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.14 Total: -35.67 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -26.93 -8.64 -35.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114329193.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.387 kcal (2) G-P(sol) polarization free energy of solvation -26.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds