Wall clock time and date at job start Tue Mar 31 2020 05:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 C 1.53000 * 109.46861 * 240.00174 * 2 1 3 5 5 C 1.52997 * 109.47341 * 64.99952 * 4 2 1 6 6 C 1.53006 * 109.47127 * 64.99479 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 C 1.52997 * 109.47232 * 184.99601 * 5 4 2 11 11 C 1.50704 * 109.47074 * 120.00199 * 2 1 3 12 12 O 1.21277 * 119.99650 * 120.00011 * 11 2 1 13 13 N 1.34779 * 119.99915 * 299.99760 * 11 2 1 14 14 C 1.46499 * 120.00013 * 0.02562 * 13 11 2 15 15 C 1.46500 * 119.99783 * 179.97438 * 13 11 2 16 16 H 1.08997 * 109.47204 * 0.02562 * 15 13 11 17 17 C 1.53005 * 109.46731 * 120.00133 * 15 13 11 18 18 C 1.50691 * 109.47280 * 240.00196 * 15 13 11 19 19 H 1.08004 * 120.00076 * 0.02562 * 18 15 13 20 20 C 1.37878 * 120.00226 * 180.02562 * 18 15 13 21 21 N 1.31516 * 120.00046 * 180.02562 * 20 18 15 22 22 Si 1.86798 * 119.99650 * 359.97438 * 20 18 15 23 23 H 1.48499 * 109.47102 * 90.00458 * 22 20 18 24 24 H 1.48508 * 109.47145 * 210.00004 * 22 20 18 25 25 H 1.48494 * 109.47553 * 330.00103 * 22 20 18 26 26 H 1.09009 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46985 * 299.99426 * 1 2 3 28 28 H 1.08995 * 109.47246 * 60.00098 * 1 2 3 29 29 H 1.09004 * 109.47242 * 304.99470 * 4 2 1 30 30 H 1.09002 * 109.46818 * 184.99990 * 4 2 1 31 31 H 1.09001 * 109.46832 * 304.99800 * 5 4 2 32 32 H 1.08998 * 109.46505 * 59.99871 * 6 5 4 33 33 H 1.08996 * 109.46884 * 300.00752 * 6 5 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 36 36 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 38 38 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 39 39 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47045 * 59.99942 * 10 5 4 41 41 H 1.09001 * 109.47375 * 299.99867 * 10 5 4 42 42 H 1.09005 * 109.46871 * 89.99629 * 14 13 11 43 43 H 1.08999 * 109.46759 * 209.99464 * 14 13 11 44 44 H 1.09000 * 109.47136 * 330.00089 * 14 13 11 45 45 H 1.08998 * 109.47129 * 300.00436 * 17 15 13 46 46 H 1.09005 * 109.46905 * 60.00122 * 17 15 13 47 47 H 1.08997 * 109.46645 * 179.97438 * 17 15 13 48 48 H 0.97002 * 119.99628 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0689 -2.4953 6 6 2.3448 1.4245 -2.4924 7 6 1.9405 2.2144 -3.7388 8 6 2.3411 1.4316 -4.9909 9 6 1.6315 0.0762 -4.9938 10 6 2.0354 -0.7135 -3.7477 11 6 2.0324 -0.7105 1.2305 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2500 2.4546 14 6 0.8641 0.9408 2.5890 15 6 2.1947 -0.9410 3.6507 16 1 2.8002 -1.7973 3.3540 17 6 3.0450 0.0203 4.4838 18 6 1.0223 -1.4142 4.4708 19 1 0.0145 -1.2201 4.1344 20 6 1.2362 -2.0951 5.6505 21 7 0.2130 -2.5085 6.3659 22 14 2.9792 -2.4314 6.2319 23 1 3.4417 -1.3079 7.0858 24 1 3.0048 -3.6922 7.0162 25 1 3.8768 -2.5616 5.0561 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2056 31 1 0.5562 0.2236 -2.4928 32 1 3.4237 1.2697 -2.4949 33 1 2.0598 1.9819 -1.6002 34 1 2.4464 3.1800 -3.7370 35 1 0.8615 2.3691 -3.7367 36 1 2.0535 1.9947 -5.8788 37 1 3.4201 1.2769 -4.9930 38 1 0.5526 0.2308 -4.9917 39 1 1.9166 -0.4813 -5.8860 40 1 1.5298 -1.6792 -3.7498 41 1 3.1143 -0.8682 -3.7502 42 1 -0.1838 0.6425 2.6225 43 1 1.1219 1.4663 3.5086 44 1 1.0273 1.5995 1.7361 45 1 3.8929 0.3626 3.8906 46 1 2.4397 0.8769 4.7805 47 1 3.4076 -0.4937 5.3739 48 1 0.3635 -2.9878 7.1957 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114329198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:02 Heat of formation + Delta-G solvation = -64.118418 kcal Electronic energy + Delta-G solvation = -23386.499423 eV Core-core repulsion = 20247.310836 eV Total energy + Delta-G solvation = -3139.188587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.83281 -38.60167 -35.59836 -34.69747 -32.73990 -31.16785 -30.83184 -29.69354 -26.60176 -25.91760 -25.13274 -23.80405 -22.72797 -21.48686 -20.13106 -19.52625 -18.17832 -17.03181 -16.19197 -15.78760 -15.36677 -14.98150 -14.53940 -14.43045 -14.16665 -14.09610 -13.58150 -13.23773 -12.98708 -12.81571 -12.33333 -12.27732 -12.21374 -12.14070 -11.96919 -11.79532 -11.59104 -11.54401 -11.24138 -11.12498 -11.04349 -10.88563 -10.70670 -10.54512 -10.36335 -10.13356 -10.08236 -9.95484 -9.63104 -9.30579 -8.85574 -8.62365 -7.67352 -6.13504 -4.13694 3.23865 3.34995 3.37578 3.40749 3.85555 4.36343 4.54435 4.57991 4.63994 4.97307 4.98933 5.06296 5.19542 5.20365 5.31491 5.34690 5.40282 5.42742 5.47330 5.52839 5.54117 5.75280 5.77972 5.87655 5.90814 5.97595 5.97945 6.01471 6.03372 6.06118 6.14024 6.19439 6.21378 6.26110 6.26695 6.30572 6.38306 6.50794 6.51389 6.58280 6.86150 7.15796 7.39280 7.65728 8.23705 8.51013 8.87079 8.98335 9.48085 10.99351 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.035273 B = 0.003623 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.615583 B = 7726.324711 C = 7793.019450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.109 4.109 3 H 0.091 0.909 4 C -0.093 4.093 5 C -0.088 4.088 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.115 4.115 11 C 0.509 3.491 12 O -0.555 6.555 13 N -0.588 5.588 14 C 0.086 3.914 15 C 0.228 3.772 16 H 0.062 0.938 17 C -0.161 4.161 18 C -0.526 4.526 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.896 5.896 22 Si 0.883 3.117 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.263 1.263 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.055 0.945 47 H 0.050 0.950 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 10.558 -19.158 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.130 4.130 3 H 0.109 0.891 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.152 4.152 11 C 0.296 3.704 12 O -0.434 6.434 13 N -0.318 5.318 14 C -0.057 4.057 15 C 0.126 3.874 16 H 0.079 0.921 17 C -0.219 4.219 18 C -0.564 4.564 19 H 0.096 0.904 20 C -0.128 4.128 21 N -0.534 5.534 22 Si 0.713 3.287 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.188 1.188 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.384 9.942 -19.020 21.593 hybrid contribution 0.745 -0.134 0.637 0.990 sum 3.130 9.807 -18.383 21.069 Atomic orbital electron populations 1.22070 0.93422 1.03073 1.02789 1.21302 0.97486 1.00490 0.93717 0.89120 1.21412 1.01596 0.98711 0.91385 1.21237 1.00367 0.94761 0.94252 1.21657 1.00455 0.95809 0.97532 1.21534 1.01089 0.98229 0.94808 1.21536 1.00389 0.96141 0.97641 1.21519 1.00292 0.95984 0.97842 1.21566 1.01357 0.98391 0.93904 1.20518 0.80538 0.84740 0.84612 1.90625 1.39407 1.26833 1.86538 1.47840 1.49459 1.28252 1.06278 1.21725 0.95137 0.87344 1.01501 1.19264 0.94881 0.91399 0.81829 0.92067 1.22460 0.98883 1.00863 0.99715 1.21170 0.93222 1.36489 1.05504 0.90400 1.24872 0.96889 0.94817 0.96222 1.69879 1.30195 1.38450 1.14856 0.86914 0.85595 0.76958 0.79204 1.20435 1.22165 1.18827 0.92198 0.90867 0.91998 0.91361 0.91360 0.90889 0.92038 0.91764 0.92335 0.92119 0.92478 0.92160 0.92145 0.92355 0.91980 0.92027 0.92550 0.91118 0.92511 0.94861 0.92568 0.93205 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 8.59 37.16 0.32 -1.69 16 2 C -0.11 -1.55 1.79 -91.77 -0.16 -1.72 16 3 H 0.09 1.13 5.60 -51.93 -0.29 0.84 16 4 C -0.09 -1.25 3.50 -26.73 -0.09 -1.34 16 5 C -0.09 -0.90 2.06 -90.62 -0.19 -1.08 16 6 C -0.12 -1.10 4.97 -26.73 -0.13 -1.23 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.12 16 8 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 9 C -0.12 -0.97 5.92 -26.76 -0.16 -1.13 16 10 C -0.11 -1.10 5.20 -26.76 -0.14 -1.24 16 11 C 0.51 10.17 7.08 -10.98 -0.08 10.09 16 12 O -0.56 -13.30 15.25 5.56 0.08 -13.21 16 13 N -0.59 -12.12 2.75 -175.26 -0.48 -12.60 16 14 C 0.09 1.40 8.04 59.85 0.48 1.89 16 15 C 0.23 5.58 2.23 -69.08 -0.15 5.43 16 16 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 17 C -0.16 -3.51 8.65 37.16 0.32 -3.19 16 18 C -0.53 -14.68 8.95 -34.44 -0.31 -14.99 16 19 H 0.08 2.33 7.89 -52.48 -0.41 1.92 16 20 C 0.07 2.15 5.45 -17.82 -0.10 2.05 16 21 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 22 Si 0.88 22.12 24.37 -169.99 -4.14 17.98 16 23 H -0.28 -6.63 6.87 56.52 0.39 -6.24 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 26 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.07 0.94 4.53 -51.93 -0.24 0.70 16 28 H 0.06 0.64 6.46 -51.93 -0.34 0.30 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.00 7.95 -51.93 -0.41 0.59 16 31 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.60 6.46 -51.93 -0.34 0.26 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.92 6.95 -51.93 -0.36 0.56 16 43 H 0.07 1.15 6.43 -51.93 -0.33 0.81 16 44 H 0.06 0.71 6.01 -51.93 -0.31 0.40 16 45 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 1.13 6.66 -51.93 -0.35 0.78 16 47 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 347.63 15.07 5.24 5.24 Total: -1.00 -31.98 347.63 -7.67 -39.66 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.44 Total: -0.28 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: -0.71 Total: -10.37 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.29 Total: -39.01 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.98 -7.67 -39.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114329198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.460 kcal (2) G-P(sol) polarization free energy of solvation -31.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds