Wall clock time and date at job start Tue Mar 31 2020 05:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47091 * 2 1 4 4 C 1.53000 * 109.46861 * 240.00174 * 2 1 3 5 5 C 1.52997 * 109.47341 * 64.99952 * 4 2 1 6 6 C 1.53006 * 109.47127 * 64.99479 * 5 4 2 7 7 C 1.52997 * 109.47127 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47060 * 300.00449 * 7 6 5 9 9 C 1.52996 * 109.47328 * 60.00126 * 8 7 6 10 10 C 1.52997 * 109.47232 * 184.99601 * 5 4 2 11 11 C 1.50704 * 109.47074 * 120.00199 * 2 1 3 12 12 O 1.21277 * 119.99650 * 120.00011 * 11 2 1 13 13 N 1.34779 * 119.99915 * 299.99760 * 11 2 1 14 14 C 1.46499 * 120.00013 * 0.02562 * 13 11 2 15 15 C 1.46500 * 119.99783 * 179.97438 * 13 11 2 16 16 H 1.08997 * 109.47204 * 0.02562 * 15 13 11 17 17 C 1.52997 * 109.47232 * 240.00122 * 15 13 11 18 18 C 1.50706 * 109.46866 * 120.00204 * 15 13 11 19 19 H 1.08000 * 119.99749 * 0.02562 * 18 15 13 20 20 C 1.37874 * 119.99913 * 179.97438 * 18 15 13 21 21 N 1.31516 * 120.00151 * 0.02562 * 20 18 15 22 22 Si 1.86797 * 120.00087 * 179.97438 * 20 18 15 23 23 H 1.48497 * 109.46863 * 90.00072 * 22 20 18 24 24 H 1.48496 * 109.47397 * 210.00288 * 22 20 18 25 25 H 1.48509 * 109.47245 * 330.00480 * 22 20 18 26 26 H 1.09009 * 109.46653 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46985 * 299.99426 * 1 2 3 28 28 H 1.08995 * 109.47246 * 60.00098 * 1 2 3 29 29 H 1.09004 * 109.47242 * 304.99470 * 4 2 1 30 30 H 1.09002 * 109.46818 * 184.99990 * 4 2 1 31 31 H 1.09001 * 109.46832 * 304.99800 * 5 4 2 32 32 H 1.08998 * 109.46505 * 59.99871 * 6 5 4 33 33 H 1.08996 * 109.46884 * 300.00752 * 6 5 4 34 34 H 1.09002 * 109.47153 * 180.02562 * 7 6 5 35 35 H 1.09001 * 109.46832 * 60.00321 * 7 6 5 36 36 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.47194 * 299.99650 * 8 7 6 38 38 H 1.08992 * 109.47554 * 59.99639 * 9 8 7 39 39 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 40 40 H 1.09002 * 109.47045 * 59.99942 * 10 5 4 41 41 H 1.09001 * 109.47375 * 299.99867 * 10 5 4 42 42 H 1.09005 * 109.46871 * 89.99629 * 14 13 11 43 43 H 1.08999 * 109.46759 * 209.99464 * 14 13 11 44 44 H 1.09000 * 109.47136 * 330.00089 * 14 13 11 45 45 H 1.09005 * 109.47071 * 60.00181 * 17 15 13 46 46 H 1.08997 * 109.47413 * 180.02562 * 17 15 13 47 47 H 1.08997 * 109.47143 * 300.00181 * 17 15 13 48 48 H 0.96996 * 120.00091 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6352 0.0689 -2.4953 6 6 2.3448 1.4245 -2.4924 7 6 1.9405 2.2144 -3.7388 8 6 2.3411 1.4316 -4.9909 9 6 1.6315 0.0762 -4.9938 10 6 2.0354 -0.7135 -3.7477 11 6 2.0324 -0.7105 1.2305 12 8 2.7296 -1.6965 1.1191 13 7 1.7068 -0.2500 2.4546 14 6 0.8641 0.9408 2.5890 15 6 2.1947 -0.9410 3.6507 16 1 2.8002 -1.7973 3.3540 17 6 1.0044 -1.4215 4.4833 18 6 3.0322 0.0058 4.4713 19 1 3.1853 1.0208 4.1356 20 6 3.6020 -0.4235 5.6511 21 7 3.4151 -1.6593 6.0602 22 14 4.6407 0.7498 6.6678 23 1 3.7730 1.4662 7.6368 24 1 5.6769 -0.0176 7.4044 25 1 5.2980 1.7338 5.7704 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.6054 -1.7198 -1.2952 30 1 3.1263 -0.7994 -1.2056 31 1 0.5562 0.2236 -2.4928 32 1 3.4237 1.2697 -2.4949 33 1 2.0598 1.9819 -1.6002 34 1 2.4464 3.1800 -3.7370 35 1 0.8615 2.3691 -3.7367 36 1 2.0535 1.9947 -5.8788 37 1 3.4201 1.2769 -4.9930 38 1 0.5526 0.2308 -4.9917 39 1 1.9166 -0.4813 -5.8860 40 1 1.5298 -1.6792 -3.7498 41 1 3.1143 -0.8682 -3.7502 42 1 -0.1838 0.6425 2.6225 43 1 1.1219 1.4663 3.5086 44 1 1.0273 1.5995 1.7361 45 1 0.3986 -2.1063 3.8898 46 1 1.3673 -1.9352 5.3735 47 1 0.3992 -0.5649 4.7800 48 1 3.8163 -1.9614 6.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114329201.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:04 Heat of formation + Delta-G solvation = -73.577786 kcal Electronic energy + Delta-G solvation = -23329.172086 eV Core-core repulsion = 20189.573309 eV Total energy + Delta-G solvation = -3139.598776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.71587 -38.50114 -35.37725 -34.61561 -32.80247 -30.98947 -30.67278 -28.98575 -26.50276 -25.81377 -25.19528 -23.68085 -22.67420 -21.37086 -20.10248 -19.50759 -18.06539 -16.60129 -16.24850 -15.58941 -15.20242 -14.85276 -14.56458 -14.26917 -14.12490 -14.01796 -13.51470 -13.14048 -12.91139 -12.50338 -12.28654 -12.20363 -12.08292 -11.84897 -11.77003 -11.55413 -11.41032 -11.19590 -11.08240 -10.94266 -10.91625 -10.75392 -10.65507 -10.55127 -10.31815 -10.23066 -10.14761 -10.04206 -9.89987 -9.14136 -8.73784 -8.39568 -7.51480 -6.05081 -4.13029 3.27051 3.34176 3.36892 3.50253 4.02008 4.41304 4.59557 4.62351 4.68575 5.02535 5.05186 5.12353 5.24405 5.26053 5.35600 5.38225 5.44245 5.47673 5.51148 5.56621 5.61552 5.77835 5.86269 5.90895 5.93902 5.98246 6.03911 6.04449 6.08502 6.11694 6.18319 6.23211 6.25136 6.33201 6.44402 6.54525 6.62393 6.78970 6.87371 7.10759 7.48815 7.58414 7.75284 8.05648 8.23902 8.60996 8.86843 9.15314 9.53664 11.00183 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.003653 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.621731 B = 7662.869739 C = 7928.379176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.093 4.093 5 C -0.087 4.087 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.115 4.115 11 C 0.506 3.494 12 O -0.555 6.555 13 N -0.593 5.593 14 C 0.084 3.916 15 C 0.257 3.743 16 H 0.062 0.938 17 C -0.145 4.145 18 C -0.525 4.525 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.275 1.275 26 H 0.056 0.944 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.010 0.990 46 H 0.092 0.908 47 H 0.028 0.972 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.793 6.967 -17.756 20.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.132 4.132 3 H 0.109 0.891 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.152 4.152 11 C 0.293 3.707 12 O -0.434 6.434 13 N -0.324 5.324 14 C -0.060 4.060 15 C 0.157 3.843 16 H 0.080 0.920 17 C -0.204 4.204 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.029 0.971 46 H 0.111 0.889 47 H 0.048 0.952 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.370 6.317 -17.622 19.774 hybrid contribution 0.519 0.728 0.728 1.153 sum -5.851 7.045 -16.894 19.217 Atomic orbital electron populations 1.22060 0.93814 1.02625 1.02698 1.21317 0.97111 1.00756 0.94056 0.89113 1.21402 1.01777 0.98491 0.91383 1.21232 1.00214 0.94825 0.94284 1.21660 1.00575 0.95775 0.97510 1.21533 1.01003 0.98272 0.94822 1.21538 1.00443 0.96114 0.97628 1.21516 1.00219 0.96015 0.97840 1.21568 1.01427 0.98318 0.93916 1.20463 0.80675 0.84892 0.84668 1.90627 1.39003 1.27239 1.86544 1.48197 1.49326 1.27892 1.06980 1.21712 0.93672 0.88194 1.02420 1.18905 0.92132 0.93424 0.79860 0.92010 1.22074 0.97413 0.98805 1.02103 1.21336 1.31031 0.98080 1.05914 0.92305 1.24898 0.96262 0.95263 0.97407 1.69883 1.44389 1.15706 1.22648 0.86503 0.80069 0.80753 0.80110 1.20636 1.21108 1.19946 0.92513 0.91056 0.92051 0.91543 0.91245 0.91030 0.91946 0.91725 0.92319 0.92193 0.92506 0.92116 0.92212 0.92380 0.92051 0.91967 0.93728 0.90432 0.92663 0.97099 0.88925 0.95247 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.59 37.16 0.32 -1.62 16 2 C -0.11 -1.67 1.79 -91.77 -0.16 -1.83 16 3 H 0.09 1.26 5.60 -51.93 -0.29 0.97 16 4 C -0.09 -1.30 3.50 -26.73 -0.09 -1.39 16 5 C -0.09 -0.94 2.06 -90.62 -0.19 -1.12 16 6 C -0.12 -1.21 4.97 -26.73 -0.13 -1.34 16 7 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 8 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 9 C -0.12 -1.01 5.92 -26.76 -0.16 -1.16 16 10 C -0.11 -1.14 5.20 -26.76 -0.14 -1.28 16 11 C 0.51 10.62 7.08 -10.98 -0.08 10.54 16 12 O -0.56 -13.98 15.25 5.56 0.08 -13.89 16 13 N -0.59 -12.80 2.75 -175.26 -0.48 -13.28 16 14 C 0.08 1.42 7.80 59.85 0.47 1.88 16 15 C 0.26 6.68 2.64 -69.08 -0.18 6.50 16 16 H 0.06 1.87 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 18 C -0.52 -14.35 7.99 -34.44 -0.28 -14.63 16 19 H 0.06 1.58 7.33 -52.49 -0.38 1.19 16 20 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 21 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.06 0.76 8.14 -51.92 -0.42 0.33 16 27 H 0.07 0.87 4.53 -51.93 -0.24 0.64 16 28 H 0.06 0.62 6.46 -51.93 -0.34 0.29 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.07 1.10 7.95 -51.93 -0.41 0.69 16 31 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.67 6.46 -51.93 -0.34 0.33 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.04 0.67 6.95 -51.93 -0.36 0.31 16 43 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 44 H 0.05 0.77 6.01 -51.93 -0.31 0.45 16 45 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 47 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 48 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 355.13 15.07 5.35 5.35 Total: -1.00 -30.69 355.13 -8.78 -39.48 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -8.64 Total: 0.32 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.70 Total: -9.34 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.14 Total: -38.09 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.08 Total: -13.89 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.69 -8.78 -39.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114329201.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.101 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds