Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.46630 * 2 1 4 4 C 1.46500 * 120.00117 * 264.70724 * 3 2 1 5 5 C 1.50701 * 109.47228 * 276.36414 * 4 3 2 6 6 H 1.07996 * 120.00038 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99737 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00467 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99954 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46895 * 89.99859 * 9 7 5 11 11 H 1.48500 * 109.47277 * 209.99908 * 9 7 5 12 12 H 1.48504 * 109.46778 * 329.99978 * 9 7 5 13 13 C 1.34778 * 120.00235 * 84.71471 * 3 2 1 14 14 O 1.21285 * 119.99814 * 4.88631 * 13 3 2 15 15 C 1.50706 * 120.00057 * 184.88727 * 13 3 2 16 16 H 1.08994 * 109.47177 * 305.46636 * 15 13 3 17 17 C 1.52996 * 109.46682 * 65.47073 * 15 13 3 18 18 C 1.52999 * 109.46749 * 185.46768 * 15 13 3 19 19 C 1.53004 * 109.46742 * 175.00229 * 18 15 13 20 20 C 1.52999 * 109.47078 * 294.99825 * 19 18 15 21 21 C 1.52996 * 109.47097 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.46989 * 60.00587 * 21 20 19 23 23 C 1.53008 * 109.46873 * 299.99745 * 22 21 20 24 24 C 1.52996 * 109.47105 * 60.00326 * 23 22 21 25 25 H 1.09001 * 109.47187 * 299.99834 * 1 2 3 26 26 H 1.08999 * 109.47206 * 60.00257 * 1 2 3 27 27 H 1.08999 * 109.46654 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47187 * 240.00166 * 2 1 3 29 29 H 1.08999 * 109.47206 * 119.99743 * 2 1 3 30 30 H 1.09002 * 109.46793 * 36.36404 * 4 3 2 31 31 H 1.09000 * 109.47406 * 156.36115 * 4 3 2 32 32 H 0.96998 * 120.00552 * 179.97438 * 8 7 5 33 33 H 1.08996 * 109.47570 * 70.37735 * 17 15 13 34 34 H 1.09007 * 109.46584 * 190.37834 * 17 15 13 35 35 H 1.09004 * 109.47467 * 310.37383 * 17 15 13 36 36 H 1.08997 * 109.47459 * 55.00442 * 18 15 13 37 37 H 1.09001 * 109.47607 * 294.99930 * 18 15 13 38 38 H 1.08996 * 109.47256 * 54.99999 * 19 18 15 39 39 H 1.09007 * 109.46774 * 60.00129 * 20 19 18 40 40 H 1.08996 * 109.47220 * 300.00196 * 20 19 18 41 41 H 1.08996 * 109.47402 * 300.00276 * 21 20 19 42 42 H 1.09006 * 109.47163 * 179.97438 * 21 20 19 43 43 H 1.08997 * 109.47658 * 59.99222 * 22 21 20 44 44 H 1.09006 * 109.47344 * 179.97438 * 22 21 20 45 45 H 1.09007 * 109.46925 * 180.02562 * 23 22 21 46 46 H 1.08996 * 109.47061 * 300.00031 * 23 22 21 47 47 H 1.08996 * 109.47402 * 59.99913 * 24 23 22 48 48 H 1.08998 * 109.47152 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3727 2.0329 -1.2633 5 6 3.7813 1.6568 -1.6447 6 1 4.3553 0.9985 -1.0093 7 6 4.3373 2.1530 -2.8047 8 7 3.6382 2.9542 -3.5786 9 14 6.0836 1.6874 -3.2771 10 1 6.0601 0.4573 -4.1087 11 1 6.6996 2.7958 -4.0500 12 1 6.8793 1.4390 -2.0481 13 6 2.1415 2.0525 1.1622 14 8 1.9334 1.4863 2.2145 15 6 2.5377 3.5065 1.1543 16 1 3.4674 3.6267 0.5982 17 6 1.4348 4.3319 0.4887 18 6 2.7379 3.9883 2.5926 19 6 3.2600 5.4264 2.5806 20 6 4.6517 5.4585 1.9457 21 6 5.1735 6.8966 1.9331 22 6 5.2554 7.4219 3.3677 23 6 3.8637 7.3899 4.0028 24 6 3.3419 5.9518 4.0153 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6857 1.7082 -2.0448 31 1 2.3045 3.1144 -1.1460 32 1 4.0294 3.3036 -4.3945 33 1 0.5607 4.3620 1.1391 34 1 1.7944 5.3464 0.3161 35 1 1.1637 3.8756 -0.4634 36 1 3.4596 3.3439 3.0946 37 1 1.7868 3.9515 3.1238 38 1 2.5823 6.0543 2.0023 39 1 4.5933 5.0846 0.9234 40 1 5.3294 4.8306 2.5240 41 1 4.4957 7.5241 1.3545 42 1 6.1652 6.9194 1.4811 43 1 5.9332 6.7944 3.9464 44 1 5.6277 8.4464 3.3589 45 1 3.9220 7.7646 5.0248 46 1 3.1858 8.0174 3.4242 47 1 4.0197 5.3243 4.5939 48 1 2.3503 5.9290 4.4673 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114558953.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -81.680982 kcal Electronic energy + Delta-G solvation = -23667.049957 eV Core-core repulsion = 20527.099800 eV Total energy + Delta-G solvation = -3139.950157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.61413 -38.38269 -35.19162 -34.48406 -32.71743 -31.11819 -30.60118 -29.62056 -27.00131 -25.98331 -23.91720 -22.99489 -22.55609 -21.87925 -20.23440 -19.36344 -17.89234 -16.66025 -16.25327 -15.51588 -15.12648 -14.74110 -14.40241 -14.35507 -14.00682 -13.87112 -13.36319 -13.26601 -12.87629 -12.63865 -12.19007 -12.15194 -12.04943 -11.85804 -11.58558 -11.54970 -11.50525 -11.25226 -11.00915 -10.95543 -10.93022 -10.71220 -10.53010 -10.44047 -10.39466 -10.14386 -10.05216 -9.85093 -9.66588 -9.61326 -8.83862 -8.49766 -7.63897 -6.17286 -4.23899 3.22469 3.29819 3.33197 3.51597 4.01445 4.34675 4.78295 4.83111 4.87979 5.15371 5.24853 5.26874 5.33219 5.48561 5.60128 5.62099 5.64562 5.65830 5.71764 5.76192 5.77474 5.87474 5.92217 6.02884 6.04527 6.10537 6.16667 6.22381 6.25587 6.29140 6.31331 6.39391 6.41691 6.45387 6.48661 6.52705 6.60866 6.68048 6.80026 6.81302 6.90326 7.24963 7.61986 7.77923 8.08888 8.44515 8.81775 9.11221 9.43817 10.89176 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012657 B = 0.005985 C = 0.004452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.611287 B = 4677.181263 C = 6287.951133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.115 3.885 3 N -0.595 5.595 4 C 0.224 3.776 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 C 0.519 3.481 14 O -0.578 6.578 15 C -0.108 4.108 16 H 0.107 0.893 17 C -0.147 4.147 18 C -0.090 4.090 19 C -0.087 4.087 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.113 4.113 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.030 0.970 31 H 0.058 0.942 32 H 0.265 0.735 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.441 6.726 9.423 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.008 4.008 3 N -0.325 5.325 4 C 0.105 3.895 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.530 5.530 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 C 0.308 3.692 14 O -0.460 6.460 15 C -0.129 4.129 16 H 0.125 0.875 17 C -0.204 4.204 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.151 4.151 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.541 6.529 9.756 11.840 hybrid contribution 1.047 -0.287 -0.606 1.244 sum -0.494 6.242 9.150 11.087 Atomic orbital electron populations 1.22104 0.97073 1.01108 1.01781 1.21190 0.93163 0.84217 1.02267 1.48228 1.62744 1.13078 1.08480 1.19732 0.95666 0.94639 0.79508 1.21515 0.98871 1.29971 1.07137 0.92233 1.24914 0.97988 0.94810 0.96012 1.69912 1.37111 1.32267 1.13722 0.86557 0.84442 0.78200 0.78675 1.20547 1.21041 1.19787 1.20549 0.76476 0.88955 0.83242 1.90562 1.53387 1.70553 1.31481 1.21251 1.01625 0.91996 0.98041 0.87538 1.21971 0.97275 0.99898 1.01296 1.21402 1.01405 0.94796 0.95159 1.21208 0.96953 0.96538 0.95812 1.21671 0.96127 0.96144 1.01770 1.21529 1.00926 0.96947 0.96247 1.21539 0.97063 1.00377 0.96660 1.21525 0.96809 0.97160 1.00060 1.21570 1.00774 0.95770 0.96946 0.92900 0.92713 0.92554 0.90447 0.91543 0.95148 0.92488 0.92570 0.93208 0.91988 0.90559 0.91765 0.91912 0.90998 0.90915 0.92170 0.92113 0.92281 0.92253 0.92620 0.92571 0.92188 0.92155 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.20 37.16 0.38 -2.29 16 2 C 0.12 2.21 6.13 -4.04 -0.02 2.19 16 3 N -0.60 -12.73 2.47 -175.05 -0.43 -13.16 16 4 C 0.22 5.27 4.42 -5.19 -0.02 5.25 16 5 C -0.54 -13.95 9.37 -34.44 -0.32 -14.28 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.52 16 10 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.52 10.97 6.94 -10.98 -0.08 10.89 16 14 O -0.58 -13.27 15.62 5.55 0.09 -13.19 16 15 C -0.11 -1.96 1.75 -91.77 -0.16 -2.12 16 16 H 0.11 2.09 5.93 -51.93 -0.31 1.78 16 17 C -0.15 -2.42 8.16 37.16 0.30 -2.11 16 18 C -0.09 -1.42 3.45 -26.73 -0.09 -1.51 16 19 C -0.09 -1.15 2.06 -90.61 -0.19 -1.33 16 20 C -0.12 -1.63 4.96 -26.73 -0.13 -1.77 16 21 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 23 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 24 C -0.11 -1.31 5.21 -26.73 -0.14 -1.45 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.08 1.47 8.03 -51.93 -0.42 1.06 16 29 H 0.07 1.29 7.52 -51.93 -0.39 0.90 16 30 H 0.03 0.76 8.12 -51.93 -0.42 0.34 16 31 H 0.06 1.34 4.12 -51.93 -0.21 1.13 16 32 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 33 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 34 H 0.06 0.92 6.99 -51.93 -0.36 0.55 16 35 H 0.08 1.38 5.42 -51.93 -0.28 1.10 16 36 H 0.06 1.09 8.04 -51.93 -0.42 0.68 16 37 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.07 0.94 6.58 -51.93 -0.34 0.60 16 39 H 0.07 1.12 6.46 -51.92 -0.34 0.79 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -27.99 365.34 -9.12 -37.11 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -8.95 Total: 2.98 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -1.05 Total: -11.23 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.30 Total: -36.70 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.19 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.99 -9.12 -37.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114558953.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.573 kcal (2) G-P(sol) polarization free energy of solvation -27.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds