Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46500 * 109.47053 * 2 1 4 4 C 1.46503 * 120.00060 * 94.82045 * 3 2 1 5 5 C 1.50697 * 109.47101 * 85.52750 * 4 3 2 6 6 H 1.08000 * 119.99776 * 0.02562 * 5 4 3 7 7 C 1.37879 * 120.00438 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99505 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00333 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46792 * 59.99876 * 9 7 5 11 11 H 1.48500 * 109.47126 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47155 * 299.99884 * 9 7 5 13 13 C 1.34779 * 120.00330 * 274.82709 * 3 2 1 14 14 O 1.21284 * 119.99855 * 5.70134 * 13 3 2 15 15 C 1.50698 * 120.00313 * 185.70914 * 13 3 2 16 16 H 1.09001 * 109.47288 * 41.85961 * 15 13 3 17 17 C 1.53004 * 109.46940 * 281.86767 * 15 13 3 18 18 C 1.52997 * 109.47316 * 161.86680 * 15 13 3 19 19 C 1.53000 * 109.47107 * 186.02638 * 18 15 13 20 20 C 1.53004 * 109.47124 * 185.74830 * 19 18 15 21 21 C 1.53000 * 109.47124 * 180.02562 * 20 19 18 22 22 C 1.53001 * 109.47217 * 59.99689 * 21 20 19 23 23 C 1.52994 * 109.47330 * 300.00315 * 22 21 20 24 24 C 1.53001 * 109.47597 * 59.99625 * 23 22 21 25 25 H 1.08997 * 109.46449 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47107 * 299.99379 * 1 2 3 27 27 H 1.08995 * 109.47382 * 59.99583 * 1 2 3 28 28 H 1.09003 * 109.47107 * 240.00621 * 2 1 3 29 29 H 1.08992 * 109.47642 * 119.99961 * 2 1 3 30 30 H 1.09002 * 109.47181 * 205.52803 * 4 3 2 31 31 H 1.08997 * 109.47239 * 325.52986 * 4 3 2 32 32 H 0.96996 * 119.99864 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47146 * 64.23607 * 17 15 13 34 34 H 1.09004 * 109.46851 * 184.23458 * 17 15 13 35 35 H 1.09001 * 109.46770 * 304.23489 * 17 15 13 36 36 H 1.09003 * 109.46837 * 306.02114 * 18 15 13 37 37 H 1.08997 * 109.47455 * 66.02626 * 18 15 13 38 38 H 1.08999 * 109.47464 * 305.74849 * 19 18 15 39 39 H 1.09006 * 109.46776 * 299.99963 * 20 19 18 40 40 H 1.08992 * 109.47241 * 60.00007 * 20 19 18 41 41 H 1.08995 * 109.46998 * 300.00045 * 21 20 19 42 42 H 1.08999 * 109.46944 * 179.97438 * 21 20 19 43 43 H 1.08999 * 109.47176 * 179.97438 * 22 21 20 44 44 H 1.09006 * 109.47024 * 59.99828 * 22 21 20 45 45 H 1.08995 * 109.47114 * 299.99783 * 23 22 21 46 46 H 1.09004 * 109.47607 * 179.97438 * 23 22 21 47 47 H 1.08991 * 109.47361 * 179.97438 * 24 23 22 48 48 H 1.09012 * 109.46888 * 59.99894 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3630 2.0363 1.2643 5 6 3.7844 1.6985 1.6339 6 1 4.3722 1.0600 0.9912 7 6 4.3343 2.2044 2.7926 8 7 3.6185 2.9823 3.5751 9 14 6.0959 1.7850 3.2512 10 1 7.0117 2.2590 2.1826 11 1 6.4454 2.4491 4.5326 12 1 6.2312 0.3140 3.4025 13 6 2.1504 2.0494 -1.1630 14 8 1.7686 1.5460 -2.1983 15 6 2.7725 3.4219 -1.1772 16 1 3.6371 3.4358 -0.5135 17 6 1.7467 4.4518 -0.6998 18 6 3.2164 3.7660 -2.6003 19 6 3.9811 5.0911 -2.5897 20 6 4.3004 5.5074 -4.0270 21 6 5.0656 6.8322 -4.0163 22 6 6.3689 6.6620 -3.2331 23 6 6.0497 6.2458 -1.7959 24 6 5.2844 4.9210 -1.8065 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.2634 3.1161 1.1530 31 1 1.6911 1.6884 2.0488 32 1 4.0052 3.3379 4.3904 33 1 1.4867 4.2509 0.3395 34 1 2.1714 5.4523 -0.7812 35 1 0.8511 4.3858 -1.3176 36 1 3.8642 2.9758 -2.9799 37 1 2.3402 3.8574 -3.2422 38 1 3.3700 5.8595 -2.1161 39 1 4.9115 4.7389 -4.5005 40 1 3.3719 5.6282 -4.5850 41 1 4.4549 7.6007 -3.5426 42 1 5.2934 7.1284 -5.0402 43 1 6.9143 7.6057 -3.2259 44 1 6.9797 5.8934 -3.7067 45 1 5.4390 7.0143 -1.3222 46 1 6.9783 6.1241 -1.2380 47 1 5.0574 4.6243 -0.7826 48 1 5.8953 4.1523 -2.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114558956.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -84.358595 kcal Electronic energy + Delta-G solvation = -23742.185653 eV Core-core repulsion = 20602.119386 eV Total energy + Delta-G solvation = -3140.066267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.57938 -38.36383 -35.18694 -34.43697 -32.71526 -31.05884 -30.56859 -29.64694 -26.99084 -25.97118 -23.91131 -23.00165 -22.52027 -21.86656 -20.20784 -19.34435 -17.87729 -16.67308 -16.23416 -15.51421 -15.11834 -14.60913 -14.41115 -14.33439 -14.00447 -13.83458 -13.35130 -13.25577 -12.87489 -12.64668 -12.21818 -12.13503 -12.02630 -11.79040 -11.60601 -11.54201 -11.51479 -11.24136 -10.98028 -10.95289 -10.90999 -10.71359 -10.48000 -10.44866 -10.36796 -10.13044 -10.05217 -9.82832 -9.68250 -9.61549 -8.81332 -8.51113 -7.64273 -6.17481 -4.24446 3.23670 3.28889 3.31231 3.51128 4.02454 4.33879 4.80458 4.85775 4.90388 5.14895 5.26516 5.29364 5.35971 5.51402 5.62357 5.64147 5.66779 5.69029 5.73648 5.78980 5.81273 5.88516 5.94054 6.03449 6.07905 6.12709 6.19577 6.23626 6.28318 6.31035 6.31273 6.38704 6.43948 6.48326 6.50310 6.56081 6.61905 6.70088 6.81730 6.84940 6.93201 7.27877 7.62623 7.77281 8.08072 8.44218 8.81496 9.11610 9.43321 10.88924 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.006454 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.748009 B = 4337.077269 C = 6059.414623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.117 3.883 3 N -0.596 5.596 4 C 0.229 3.771 5 C -0.537 4.537 6 H 0.059 0.941 7 C 0.066 3.934 8 N -0.891 5.891 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.520 3.480 14 O -0.578 6.578 15 C -0.110 4.110 16 H 0.111 0.889 17 C -0.144 4.144 18 C -0.090 4.090 19 C -0.087 4.087 20 C -0.113 4.113 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.120 4.120 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 5.669 -9.408 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.006 4.006 3 N -0.326 5.326 4 C 0.109 3.891 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.721 3.279 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.308 3.692 14 O -0.460 6.460 15 C -0.131 4.131 16 H 0.129 0.871 17 C -0.201 4.201 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.157 4.157 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.093 0.907 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.499 5.502 -9.726 11.186 hybrid contribution 1.044 -0.279 0.591 1.232 sum 1.544 5.223 -9.135 10.635 Atomic orbital electron populations 1.22100 0.97073 1.01041 1.01907 1.21192 0.93332 0.84060 1.02045 1.48261 1.62848 1.13094 1.08378 1.19629 0.95792 0.94195 0.79487 1.21469 0.97837 1.31154 1.07089 0.92250 1.24918 0.97973 0.94800 0.95977 1.69909 1.36817 1.32741 1.13480 0.86627 0.84713 0.78748 0.77838 1.20017 1.21158 1.20195 1.20563 0.78107 0.87540 0.82978 1.90561 1.51974 1.70523 1.32934 1.21296 1.00591 0.92381 0.98853 0.87115 1.21877 0.97956 0.98171 1.02089 1.21388 0.99692 0.96287 0.95447 1.21221 0.96426 0.97575 0.95290 1.21572 0.99749 0.96873 0.96865 1.21522 0.96699 0.97800 0.99511 1.21538 0.97198 1.00688 0.96207 1.21526 1.00102 0.97908 0.96110 1.21677 0.95858 0.96845 1.01365 0.92665 0.92780 0.92658 0.91760 0.90489 0.93113 0.95031 0.92505 0.91010 0.91926 0.93210 0.92043 0.91769 0.90943 0.92188 0.92269 0.92189 0.92589 0.92639 0.92271 0.92127 0.92290 0.90710 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.21 37.16 0.38 -2.34 16 2 C 0.12 2.25 6.06 -4.04 -0.02 2.23 16 3 N -0.60 -12.76 2.47 -175.06 -0.43 -13.19 16 4 C 0.23 5.38 4.75 -5.19 -0.02 5.36 16 5 C -0.54 -13.78 8.99 -34.44 -0.31 -14.09 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 9 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 13 C 0.52 10.99 6.82 -10.99 -0.07 10.92 16 14 O -0.58 -13.23 15.80 5.55 0.09 -13.14 16 15 C -0.11 -2.02 1.77 -91.77 -0.16 -2.18 16 16 H 0.11 2.23 5.35 -51.93 -0.28 1.95 16 17 C -0.14 -2.39 8.78 37.16 0.33 -2.06 16 18 C -0.09 -1.45 3.48 -26.73 -0.09 -1.54 16 19 C -0.09 -1.18 2.08 -90.62 -0.19 -1.36 16 20 C -0.11 -1.33 5.20 -26.73 -0.14 -1.47 16 21 C -0.12 -1.24 5.92 -26.73 -0.16 -1.39 16 22 C -0.12 -1.28 5.92 -26.73 -0.16 -1.44 16 23 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 24 C -0.12 -1.70 4.98 -26.73 -0.13 -1.83 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 28 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 29 H 0.08 1.46 8.03 -51.93 -0.42 1.04 16 30 H 0.05 1.20 4.26 -51.93 -0.22 0.98 16 31 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.07 1.30 5.76 -51.93 -0.30 1.00 16 34 H 0.06 0.91 6.31 -51.93 -0.33 0.59 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 1.05 8.09 -51.93 -0.42 0.62 16 38 H 0.07 0.97 6.28 -51.93 -0.33 0.65 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.07 1.21 6.47 -51.93 -0.34 0.88 16 48 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 LS Contribution 365.11 15.07 5.50 5.50 Total: -1.00 -27.65 365.11 -9.05 -36.70 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.90 Total: 3.43 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -1.02 Total: -11.22 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.30 Total: -36.62 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.65 -9.05 -36.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114558956.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.662 kcal (2) G-P(sol) polarization free energy of solvation -27.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds