Wall clock time and date at job start Tue Mar 31 2020 06:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46984 * 2 1 4 4 C 1.37094 * 120.00127 * 95.85763 * 3 2 1 5 5 H 1.07993 * 120.00159 * 46.36833 * 4 3 2 6 6 C 1.38952 * 119.99665 * 226.37035 * 4 3 2 7 7 N 1.31410 * 119.99831 * 205.53408 * 6 4 3 8 8 Si 1.86804 * 119.99990 * 25.53619 * 6 4 3 9 9 H 1.48498 * 109.47280 * 94.24797 * 8 6 4 10 10 H 1.48501 * 109.46832 * 214.24707 * 8 6 4 11 11 H 1.48494 * 109.46918 * 334.24689 * 8 6 4 12 12 C 1.34779 * 119.99462 * 275.85381 * 3 2 1 13 13 O 1.21293 * 119.99487 * 174.69388 * 12 3 2 14 14 C 1.50697 * 120.00189 * 354.68677 * 12 3 2 15 15 H 1.08996 * 109.47013 * 17.95748 * 14 12 3 16 16 C 1.53002 * 109.46921 * 137.95673 * 14 12 3 17 17 C 1.53001 * 109.47227 * 189.08693 * 16 14 12 18 18 C 1.54263 * 110.02848 * 288.73934 * 17 16 14 19 19 C 1.54885 * 104.19944 * 217.10469 * 18 17 16 20 20 C 1.54889 * 102.74728 * 37.94580 * 19 18 17 21 21 C 1.53877 * 110.03347 * 171.57600 * 17 16 14 22 22 C 1.52998 * 109.47375 * 257.95057 * 14 12 3 23 23 C 1.52995 * 109.47659 * 301.27670 * 22 14 12 24 24 C 1.53011 * 109.46650 * 61.27585 * 22 14 12 25 25 H 1.09000 * 109.47356 * 184.87317 * 1 2 3 26 26 H 1.09003 * 109.47022 * 304.87289 * 1 2 3 27 27 H 1.08996 * 109.47336 * 64.86933 * 1 2 3 28 28 H 1.08990 * 109.46737 * 239.99718 * 2 1 3 29 29 H 1.09006 * 109.46881 * 119.99656 * 2 1 3 30 30 H 0.97005 * 119.99981 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.47062 * 309.07891 * 16 14 12 32 32 H 1.09001 * 109.47520 * 69.08318 * 16 14 12 33 33 H 1.08991 * 110.01952 * 50.18230 * 17 16 14 34 34 H 1.09007 * 110.48886 * 335.78888 * 18 17 16 35 35 H 1.09007 * 110.48845 * 98.42724 * 18 17 16 36 36 H 1.09003 * 110.75855 * 279.63248 * 19 18 17 37 37 H 1.08998 * 110.91833 * 156.32849 * 19 18 17 38 38 H 1.08997 * 110.48785 * 203.38355 * 20 19 18 39 39 H 1.09003 * 110.48945 * 80.73034 * 20 19 18 40 40 H 1.08991 * 110.03260 * 238.56203 * 21 17 16 41 41 H 1.08998 * 110.03155 * 359.95151 * 21 17 16 42 42 H 1.09000 * 109.47340 * 181.27173 * 22 14 12 43 43 H 1.09000 * 109.47197 * 65.43733 * 23 22 14 44 44 H 1.08994 * 109.47391 * 185.44443 * 23 22 14 45 45 H 1.09007 * 109.46579 * 305.44750 * 23 22 14 46 46 H 1.08992 * 109.46887 * 55.03162 * 24 22 14 47 47 H 1.08997 * 109.46892 * 175.03298 * 24 22 14 48 48 H 1.08997 * 109.46919 * 295.02962 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3611 1.9871 1.1811 5 1 2.9757 1.4635 1.8982 6 6 1.9175 3.2751 1.4554 7 7 2.5963 4.0424 2.2784 8 14 0.3563 3.9157 0.6543 9 1 -0.7956 3.6893 1.5638 10 1 0.4978 5.3697 0.3873 11 1 0.1258 3.1976 -0.6248 12 6 2.1307 2.0562 -1.1612 13 8 2.4423 3.2284 -1.1535 14 6 1.8693 1.3545 -2.4690 15 1 1.3085 0.4384 -2.2839 16 6 1.0589 2.2719 -3.3869 17 6 0.6002 1.4864 -4.6171 18 6 1.8042 1.1926 -5.5356 19 6 1.2308 1.3263 -6.9682 20 6 0.2515 2.5188 -6.8344 21 6 -0.3871 2.3297 -5.4429 22 6 3.2013 1.0108 -3.1386 23 6 4.0022 2.2937 -3.3695 24 6 3.9981 0.0679 -2.2346 25 1 -0.3634 -1.0239 0.0873 26 1 -0.3633 0.5876 0.8431 27 1 -0.3634 0.4364 -0.9303 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 2.2869 4.9416 2.4697 31 1 0.1877 2.6463 -2.8492 32 1 1.6795 3.1108 -3.7020 33 1 0.1279 0.5536 -4.3094 34 1 2.5962 1.9235 -5.3719 35 1 2.1757 0.1819 -5.3661 36 1 0.6986 0.4200 -7.2574 37 1 2.0208 1.5536 -7.6839 38 1 -0.5103 2.4760 -7.6128 39 1 0.7927 3.4639 -6.8805 40 1 -1.3382 1.8056 -5.5367 41 1 -0.5401 3.2982 -4.9668 42 1 3.0121 0.5235 -4.0950 43 1 4.2745 2.7300 -2.4084 44 1 4.9062 2.0614 -3.9322 45 1 3.3962 3.0039 -3.9322 46 1 3.3924 -0.8069 -1.9983 47 1 4.9063 -0.2470 -2.7486 48 1 4.2633 0.5860 -1.3130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116006606.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:18 Heat of formation + Delta-G solvation = -46.069345 kcal Electronic energy + Delta-G solvation = -24851.362291 eV Core-core repulsion = 21712.956370 eV Total energy + Delta-G solvation = -3138.405921 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -39.96622 -38.14125 -35.43192 -34.67560 -32.16697 -31.38349 -29.52800 -28.72351 -27.67930 -26.75130 -24.66782 -23.15000 -22.37725 -20.92973 -20.02397 -19.47962 -18.20667 -16.98291 -16.08524 -15.76206 -15.04743 -14.99894 -14.60574 -14.14000 -13.64846 -13.32272 -13.31696 -12.96697 -12.92224 -12.86848 -12.52230 -12.14517 -11.91224 -11.76598 -11.45609 -11.41228 -11.26550 -11.13887 -11.09861 -10.93685 -10.78998 -10.60418 -10.53449 -10.41201 -10.37086 -10.16748 -10.04852 -9.94308 -9.79796 -9.53052 -8.57563 -8.12778 -7.42000 -6.16189 -3.86444 3.33506 3.53146 3.54489 4.03312 4.48906 4.61581 4.65491 4.68012 4.83357 5.15915 5.22958 5.27429 5.39990 5.42556 5.49321 5.54254 5.63210 5.65134 5.69152 5.72402 5.84266 5.88947 5.92707 5.97196 5.98453 6.02216 6.05686 6.08066 6.11098 6.19626 6.26873 6.28527 6.33648 6.37203 6.39818 6.46585 6.51950 6.55256 6.63857 6.68361 6.79813 6.87310 7.03072 7.93887 8.16838 8.93612 9.11865 9.54980 10.04039 10.91577 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019150 B = 0.006562 C = 0.006097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.794510 B = 4265.903177 C = 4590.970091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.096 3.904 3 N -0.469 5.469 4 C -0.356 4.356 5 H 0.088 0.912 6 C 0.101 3.899 7 N -0.860 5.860 8 Si 0.911 3.089 9 H -0.303 1.303 10 H -0.292 1.292 11 H -0.267 1.267 12 C 0.485 3.515 13 O -0.552 6.552 14 C -0.104 4.104 15 H 0.078 0.922 16 C -0.100 4.100 17 C -0.089 4.089 18 C -0.125 4.125 19 C -0.128 4.128 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.095 4.095 23 C -0.149 4.149 24 C -0.152 4.152 25 H 0.052 0.948 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.269 0.731 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.804 -8.710 -15.643 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.028 4.028 3 N -0.191 5.191 4 C -0.481 4.481 5 H 0.105 0.895 6 C -0.109 4.109 7 N -0.494 5.494 8 Si 0.741 3.259 9 H -0.232 1.232 10 H -0.218 1.218 11 H -0.191 1.191 12 C 0.274 3.726 13 O -0.433 6.433 14 C -0.126 4.126 15 H 0.096 0.904 16 C -0.138 4.138 17 C -0.108 4.108 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.114 4.114 23 C -0.206 4.206 24 C -0.209 4.209 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.590 -7.940 -15.494 17.776 hybrid contribution -0.951 0.355 -0.125 1.023 sum -4.541 -7.585 -15.619 17.948 Atomic orbital electron populations 1.22259 0.97705 1.00790 1.02117 1.21662 0.93215 0.86642 1.01255 1.43675 1.58417 1.11266 1.05747 1.18669 1.33470 0.99538 0.96429 0.89469 1.25284 0.96568 0.95501 0.93520 1.69839 1.36141 1.07773 1.35682 0.86292 0.81957 0.78286 0.79380 1.23210 1.21840 1.19149 1.20106 0.79945 0.87912 0.84617 1.90436 1.50207 1.16212 1.86434 1.21444 0.97166 0.99227 0.94744 0.90377 1.21664 0.99593 0.98160 0.94349 1.21802 0.95399 0.98477 0.95116 1.22816 0.98085 1.01640 0.93655 1.22549 0.98451 0.98121 0.97415 1.22345 0.98349 0.98617 0.96837 1.22225 0.98194 1.00292 0.95284 1.21410 0.93828 0.96865 0.99272 1.21972 0.98521 0.97060 1.03082 1.21967 0.99261 0.99091 1.00628 0.92862 0.92055 0.93369 0.92105 0.91105 0.92078 0.92221 0.90515 0.91379 0.90369 0.91299 0.91941 0.91988 0.92246 0.91783 0.92225 0.91702 0.89413 0.90898 0.94046 0.92496 0.93021 0.93324 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.03 37.16 0.37 -2.50 16 2 C 0.10 1.78 5.64 -4.04 -0.02 1.75 16 3 N -0.47 -11.06 2.01 -114.81 -0.23 -11.29 16 4 C -0.36 -10.03 9.55 -14.93 -0.14 -10.17 16 5 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 6 C 0.10 2.99 4.65 -17.47 -0.08 2.91 16 7 N -0.86 -26.68 13.96 55.50 0.77 -25.91 16 8 Si 0.91 24.54 26.01 -169.99 -4.42 20.12 16 9 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 10 H -0.29 -8.12 7.11 56.52 0.40 -7.72 16 11 H -0.27 -6.95 5.31 56.52 0.30 -6.65 16 12 C 0.49 11.22 2.82 -10.99 -0.03 11.18 16 13 O -0.55 -15.01 11.36 5.55 0.06 -14.95 16 14 C -0.10 -1.83 1.53 -91.77 -0.14 -1.97 16 15 H 0.08 1.26 5.02 -51.93 -0.26 1.00 16 16 C -0.10 -1.66 3.56 -26.73 -0.10 -1.76 16 17 C -0.09 -1.14 2.90 -89.50 -0.26 -1.40 16 18 C -0.13 -1.40 4.31 -25.08 -0.11 -1.51 16 19 C -0.13 -1.25 6.91 -24.74 -0.17 -1.42 16 20 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 21 C -0.12 -1.43 6.45 -25.61 -0.17 -1.60 16 22 C -0.10 -1.46 2.16 -90.62 -0.20 -1.66 16 23 C -0.15 -2.49 7.56 37.16 0.28 -2.21 16 24 C -0.15 -2.33 8.31 37.16 0.31 -2.02 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 0.80 7.43 -51.93 -0.39 0.42 16 28 H 0.06 0.96 4.20 -51.93 -0.22 0.75 16 29 H 0.07 1.28 7.99 -51.93 -0.42 0.86 16 30 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 31 H 0.06 1.11 7.70 -51.93 -0.40 0.71 16 32 H 0.08 1.36 5.74 -51.93 -0.30 1.06 16 33 H 0.07 0.84 8.06 -51.93 -0.42 0.42 16 34 H 0.08 0.95 5.20 -51.93 -0.27 0.68 16 35 H 0.07 0.72 6.57 -51.93 -0.34 0.38 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 42 H 0.09 1.13 3.92 -51.93 -0.20 0.93 16 43 H 0.07 1.51 6.54 -51.93 -0.34 1.17 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.93 5.03 -51.92 -0.26 0.67 16 46 H 0.05 0.71 6.57 -51.93 -0.34 0.37 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.07 1.24 7.39 -51.93 -0.38 0.85 16 LS Contribution 340.75 15.07 5.14 5.14 Total: -1.00 -32.20 340.75 -7.70 -39.90 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -8.40 Total: 0.81 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.62 Total: -13.81 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.54 Total: -37.20 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.06 Total: -14.95 kcal Atomic # 14 Polarization: 24.54 SS G_CDS: -4.42 Total: 20.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.20 -7.70 -39.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116006606.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.171 kcal (2) G-P(sol) polarization free energy of solvation -32.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds