Wall clock time and date at job start Tue Mar 31 2020 06:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46502 * 109.46921 * 2 1 4 4 C 1.37094 * 120.00043 * 263.36207 * 3 2 1 5 5 H 1.08003 * 119.99537 * 197.16481 * 4 3 2 6 6 C 1.38947 * 119.99922 * 17.17052 * 4 3 2 7 7 N 1.31407 * 120.00420 * 16.22202 * 6 4 3 8 8 Si 1.86805 * 119.99739 * 196.22407 * 6 4 3 9 9 H 1.48499 * 109.46947 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46870 * 119.99821 * 8 6 4 11 11 H 1.48503 * 109.46980 * 239.99609 * 8 6 4 12 12 C 1.34777 * 119.99698 * 83.36677 * 3 2 1 13 13 O 1.21290 * 119.99984 * 185.85725 * 12 3 2 14 14 C 1.50702 * 120.00232 * 5.85885 * 12 3 2 15 15 H 1.09000 * 109.47203 * 347.84373 * 14 12 3 16 16 C 1.53000 * 109.47325 * 227.84242 * 14 12 3 17 17 C 1.52999 * 109.47434 * 165.05886 * 16 14 12 18 18 C 1.54260 * 110.48965 * 188.59466 * 17 16 14 19 19 C 1.53876 * 106.64252 * 217.73571 * 18 17 16 20 20 C 1.54266 * 106.59598 * 359.97438 * 19 18 17 21 21 C 1.54893 * 104.19834 * 23.61243 * 20 19 18 22 22 C 1.53002 * 109.47183 * 107.84497 * 14 12 3 23 23 C 1.53003 * 109.46866 * 303.31525 * 22 14 12 24 24 C 1.52996 * 109.47179 * 63.31527 * 22 14 12 25 25 H 1.09000 * 109.47229 * 60.00154 * 1 2 3 26 26 H 1.09005 * 109.47143 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47197 * 300.00128 * 1 2 3 28 28 H 1.09004 * 109.47108 * 240.00062 * 2 1 3 29 29 H 1.08997 * 109.46745 * 120.00004 * 2 1 3 30 30 H 0.96991 * 120.00410 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.46861 * 45.05669 * 16 14 12 32 32 H 1.08995 * 109.47184 * 285.06507 * 16 14 12 33 33 H 1.09005 * 110.53943 * 311.20993 * 17 16 14 34 34 H 1.09007 * 110.03323 * 98.42379 * 18 17 16 35 35 H 1.09005 * 110.03073 * 337.04870 * 18 17 16 36 36 H 1.08998 * 110.02820 * 119.25693 * 19 18 17 37 37 H 1.08993 * 110.03358 * 240.69026 * 19 18 17 38 38 H 1.08999 * 110.48271 * 142.28427 * 20 19 18 39 39 H 1.08995 * 110.48859 * 264.79901 * 20 19 18 40 40 H 1.08995 * 110.75934 * 80.36732 * 21 20 19 41 41 H 1.08991 * 110.75671 * 203.55827 * 21 20 19 42 42 H 1.09001 * 109.47222 * 183.32223 * 22 14 12 43 43 H 1.09007 * 109.46796 * 65.47140 * 23 22 14 44 44 H 1.09000 * 109.46822 * 185.46772 * 23 22 14 45 45 H 1.09001 * 109.47423 * 305.47303 * 23 22 14 46 46 H 1.09000 * 109.47251 * 57.97894 * 24 22 14 47 47 H 1.09004 * 109.46884 * 177.97665 * 24 22 14 48 48 H 1.08997 * 109.47359 * 297.97923 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3762 1.9818 -1.1793 5 1 2.9849 2.8739 -1.1680 6 6 1.9556 1.4428 -2.3890 7 7 0.9740 0.5696 -2.4134 8 14 2.7858 1.9597 -3.9806 9 1 3.8538 2.9477 -3.6836 10 1 3.3815 0.7686 -4.6376 11 1 1.7816 2.5739 -4.8859 12 6 2.1158 2.0615 1.1594 13 8 2.4178 3.2362 1.1498 14 6 1.8496 1.3626 2.4678 15 1 1.3899 0.3933 2.2750 16 6 0.9054 2.2147 3.3183 17 6 0.3413 1.3662 4.4597 18 6 -0.7725 2.1325 5.2026 19 6 -0.6209 1.7924 6.6956 20 6 0.5797 0.8304 6.8087 21 6 1.4227 1.1244 5.5430 22 6 3.1688 1.1616 3.2163 23 6 4.1427 0.3799 2.3323 24 6 3.7732 2.5246 3.5596 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.6807 0.1931 -3.2578 31 1 0.0869 2.5795 2.6978 32 1 1.4532 3.0616 3.7316 33 1 -0.0368 0.4170 4.0798 34 1 -1.7503 1.8109 4.8438 35 1 -0.6534 3.2052 5.0500 36 1 -0.4273 2.6999 7.2674 37 1 -1.5250 1.3058 7.0614 38 1 1.1561 1.0439 7.7089 39 1 0.2399 -0.2053 6.8111 40 1 2.0333 2.0162 5.6840 41 1 2.0460 0.2679 5.2864 42 1 2.9843 0.6042 4.1346 43 1 4.4029 0.9796 1.4599 44 1 5.0455 0.1525 2.8992 45 1 3.6736 -0.5489 2.0079 46 1 3.0645 3.0956 4.1595 47 1 4.6946 2.3816 4.1241 48 1 3.9910 3.0676 2.6400 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116006608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:26 Heat of formation + Delta-G solvation = -51.406531 kcal Electronic energy + Delta-G solvation = -24420.797852 eV Core-core repulsion = 21282.160493 eV Total energy + Delta-G solvation = -3138.637359 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.08 seconds Orbital eigenvalues (eV) -39.66754 -37.95232 -35.57927 -34.59733 -31.67804 -31.31345 -29.32443 -28.63111 -27.48721 -26.68309 -24.75911 -22.94857 -22.08689 -20.83061 -20.07665 -19.56110 -17.73163 -16.73579 -16.28682 -15.86864 -14.90818 -14.61562 -14.44919 -14.04022 -13.79129 -13.31520 -13.19941 -12.93839 -12.71186 -12.62150 -12.34666 -11.81639 -11.72220 -11.51804 -11.27069 -11.21723 -11.11328 -11.07498 -11.00846 -10.84326 -10.74010 -10.47677 -10.39645 -10.30106 -10.19519 -10.12503 -9.98729 -9.89035 -9.82185 -9.57487 -8.84602 -8.04031 -7.56147 -6.19724 -3.75789 3.17924 3.28829 3.35462 4.01162 4.18335 4.65661 4.73759 4.78692 5.02099 5.15299 5.23142 5.40787 5.48268 5.51741 5.57366 5.65243 5.70236 5.73543 5.78055 5.92073 5.97130 6.02262 6.06172 6.11117 6.12757 6.16239 6.25508 6.29846 6.35269 6.41210 6.42042 6.45585 6.55415 6.57196 6.68680 6.70618 6.74975 6.80419 6.87655 6.93716 7.07984 7.35663 7.55077 7.91293 8.21268 8.63813 9.29881 9.55930 10.13428 10.77013 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025278 B = 0.005008 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.417028 B = 5589.978846 C = 5990.011927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 N -0.446 5.446 4 C -0.296 4.296 5 H 0.098 0.902 6 C 0.025 3.975 7 N -0.877 5.877 8 Si 0.920 3.080 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.284 1.284 12 C 0.461 3.539 13 O -0.590 6.590 14 C -0.098 4.098 15 H 0.080 0.920 16 C -0.095 4.095 17 C -0.089 4.089 18 C -0.122 4.122 19 C -0.123 4.123 20 C -0.127 4.127 21 C -0.123 4.123 22 C -0.089 4.089 23 C -0.150 4.150 24 C -0.151 4.151 25 H 0.102 0.898 26 H 0.032 0.968 27 H 0.020 0.980 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.263 0.737 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.046 0.954 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.038 0.962 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -3.591 13.623 14.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.005 3.995 3 N -0.164 5.164 4 C -0.424 4.424 5 H 0.116 0.884 6 C -0.176 4.176 7 N -0.518 5.518 8 Si 0.748 3.252 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.210 1.210 12 C 0.249 3.751 13 O -0.475 6.475 14 C -0.120 4.120 15 H 0.098 0.902 16 C -0.133 4.133 17 C -0.108 4.108 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.165 4.165 21 C -0.160 4.160 22 C -0.108 4.108 23 C -0.207 4.207 24 C -0.208 4.208 25 H 0.121 0.879 26 H 0.051 0.949 27 H 0.039 0.961 28 H 0.110 0.890 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.057 0.943 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.836 -3.122 13.427 13.811 hybrid contribution 0.132 -0.025 -0.939 0.948 sum -0.704 -3.147 12.488 12.898 Atomic orbital electron populations 1.22309 0.96791 0.99563 1.02491 1.21275 0.94454 0.83921 0.99831 1.43786 1.56100 1.11050 1.05486 1.19735 1.28922 1.11418 0.82309 0.88445 1.25224 0.95711 0.97451 0.99214 1.70026 1.24536 1.30948 1.26291 0.85948 0.79313 0.78334 0.81618 1.19469 1.20831 1.20982 1.19918 0.83393 0.86932 0.84840 1.90465 1.53584 1.16264 1.87185 1.21342 0.96348 0.99774 0.94519 0.90224 1.21537 0.98276 0.97994 0.95472 1.22053 0.94871 0.98788 0.95046 1.22206 0.98723 1.00578 0.94441 1.22118 0.98103 0.99126 0.96762 1.22394 0.96647 0.99186 0.98246 1.22863 0.97352 1.01733 0.94074 1.21270 0.94093 0.97100 0.98329 1.21902 0.98444 1.00185 1.00161 1.22010 0.99012 0.97016 1.02721 0.87945 0.94923 0.96107 0.89014 0.94988 0.92616 0.92203 0.90672 0.91027 0.92154 0.91752 0.92247 0.92394 0.92201 0.91980 0.91125 0.90952 0.90287 0.91993 0.93495 0.92947 0.92697 0.94312 0.90568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.46 37.16 0.35 -2.94 16 2 C 0.13 2.88 4.90 -4.04 -0.02 2.86 16 3 N -0.45 -11.17 2.64 -114.81 -0.30 -11.47 16 4 C -0.30 -8.14 9.35 -14.94 -0.14 -8.28 16 5 H 0.10 2.85 7.40 -52.48 -0.39 2.46 16 6 C 0.03 0.66 5.01 -17.47 -0.09 0.57 16 7 N -0.88 -22.58 8.19 55.50 0.45 -22.13 16 8 Si 0.92 20.71 29.58 -169.99 -5.03 15.68 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.46 10.93 4.83 -10.98 -0.05 10.87 16 13 O -0.59 -15.94 14.29 5.55 0.08 -15.86 16 14 C -0.10 -1.80 1.47 -91.77 -0.14 -1.94 16 15 H 0.08 1.44 4.93 -51.93 -0.26 1.18 16 16 C -0.10 -1.59 3.84 -26.73 -0.10 -1.69 16 17 C -0.09 -1.18 2.83 -88.92 -0.25 -1.43 16 18 C -0.12 -1.46 6.37 -25.62 -0.16 -1.62 16 19 C -0.12 -1.26 6.80 -25.61 -0.17 -1.44 16 20 C -0.13 -1.28 6.83 -25.07 -0.17 -1.45 16 21 C -0.12 -1.43 4.65 -24.69 -0.11 -1.55 16 22 C -0.09 -1.44 2.24 -90.62 -0.20 -1.64 16 23 C -0.15 -2.48 8.68 37.16 0.32 -2.16 16 24 C -0.15 -2.49 8.18 37.16 0.30 -2.19 16 25 H 0.10 2.53 5.88 -51.93 -0.31 2.22 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.02 0.42 7.59 -51.93 -0.39 0.02 16 28 H 0.09 2.22 6.18 -51.93 -0.32 1.90 16 29 H 0.03 0.63 5.10 -51.93 -0.26 0.37 16 30 H 0.26 6.47 8.31 -40.82 -0.34 6.13 16 31 H 0.06 1.11 8.05 -51.93 -0.42 0.69 16 32 H 0.07 1.29 5.40 -51.93 -0.28 1.01 16 33 H 0.07 0.96 7.98 -51.93 -0.41 0.55 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.79 7.84 -51.93 -0.41 0.39 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.85 6.75 -51.93 -0.35 0.50 16 41 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 42 H 0.08 1.09 4.38 -51.93 -0.23 0.86 16 43 H 0.06 1.22 7.34 -51.93 -0.38 0.84 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.84 7.06 -51.93 -0.37 0.47 16 46 H 0.05 0.87 5.03 -51.93 -0.26 0.60 16 47 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 1.54 6.17 -51.93 -0.32 1.22 16 LS Contribution 343.91 15.07 5.18 5.18 Total: -1.00 -28.41 343.91 -8.43 -36.84 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -8.18 Total: 5.77 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -0.64 Total: -14.02 kcal Atomic # 7 Polarization: -33.75 SS G_CDS: 0.15 Total: -33.60 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: 0.08 Total: -15.86 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.41 -8.43 -36.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116006608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.564 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.08 seconds