Wall clock time and date at job start Tue Mar 31 2020 06:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42900 * 109.47077 * 2 1 4 4 C 1.42900 * 113.99928 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.88550 * 18.65349 * 4 3 2 6 6 C 1.54151 * 113.71950 * 247.25165 * 4 3 2 7 7 C 1.53949 * 87.22312 * 220.84601 * 6 4 3 8 8 H 1.09000 * 113.66530 * 270.13437 * 7 6 4 9 9 N 1.46905 * 113.65793 * 139.17508 * 7 6 4 10 10 C 1.46895 * 110.99982 * 98.74926 * 9 7 6 11 11 C 1.46903 * 111.00148 * 334.79226 * 9 7 6 12 12 C 1.52999 * 109.47167 * 190.00151 * 11 9 7 13 13 C 1.52997 * 109.47026 * 179.97438 * 12 11 9 14 14 C 1.50697 * 109.47105 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00180 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00269 * 180.02562 * 14 13 12 17 17 N 1.31523 * 119.99557 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00284 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47150 * 269.99747 * 18 16 14 20 20 H 1.48497 * 109.46814 * 30.00002 * 18 16 14 21 21 H 1.48505 * 109.46934 * 149.99849 * 18 16 14 22 22 C 1.52907 * 113.66341 * 149.99624 * 4 3 2 23 23 C 1.52909 * 121.13916 * 265.09130 * 22 4 3 24 24 C 1.53947 * 86.78242 * 100.81935 * 23 22 4 25 25 C 1.52910 * 121.13788 * 13.65591 * 22 4 3 26 26 H 1.09005 * 109.46711 * 59.99944 * 1 2 3 27 27 H 1.08996 * 109.47316 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47085 * 300.00110 * 1 2 3 29 29 H 1.08995 * 109.46841 * 239.99550 * 2 1 3 30 30 H 1.09000 * 109.46601 * 119.99591 * 2 1 3 31 31 H 1.09002 * 113.63423 * 106.26888 * 6 4 3 32 32 H 1.08992 * 113.57820 * 335.41900 * 6 4 3 33 33 H 1.08998 * 109.47556 * 290.26319 * 10 9 7 34 34 H 1.09002 * 109.47249 * 50.26092 * 10 9 7 35 35 H 1.09006 * 109.47185 * 170.26141 * 10 9 7 36 36 H 1.09004 * 109.46583 * 69.99915 * 11 9 7 37 37 H 1.09006 * 109.47008 * 310.00146 * 11 9 7 38 38 H 1.09000 * 109.47135 * 60.00114 * 12 11 9 39 39 H 1.08996 * 109.47118 * 300.00053 * 12 11 9 40 40 H 1.09000 * 109.47041 * 60.00092 * 13 12 11 41 41 H 1.08996 * 109.47244 * 300.00011 * 13 12 11 42 42 H 0.97002 * 119.99516 * 179.97438 * 17 16 14 43 43 H 1.09002 * 113.66178 * 215.29305 * 23 22 4 44 44 H 1.09000 * 113.66055 * 346.34632 * 23 22 4 45 45 H 1.08993 * 113.58517 * 270.12707 * 24 23 22 46 46 H 1.09005 * 113.57561 * 139.33511 * 24 23 22 47 47 H 1.09004 * 113.66237 * 13.64705 * 25 22 4 48 48 H 1.08995 * 113.66838 * 144.60992 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9288 0.5450 -0.3203 6 6 4.0054 2.0533 1.3022 7 6 4.9807 2.8527 0.4192 8 1 5.9158 2.3306 0.2165 9 7 5.1847 4.2362 0.8693 10 6 6.4242 4.3590 1.6480 11 6 4.0293 4.7150 1.6398 12 6 4.1627 6.2206 1.8765 13 6 2.9590 6.7194 2.6785 14 6 3.0907 8.2023 2.9122 15 1 3.9470 8.7358 2.5270 16 6 2.1179 8.8781 3.6180 17 7 1.0748 8.2285 4.0867 18 14 2.2815 10.7161 3.9083 19 1 3.0158 10.9534 5.1770 20 1 3.0285 11.3306 2.7816 21 1 0.9301 11.3254 3.9972 22 6 3.9473 2.7175 -0.6997 23 6 4.3715 2.6868 -2.1684 24 6 3.0036 3.3172 -2.4868 25 6 3.0059 3.8704 -1.0501 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.4967 1.3170 1.9384 32 1 3.2974 2.6783 1.8463 33 1 6.3042 3.8509 2.6048 34 1 7.2468 3.9043 1.0959 35 1 6.6417 5.4130 1.8211 36 1 3.9928 4.1981 2.5988 37 1 3.1134 4.5143 1.0838 38 1 4.1992 6.7374 0.9175 39 1 5.0785 6.4213 2.4325 40 1 2.9220 6.2027 3.6375 41 1 2.0434 6.5188 2.1221 42 1 0.3906 8.7039 4.5835 43 1 5.2163 3.3379 -2.3934 44 1 4.4928 1.6799 -2.5678 45 1 2.2180 2.5845 -2.6707 46 1 3.0481 4.0919 -3.2524 47 1 2.0362 3.8090 -0.5561 48 1 3.4663 4.8542 -0.9593 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120907364.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:10 Heat of formation + Delta-G solvation = -7.321637 kcal Electronic energy + Delta-G solvation = -23396.476517 eV Core-core repulsion = 20259.750822 eV Total energy + Delta-G solvation = -3136.725694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -40.98870 -37.41744 -36.59321 -34.08439 -33.01115 -31.23034 -30.68359 -27.21695 -25.78594 -25.46459 -24.52829 -23.49296 -22.81105 -21.89396 -20.53292 -19.42515 -18.00134 -16.90778 -16.22559 -16.02103 -15.58375 -15.23834 -15.00536 -14.46245 -14.39464 -13.97020 -13.52695 -13.06903 -12.94867 -12.66404 -12.57654 -12.30639 -12.09732 -11.97778 -11.73690 -11.57419 -11.42137 -11.31942 -11.21031 -11.02450 -10.90460 -10.70695 -10.47337 -10.41206 -10.24983 -10.00487 -9.82546 -9.50911 -9.26192 -9.25408 -8.97531 -8.28008 -7.89017 -5.93417 -3.95167 3.36055 3.42060 3.45992 3.57106 4.26439 4.47388 4.52153 4.57500 4.65370 4.85255 4.94171 4.96605 5.04602 5.09483 5.22326 5.23789 5.42283 5.48924 5.52214 5.56141 5.61366 5.68615 5.73038 5.79209 5.82360 5.88488 5.99627 6.00803 6.05848 6.07123 6.11165 6.14781 6.26548 6.45116 6.47917 6.57316 6.69300 6.81031 6.89736 7.21280 7.27553 7.47093 7.51043 7.76233 7.92150 8.07812 8.51258 9.12193 9.68449 11.18022 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017183 B = 0.004074 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.117741 B = 6871.666874 C = 7516.997307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.364 6.364 4 C 0.089 3.911 5 H 0.083 0.917 6 C -0.192 4.192 7 C 0.076 3.924 8 H 0.095 0.905 9 N -0.524 5.524 10 C 0.026 3.974 11 C 0.049 3.951 12 C -0.104 4.104 13 C 0.023 3.977 14 C -0.517 4.517 15 H 0.054 0.946 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.274 1.274 21 H -0.287 1.287 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.138 4.138 25 C -0.100 4.100 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.045 0.955 40 H 0.012 0.988 41 H 0.016 0.984 42 H 0.259 0.741 43 H 0.085 0.915 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.522 -18.018 -10.585 21.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.030 3.970 5 H 0.101 0.899 6 C -0.231 4.231 7 C -0.033 4.033 8 H 0.113 0.887 9 N -0.245 5.245 10 C -0.123 4.123 11 C -0.077 4.077 12 C -0.142 4.142 13 C -0.015 4.015 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.718 3.282 19 H -0.208 1.208 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.092 4.092 23 C -0.159 4.159 24 C -0.176 4.176 25 C -0.138 4.138 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.030 0.970 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.104 0.896 44 H 0.076 0.924 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.091 0.909 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.290 -17.521 -10.902 21.303 hybrid contribution 0.133 0.131 1.077 1.093 sum 5.424 -17.390 -9.825 20.697 Atomic orbital electron populations 1.21742 0.93854 1.01929 1.03392 1.22469 0.95630 0.84422 0.99499 1.88006 1.20319 1.25507 1.94457 1.23223 0.81133 0.96470 0.96142 0.89938 1.24312 1.00507 1.00699 0.97578 1.22742 0.96303 0.88897 0.95389 0.88671 1.61961 1.03518 1.18295 1.40755 1.22387 0.91815 1.02470 0.95593 1.22547 0.92799 0.97370 0.95013 1.21648 1.00465 0.91757 1.00374 1.19058 0.92275 0.95569 0.94599 1.21258 1.06485 0.93774 1.33999 0.92746 1.25022 0.95376 0.98186 0.95893 1.69977 1.10513 1.35810 1.37290 0.86621 0.77256 0.85756 0.78535 1.20768 1.19864 1.21266 1.22887 0.96641 0.96007 0.93654 1.22705 0.97941 1.00378 0.94905 1.22806 0.97032 1.00064 0.97681 1.22460 0.98993 0.97444 0.94882 0.91848 0.91441 0.91644 0.93818 0.93723 0.91848 0.87676 0.95949 0.92388 0.90827 0.95286 0.90072 0.92768 0.93655 0.96979 0.96587 0.93110 0.89647 0.92355 0.90707 0.91893 0.90915 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.28 37.16 0.38 -1.01 16 2 C 0.06 0.57 6.50 37.16 0.24 0.81 16 3 O -0.36 -4.80 9.55 -35.23 -0.34 -5.14 16 4 C 0.09 1.06 4.19 -26.18 -0.11 0.95 16 5 H 0.08 0.83 7.87 -51.93 -0.41 0.42 16 6 C -0.19 -2.50 6.93 -25.64 -0.18 -2.68 16 7 C 0.08 0.98 3.84 -67.26 -0.26 0.73 16 8 H 0.10 1.08 7.81 -51.93 -0.41 0.68 16 9 N -0.52 -7.92 4.38 -234.34 -1.03 -8.95 16 10 C 0.03 0.35 9.21 60.06 0.55 0.90 16 11 C 0.05 0.89 2.91 -3.82 -0.01 0.88 16 12 C -0.10 -2.23 5.07 -26.73 -0.14 -2.37 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 15 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 18 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C -0.09 -1.15 1.00 -154.71 -0.16 -1.30 16 23 C -0.12 -1.36 7.84 -26.28 -0.21 -1.57 16 24 C -0.14 -1.67 8.08 -25.75 -0.21 -1.88 16 25 C -0.10 -1.45 5.08 -26.28 -0.13 -1.58 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.10 1.64 5.43 -51.93 -0.28 1.36 16 33 H 0.02 0.30 8.06 -51.93 -0.42 -0.11 16 34 H 0.06 0.67 7.90 -51.93 -0.41 0.26 16 35 H 0.07 1.07 6.75 -51.93 -0.35 0.72 16 36 H 0.03 0.54 6.96 -51.93 -0.36 0.18 16 37 H 0.08 1.51 4.77 -51.93 -0.25 1.26 16 38 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.04 0.95 6.68 -51.93 -0.35 0.61 16 40 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 1.17 7.37 -51.93 -0.38 0.79 16 48 H 0.10 1.56 7.27 -51.93 -0.38 1.18 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -30.60 367.35 -9.91 -40.51 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -9.03 Total: -0.84 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: -0.77 Total: -21.43 kcal Atomic # 7 Polarization: -35.42 SS G_CDS: -0.29 Total: -35.71 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.34 Total: -5.14 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.60 -9.91 -40.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120907364.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.186 kcal (2) G-P(sol) polarization free energy of solvation -30.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds