Wall clock time and date at job start Tue Mar 31 2020 06:39:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.47000 * 2 1 4 4 C 1.42901 * 114.00045 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.88671 * 339.66679 * 4 3 2 6 6 C 1.53947 * 113.66218 * 111.01319 * 4 3 2 7 7 C 1.53951 * 87.29229 * 139.20669 * 6 4 3 8 8 H 1.08999 * 113.66333 * 220.78790 * 7 6 4 9 9 N 1.46904 * 113.66087 * 89.83279 * 7 6 4 10 10 C 1.46898 * 111.00378 * 73.93307 * 9 7 6 11 11 C 1.46898 * 110.99726 * 309.97592 * 9 7 6 12 12 C 1.53006 * 109.46868 * 184.30818 * 11 9 7 13 13 C 1.53001 * 109.47040 * 180.02562 * 12 11 9 14 14 C 1.50694 * 109.47164 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99899 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00330 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99417 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00276 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47105 * 60.00079 * 18 16 14 20 20 H 1.48501 * 109.47225 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46893 * 299.99694 * 18 16 14 22 22 C 1.52906 * 113.66302 * 208.32239 * 4 3 2 23 23 C 1.52913 * 121.13979 * 94.90730 * 22 4 3 24 24 C 1.53958 * 86.78014 * 209.37636 * 23 22 4 25 25 C 1.52913 * 121.14083 * 346.34554 * 22 4 3 26 26 H 1.08997 * 109.46872 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46997 * 299.99799 * 1 2 3 28 28 H 1.08999 * 109.47459 * 59.99983 * 1 2 3 29 29 H 1.08999 * 109.47459 * 120.00017 * 2 1 3 30 30 H 1.09000 * 109.46997 * 240.00201 * 2 1 3 31 31 H 1.09003 * 113.57719 * 253.80819 * 6 4 3 32 32 H 1.08998 * 113.58135 * 24.52931 * 6 4 3 33 33 H 1.09000 * 109.47459 * 53.07590 * 10 9 7 34 34 H 1.08991 * 109.47309 * 173.08072 * 10 9 7 35 35 H 1.09006 * 109.46805 * 293.07937 * 10 9 7 36 36 H 1.08998 * 109.47083 * 304.30253 * 11 9 7 37 37 H 1.08993 * 109.47176 * 64.30773 * 11 9 7 38 38 H 1.08998 * 109.46807 * 299.99604 * 12 11 9 39 39 H 1.08998 * 109.47349 * 59.99560 * 12 11 9 40 40 H 1.08998 * 109.46783 * 299.99356 * 13 12 11 41 41 H 1.08998 * 109.47624 * 59.99465 * 13 12 11 42 42 H 0.97005 * 119.99635 * 179.97438 * 17 16 14 43 43 H 1.08997 * 113.66396 * 323.84656 * 23 22 4 44 44 H 1.09002 * 113.66219 * 94.90865 * 23 22 4 45 45 H 1.08999 * 113.58033 * 270.12858 * 24 23 22 46 46 H 1.09002 * 113.57791 * 139.34109 * 24 23 22 47 47 H 1.09003 * 113.66042 * 265.09989 * 25 22 4 48 48 H 1.08998 * 113.65933 * 36.05337 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9280 0.5549 0.3480 6 6 4.0063 2.0132 -1.3170 7 6 4.9816 2.8391 -0.4587 8 1 5.1340 3.8546 -0.8243 9 7 6.2413 2.1434 -0.1632 10 6 7.1080 2.0975 -1.3483 11 6 5.9874 0.7929 0.3561 12 6 7.3139 0.1412 0.7521 13 6 7.0496 -1.2656 1.2924 14 6 8.3561 -1.9078 1.6819 15 1 9.2823 -1.3667 1.5562 16 6 8.3690 -3.1860 2.1987 17 7 7.2410 -3.8446 2.3521 18 14 9.9885 -3.9817 2.6821 19 1 10.6480 -3.1638 3.7316 20 1 9.7319 -5.3467 3.2076 21 1 10.8728 -4.0669 1.4922 22 6 3.9455 2.7376 0.6638 23 6 4.3664 2.7499 2.1339 24 6 3.9422 4.2298 2.1529 25 6 3.0034 3.9002 0.9782 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 4.4974 1.2573 -1.9298 32 1 3.2985 2.6205 -1.8812 33 1 7.2369 3.1051 -1.7435 34 1 8.0797 1.6884 -1.0722 35 1 6.6502 1.4649 -2.1089 36 1 5.3384 0.8556 1.2295 37 1 5.5033 0.1926 -0.4141 38 1 7.9629 0.0786 -0.1213 39 1 7.7981 0.7416 1.5223 40 1 6.4004 -1.2034 2.1657 41 1 6.5657 -1.8658 0.5220 42 1 7.2502 -4.7440 2.7153 43 1 3.7536 2.1110 2.7697 44 1 5.4355 2.5994 2.2841 45 1 4.7459 4.9172 1.8892 46 1 3.4169 4.5211 3.0625 47 1 2.9835 4.6685 0.2052 48 1 2.0071 3.5845 1.2877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120907534.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:15 Heat of formation + Delta-G solvation = -1.714177 kcal Electronic energy + Delta-G solvation = -23614.108520 eV Core-core repulsion = 20477.625983 eV Total energy + Delta-G solvation = -3136.482536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28853 -37.26221 -36.77569 -34.03823 -32.84770 -31.27578 -30.55578 -27.42584 -25.89630 -25.34032 -24.59819 -23.91064 -22.76203 -21.59048 -20.48478 -19.78611 -18.02810 -16.79308 -16.20672 -15.87751 -15.76167 -15.26827 -14.88143 -14.65007 -14.46489 -14.04675 -13.32222 -13.15868 -12.95895 -12.71048 -12.30081 -12.21889 -12.14109 -11.98709 -11.80867 -11.75004 -11.62610 -11.34759 -11.17516 -11.05007 -10.95844 -10.79246 -10.55399 -10.54252 -10.16862 -10.03087 -9.80684 -9.56849 -9.32406 -9.13462 -9.04175 -8.33842 -8.01754 -5.99465 -4.01409 3.33824 3.38014 3.40711 3.71370 4.02440 4.44030 4.47614 4.63720 4.73746 4.87883 4.89334 5.00478 5.08705 5.20850 5.36432 5.40712 5.43178 5.45785 5.47396 5.56443 5.62395 5.69462 5.72965 5.78014 5.87829 5.90982 5.94065 5.95012 5.99640 6.04410 6.06806 6.08756 6.15202 6.30695 6.34609 6.50731 6.57517 6.70651 6.79182 7.10446 7.32688 7.37890 7.43131 7.67555 7.82481 8.00500 8.44203 9.05312 9.62561 11.11961 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.004442 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.570202 B = 6301.267061 C = 7084.439835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.374 6.374 4 C 0.060 3.940 5 H 0.106 0.894 6 C -0.188 4.188 7 C 0.091 3.909 8 H 0.093 0.907 9 N -0.517 5.517 10 C 0.025 3.975 11 C 0.041 3.959 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.518 4.518 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.093 4.093 23 C -0.126 4.126 24 C -0.138 4.138 25 C -0.101 4.101 26 H 0.068 0.932 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.024 0.976 36 H 0.082 0.918 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.260 0.740 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.644 13.823 -5.760 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.293 6.293 4 C 0.003 3.997 5 H 0.123 0.877 6 C -0.228 4.228 7 C -0.019 4.019 8 H 0.111 0.889 9 N -0.239 5.239 10 C -0.123 4.123 11 C -0.086 4.086 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.557 4.557 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.093 4.093 23 C -0.163 4.163 24 C -0.176 4.176 25 C -0.138 4.138 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.573 14.074 -5.333 18.393 hybrid contribution 0.560 -1.374 -0.476 1.558 sum -10.013 12.700 -5.810 17.185 Atomic orbital electron populations 1.21724 0.94082 1.02071 1.02686 1.22497 0.95219 0.84279 1.00351 1.87858 1.20989 1.25924 1.94564 1.24210 0.80831 0.98741 0.95967 0.87670 1.24074 0.99842 1.01006 0.97869 1.22354 0.87693 0.97863 0.93978 0.88901 1.62101 1.12624 1.18978 1.30216 1.22358 0.98031 1.00809 0.91107 1.22767 1.00041 0.86850 0.98928 1.21714 0.94212 0.98521 1.00138 1.19052 0.97011 0.89520 0.95846 1.21202 0.93270 0.99474 1.41711 0.92750 1.25017 0.96214 0.97358 0.95830 1.69957 1.25693 1.12229 1.45747 0.86668 0.84089 0.78407 0.78904 1.20206 1.21314 1.20281 1.22870 0.96064 0.95397 0.95014 1.22737 1.02608 0.96309 0.94662 1.22820 0.99233 0.97202 0.98296 1.22427 0.97801 0.95798 0.97809 0.91271 0.92033 0.92191 0.93115 0.93593 0.91416 0.89366 0.92084 0.90419 0.95751 0.90027 0.95195 0.93383 0.92551 0.96687 0.97003 0.93005 0.90313 0.89677 0.90323 0.91884 0.91931 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.05 0.67 6.50 37.16 0.24 0.91 16 3 O -0.37 -5.23 9.66 -35.23 -0.34 -5.57 16 4 C 0.06 0.84 3.37 -26.29 -0.09 0.75 16 5 H 0.11 1.66 4.52 -51.93 -0.23 1.43 16 6 C -0.19 -2.46 6.96 -25.75 -0.18 -2.64 16 7 C 0.09 1.19 4.00 -67.17 -0.27 0.92 16 8 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 9 N -0.52 -7.68 4.57 -234.23 -1.07 -8.75 16 10 C 0.02 0.34 8.97 60.06 0.54 0.88 16 11 C 0.04 0.70 2.85 -3.82 -0.01 0.69 16 12 C -0.11 -2.23 4.93 -26.73 -0.13 -2.36 16 13 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 14 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 C -0.09 -1.21 0.70 -154.61 -0.11 -1.32 16 23 C -0.13 -1.69 6.24 -26.28 -0.16 -1.85 16 24 C -0.14 -1.55 8.08 -25.75 -0.21 -1.76 16 25 C -0.10 -1.16 7.47 -26.28 -0.20 -1.35 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.93 6.69 -51.93 -0.35 0.58 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.08 1.11 6.47 -51.93 -0.34 0.78 16 35 H 0.02 0.33 7.34 -51.93 -0.38 -0.06 16 36 H 0.08 1.43 4.23 -51.93 -0.22 1.21 16 37 H 0.03 0.53 6.09 -51.93 -0.32 0.22 16 38 H 0.05 0.98 6.48 -51.93 -0.34 0.64 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.28 7.11 -51.93 -0.37 0.91 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.05 7.84 -51.93 -0.41 0.65 16 LS Contribution 363.18 15.07 5.47 5.47 Total: -1.00 -29.60 363.18 -9.79 -39.39 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -8.83 Total: 0.26 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -0.74 Total: -21.29 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.33 Total: -34.98 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.34 Total: -5.57 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.60 -9.79 -39.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120907534.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.675 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds