Wall clock time and date at job start Tue Mar 31 2020 06:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42902 * 109.47014 * 2 1 4 4 C 1.42900 * 114.00010 * 179.97438 * 3 2 1 5 5 H 1.09000 * 112.88467 * 21.83979 * 4 3 2 6 6 C 1.53948 * 113.66103 * 250.49413 * 4 3 2 7 7 C 1.53957 * 87.29336 * 220.70067 * 6 4 3 8 8 H 1.08995 * 113.66140 * 139.30303 * 7 6 4 9 9 N 1.46897 * 113.66187 * 270.26369 * 7 6 4 10 10 C 1.46896 * 110.99975 * 183.46357 * 9 7 6 11 11 C 1.46901 * 111.00338 * 307.41662 * 9 7 6 12 12 C 1.53000 * 109.47680 * 169.99996 * 11 9 7 13 13 C 1.52997 * 109.47333 * 179.97438 * 12 11 9 14 14 C 1.50695 * 109.47219 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00221 * 180.02562 * 14 13 12 17 17 N 1.31518 * 120.00223 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 120.00058 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.46941 * 90.00009 * 18 16 14 20 20 H 1.48495 * 109.47184 * 210.00172 * 18 16 14 21 21 H 1.48500 * 109.46768 * 330.00534 * 18 16 14 22 22 C 1.52903 * 113.74772 * 153.26444 * 4 3 2 23 23 C 1.52908 * 121.13930 * 265.10868 * 22 4 3 24 24 C 1.53957 * 86.78415 * 100.81210 * 23 22 4 25 25 C 1.52917 * 121.13321 * 13.66716 * 22 4 3 26 26 H 1.08995 * 109.47538 * 60.00286 * 1 2 3 27 27 H 1.09003 * 109.46808 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47516 * 299.99820 * 1 2 3 29 29 H 1.09002 * 109.47516 * 240.00180 * 2 1 3 30 30 H 1.09005 * 109.47079 * 120.00007 * 2 1 3 31 31 H 1.09001 * 113.57979 * 106.10437 * 6 4 3 32 32 H 1.08995 * 113.58105 * 335.30141 * 6 4 3 33 33 H 1.09000 * 109.47296 * 179.14891 * 10 9 7 34 34 H 1.08997 * 109.47334 * 59.15195 * 10 9 7 35 35 H 1.09004 * 109.47308 * 299.15039 * 10 9 7 36 36 H 1.09008 * 109.47215 * 290.00335 * 11 9 7 37 37 H 1.09004 * 109.47006 * 49.99825 * 11 9 7 38 38 H 1.08994 * 109.46682 * 300.00125 * 12 11 9 39 39 H 1.09000 * 109.46561 * 59.99774 * 12 11 9 40 40 H 1.08995 * 109.47244 * 300.00297 * 13 12 11 41 41 H 1.09004 * 109.47009 * 60.00040 * 13 12 11 42 42 H 0.96999 * 120.00334 * 180.02562 * 17 16 14 43 43 H 1.09000 * 113.66431 * 215.27882 * 23 22 4 44 44 H 1.08997 * 113.66000 * 346.34233 * 23 22 4 45 45 H 1.08999 * 113.57892 * 270.13426 * 24 23 22 46 46 H 1.08999 * 113.65330 * 139.35109 * 24 23 22 47 47 H 1.08999 * 113.65979 * 13.65159 * 25 22 4 48 48 H 1.08996 * 113.66597 * 144.62087 * 25 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9271 0.5644 -0.3726 6 6 4.0090 1.9785 1.3299 7 6 4.9842 2.8248 0.4915 8 1 5.1397 3.8299 0.8837 9 7 6.2415 2.1345 0.1745 10 6 7.1593 3.0203 -0.5541 11 6 6.8738 1.6070 1.3910 12 6 8.0358 0.6894 1.0052 13 6 8.6946 0.1406 2.2723 14 6 9.8387 -0.7636 1.8923 15 1 10.0728 -0.9299 0.8512 16 6 10.5866 -1.3787 2.8738 17 7 11.5854 -2.1674 2.5421 18 14 10.1823 -1.0906 4.6746 19 1 9.2024 -2.1088 5.1309 20 1 11.4226 -1.1994 5.4840 21 1 9.6004 0.2656 4.8404 22 6 3.9462 2.7547 -0.6290 23 6 4.3645 2.8073 -2.0988 24 6 2.9961 3.4564 -2.3752 25 6 3.0050 3.9269 -0.9094 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.5000 1.2065 1.9223 32 1 3.3033 2.5732 1.9099 33 1 8.0878 2.4891 -0.7629 34 1 7.3729 3.9004 0.0525 35 1 6.6982 3.3289 -1.4924 36 1 7.2488 2.4344 1.9936 37 1 6.1401 1.0420 1.9661 38 1 7.6608 -0.1378 0.4027 39 1 8.7693 1.2545 0.4302 40 1 9.0696 0.9681 2.8745 41 1 7.9612 -0.4243 2.8477 42 1 12.1114 -2.6005 3.2326 43 1 5.2092 3.4692 -2.2899 44 1 4.4828 1.8246 -2.5554 45 1 2.2087 2.7361 -2.5972 46 1 3.0371 4.2733 -3.0956 47 1 2.0372 3.8385 -0.4157 48 1 3.4672 4.9034 -0.7646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120907668.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:22 Heat of formation + Delta-G solvation = -5.496574 kcal Electronic energy + Delta-G solvation = -23070.310016 eV Core-core repulsion = 19933.663462 eV Total energy + Delta-G solvation = -3136.646553 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96295 -37.43668 -36.86763 -34.20904 -33.09454 -31.44563 -30.83845 -27.57445 -25.86024 -25.55729 -24.68711 -23.65551 -22.79418 -21.95764 -20.30834 -19.70674 -18.12922 -17.06495 -16.67331 -15.95491 -15.73849 -15.51838 -15.21005 -14.72724 -14.22341 -14.00259 -13.53610 -13.24483 -12.93810 -12.88280 -12.63317 -12.50565 -12.34532 -12.12819 -11.97759 -11.93434 -11.65362 -11.45336 -11.30985 -11.09491 -11.04856 -10.85924 -10.64727 -10.32135 -10.20109 -10.07159 -9.82439 -9.65288 -9.49162 -9.28860 -9.14607 -8.51993 -8.07632 -6.02471 -4.00080 3.31280 3.38591 3.42384 3.56691 3.93411 4.38183 4.46576 4.48921 4.68635 4.74564 4.75114 4.88851 4.94196 5.08262 5.24591 5.28859 5.31610 5.34449 5.42697 5.46138 5.54673 5.59398 5.64911 5.67593 5.73250 5.75552 5.86451 5.87285 5.88385 5.90944 5.96619 6.04895 6.08091 6.15203 6.27381 6.36594 6.48647 6.56519 6.61438 6.93884 7.22741 7.28383 7.31470 7.40525 7.49096 7.82426 8.57001 9.03191 9.60319 11.11137 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019659 B = 0.003729 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.923038 B = 7506.297234 C = 8305.720287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.376 6.376 4 C 0.100 3.900 5 H 0.096 0.904 6 C -0.157 4.157 7 C 0.070 3.930 8 H 0.054 0.946 9 N -0.521 5.521 10 C 0.020 3.980 11 C 0.049 3.951 12 C -0.096 4.096 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.071 0.929 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.085 4.085 23 C -0.118 4.118 24 C -0.138 4.138 25 C -0.109 4.109 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.020 0.980 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.013 0.987 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.084 0.916 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.048 10.928 -6.979 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.295 6.295 4 C 0.042 3.958 5 H 0.113 0.887 6 C -0.194 4.194 7 C -0.039 4.039 8 H 0.072 0.928 9 N -0.245 5.245 10 C -0.128 4.128 11 C -0.078 4.078 12 C -0.134 4.134 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.086 4.086 23 C -0.155 4.155 24 C -0.175 4.175 25 C -0.147 4.147 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.039 0.961 35 H 0.086 0.914 36 H 0.046 0.954 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.028 0.972 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.137 10.575 -7.203 24.708 hybrid contribution 0.381 0.463 1.603 1.711 sum -20.756 11.038 -5.600 24.166 Atomic orbital electron populations 1.21733 0.94103 1.02040 1.02823 1.22471 0.95210 0.84309 1.00143 1.87889 1.21138 1.25887 1.94575 1.23253 0.80060 0.96982 0.95458 0.88665 1.23707 0.98018 1.00384 0.97336 1.22343 0.89616 0.95919 0.96008 0.92812 1.61884 1.03535 1.35556 1.23504 1.22549 0.97250 0.94904 0.98061 1.22408 0.97321 0.97843 0.90237 1.21468 0.94601 0.97668 0.99673 1.19546 0.95895 0.95986 0.93655 1.21148 1.12760 1.26468 0.95187 0.91044 1.25041 0.94782 0.94735 0.99021 1.69920 1.19941 1.31151 1.33414 0.86775 0.77788 0.79215 0.85479 1.20312 1.21433 1.19096 1.22730 0.95605 0.95774 0.94493 1.22714 0.96668 1.01178 0.94968 1.22820 0.98140 1.00249 0.96330 1.22484 0.99404 0.96260 0.96556 0.92073 0.91331 0.92039 0.93477 0.93399 0.90105 0.89315 0.90445 0.96108 0.91450 0.95419 0.90884 0.92109 0.92805 0.96909 0.97178 0.92793 0.89803 0.91381 0.90285 0.92012 0.90711 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.54 6.51 37.16 0.24 0.79 16 3 O -0.38 -4.41 9.55 -35.23 -0.34 -4.74 16 4 C 0.10 1.20 4.10 -26.29 -0.11 1.09 16 5 H 0.10 1.23 7.90 -51.93 -0.41 0.82 16 6 C -0.16 -1.92 7.35 -25.75 -0.19 -2.11 16 7 C 0.07 0.88 3.20 -67.26 -0.22 0.66 16 8 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 9 N -0.52 -7.41 4.48 -234.34 -1.05 -8.46 16 10 C 0.02 0.27 9.23 60.06 0.55 0.82 16 11 C 0.05 0.80 4.80 -3.82 -0.02 0.78 16 12 C -0.10 -1.92 5.09 -26.73 -0.14 -2.06 16 13 C -0.01 -0.31 4.04 -27.89 -0.11 -0.42 16 14 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 16 15 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 18 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 22 C -0.09 -0.96 0.97 -154.71 -0.15 -1.11 16 23 C -0.12 -1.26 7.00 -26.28 -0.18 -1.44 16 24 C -0.14 -1.32 8.08 -25.74 -0.21 -1.53 16 25 C -0.11 -1.10 7.56 -26.28 -0.20 -1.30 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 1.05 5.81 -51.93 -0.30 0.75 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.08 1.10 6.27 -51.93 -0.33 0.77 16 34 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.77 5.26 -51.93 -0.27 0.50 16 36 H 0.03 0.46 8.12 -51.92 -0.42 0.04 16 37 H 0.07 1.18 5.65 -51.93 -0.29 0.88 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.05 1.08 6.46 -51.93 -0.34 0.74 16 40 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 41 H 0.01 0.24 7.57 -51.93 -0.39 -0.16 16 42 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 43 H 0.08 0.87 5.89 -51.93 -0.31 0.56 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.80 7.65 -51.93 -0.40 0.40 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -30.41 365.44 -9.46 -39.87 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.91 Total: -1.91 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -0.77 Total: -20.10 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.28 Total: -35.92 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.34 Total: -4.74 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.41 -9.46 -39.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120907668.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.369 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds