Wall clock time and date at job start Tue Mar 31 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42904 * 109.46976 * 2 1 4 4 C 1.42902 * 114.00068 * 179.97438 * 3 2 1 5 5 H 1.09007 * 112.88174 * 338.15971 * 4 3 2 6 6 C 1.53941 * 113.66080 * 109.50476 * 4 3 2 7 7 C 1.53947 * 87.29429 * 139.21069 * 6 4 3 8 8 H 1.08993 * 113.66882 * 89.74046 * 7 6 4 9 9 N 1.46911 * 113.66046 * 220.70243 * 7 6 4 10 10 C 1.46900 * 110.99921 * 302.16490 * 9 7 6 11 11 C 1.46894 * 110.99825 * 178.20951 * 9 7 6 12 12 C 1.53007 * 109.47050 * 189.99856 * 11 9 7 13 13 C 1.52997 * 109.47006 * 180.02562 * 12 11 9 14 14 C 1.50700 * 109.46663 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00140 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99826 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00204 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00139 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47071 * 89.99857 * 18 16 14 20 20 H 1.48500 * 109.47183 * 210.00064 * 18 16 14 21 21 H 1.48508 * 109.46735 * 329.99996 * 18 16 14 22 22 C 1.52904 * 86.78213 * 335.26253 * 7 6 4 23 23 C 1.52906 * 121.13966 * 259.18598 * 22 7 6 24 24 C 1.53953 * 86.78161 * 209.37807 * 23 22 7 25 25 C 1.52912 * 121.13782 * 150.61881 * 22 7 6 26 26 H 1.08996 * 109.47535 * 300.00338 * 1 2 3 27 27 H 1.09004 * 109.46949 * 60.00103 * 1 2 3 28 28 H 1.09002 * 109.47078 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47071 * 239.99864 * 2 1 3 30 30 H 1.08998 * 109.46543 * 119.99801 * 2 1 3 31 31 H 1.08994 * 113.58512 * 24.60379 * 6 4 3 32 32 H 1.09006 * 113.57888 * 253.80792 * 6 4 3 33 33 H 1.09005 * 109.46973 * 54.45508 * 10 9 7 34 34 H 1.08996 * 109.47482 * 174.45344 * 10 9 7 35 35 H 1.09001 * 109.47134 * 294.45805 * 10 9 7 36 36 H 1.09002 * 109.47297 * 309.99810 * 11 9 7 37 37 H 1.09001 * 109.46990 * 70.00157 * 11 9 7 38 38 H 1.09002 * 109.47033 * 300.00115 * 12 11 9 39 39 H 1.08999 * 109.46613 * 59.99906 * 12 11 9 40 40 H 1.09002 * 109.47220 * 299.99880 * 13 12 11 41 41 H 1.09001 * 109.47109 * 60.00254 * 13 12 11 42 42 H 0.97001 * 120.00283 * 179.97438 * 17 16 14 43 43 H 1.08999 * 113.66687 * 323.85007 * 23 22 7 44 44 H 1.09005 * 113.66713 * 94.90952 * 23 22 7 45 45 H 1.09002 * 113.57909 * 270.12428 * 24 23 22 46 46 H 1.09004 * 113.65153 * 139.34731 * 24 23 22 47 47 H 1.08995 * 113.66211 * 265.09241 * 25 22 7 48 48 H 1.08997 * 113.66050 * 36.06178 * 25 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.9269 0.5645 0.3745 6 6 4.0101 1.9781 -1.3283 7 6 4.9830 2.8265 -0.4895 8 1 5.9163 2.3159 -0.2525 9 7 5.1914 4.1809 -1.0189 10 6 5.6961 4.1353 -2.3977 11 6 6.0938 4.9515 -0.1531 12 6 6.0914 6.4178 -0.5903 13 6 7.0319 7.2202 0.3110 14 6 7.0290 8.6645 -0.1193 15 1 6.4179 8.9785 -0.9525 16 6 7.8074 9.5848 0.5502 17 7 7.8053 10.8451 0.1745 18 14 8.8649 9.0416 1.9911 19 1 10.2057 8.6381 1.4966 20 1 9.0089 10.1655 2.9509 21 1 8.2207 7.8892 2.6712 22 6 3.9436 2.7561 0.6297 23 6 3.0004 3.9271 0.9077 24 6 2.9903 3.4580 2.3740 25 6 4.3599 2.8105 2.1001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8932 -0.5138 0.8900 31 1 3.3044 2.5712 -1.9100 32 1 4.5030 1.2062 -1.9194 33 1 5.0239 3.5352 -3.0111 34 1 5.7482 5.1472 -2.7993 35 1 6.6908 3.6895 -2.4059 36 1 5.7548 4.8800 0.8804 37 1 7.1041 4.5503 -0.2327 38 1 6.4304 6.4893 -1.6238 39 1 5.0811 6.8189 -0.5108 40 1 6.6933 7.1488 1.3447 41 1 8.0421 6.8189 0.2310 42 1 8.3526 11.4927 0.6457 43 1 3.4619 4.9042 0.7642 44 1 2.0333 3.8371 0.4129 45 1 2.2035 2.7369 2.5956 46 1 3.0304 4.2748 3.0947 47 1 4.4788 1.8284 2.5577 48 1 5.2044 3.4725 2.2913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120907825.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:39:28 Heat of formation + Delta-G solvation = -10.548052 kcal Electronic energy + Delta-G solvation = -23126.496579 eV Core-core repulsion = 19989.630977 eV Total energy + Delta-G solvation = -3136.865602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.90834 -37.54694 -36.60083 -34.43942 -33.08532 -31.42445 -30.82890 -27.41875 -26.10651 -25.64699 -24.38361 -23.46988 -22.90428 -21.56558 -20.42863 -19.87540 -18.05991 -17.04779 -16.63970 -16.12260 -15.65925 -15.63838 -15.11025 -14.52743 -14.16233 -13.92686 -13.70632 -13.25242 -12.93051 -12.82533 -12.71483 -12.51494 -12.20376 -12.04453 -11.86052 -11.83799 -11.57376 -11.50611 -11.39707 -11.09614 -11.06074 -10.93215 -10.70606 -10.27814 -10.12320 -9.90663 -9.84759 -9.59466 -9.48142 -9.37833 -9.11630 -8.49669 -8.06250 -6.00056 -3.97383 3.32850 3.40172 3.43055 3.44228 4.20279 4.42541 4.45313 4.48728 4.58784 4.63411 4.81315 4.85829 4.94418 5.00881 5.10021 5.20429 5.33358 5.34729 5.42995 5.47075 5.55252 5.61230 5.62117 5.65607 5.74688 5.78369 5.84462 5.91034 5.94085 6.00126 6.04160 6.10931 6.17057 6.27268 6.35999 6.51354 6.60228 6.61686 6.71527 6.96689 7.14401 7.32646 7.34901 7.44704 7.52157 7.85144 8.59803 9.05973 9.62835 11.13598 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.003524 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.532744 B = 7944.321218 C = 8353.116089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.088 3.912 5 H 0.084 0.916 6 C -0.142 4.142 7 C 0.067 3.933 8 H 0.062 0.938 9 N -0.521 5.521 10 C 0.024 3.976 11 C 0.053 3.947 12 C -0.097 4.097 13 C -0.013 4.013 14 C -0.517 4.517 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.085 4.085 23 C -0.091 4.091 24 C -0.140 4.140 25 C -0.131 4.131 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.019 0.981 36 H 0.070 0.930 37 H 0.025 0.975 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.007 0.993 42 H 0.262 0.738 43 H 0.095 0.905 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.687 -24.315 0.329 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.029 3.971 5 H 0.101 0.899 6 C -0.180 4.180 7 C -0.042 4.042 8 H 0.080 0.920 9 N -0.245 5.245 10 C -0.124 4.124 11 C -0.074 4.074 12 C -0.134 4.134 13 C -0.051 4.051 14 C -0.555 4.555 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.178 4.178 25 C -0.168 4.168 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.038 0.962 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.033 0.967 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.079 0.921 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.192 -23.745 0.359 26.253 hybrid contribution 1.751 -0.864 0.735 2.086 sum -9.441 -24.609 1.094 26.381 Atomic orbital electron populations 1.21736 0.93895 1.01992 1.03212 1.22472 0.95547 0.84438 0.99666 1.87986 1.20343 1.25506 1.94517 1.23189 0.81065 0.96496 0.96327 0.89865 1.23517 0.98741 0.98925 0.96835 1.22624 0.95653 0.89884 0.96054 0.92014 1.62143 1.48163 1.11901 1.02269 1.22377 0.97383 1.02609 0.90038 1.22357 0.92964 0.95415 0.96712 1.21463 1.00928 0.91224 0.99827 1.19546 0.94200 0.96001 0.95313 1.21154 1.26522 0.90963 1.16818 0.91032 1.25041 0.96610 0.94811 0.97133 1.69920 1.40981 1.02074 1.41483 0.86780 0.81040 0.78454 0.83011 1.20435 1.21438 1.19016 1.22773 0.96584 0.95910 0.93322 1.22313 0.98749 0.97246 0.94496 1.22825 0.96872 1.00248 0.97821 1.22829 0.98158 1.00699 0.95125 0.91854 0.91823 0.91390 0.93660 0.93716 0.88285 0.91788 0.91989 0.90606 0.96197 0.91178 0.95649 0.92907 0.92004 0.96719 0.97446 0.92819 0.88681 0.91138 0.90648 0.91698 0.92122 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.16 0.38 -0.70 16 2 C 0.06 0.46 6.51 37.16 0.24 0.70 16 3 O -0.36 -4.06 9.54 -35.23 -0.34 -4.40 16 4 C 0.09 0.93 4.17 -26.29 -0.11 0.82 16 5 H 0.08 0.76 7.90 -51.93 -0.41 0.35 16 6 C -0.14 -1.54 6.39 -25.76 -0.16 -1.71 16 7 C 0.07 0.83 3.06 -67.26 -0.21 0.62 16 8 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 9 N -0.52 -7.54 3.97 -234.34 -0.93 -8.47 16 10 C 0.02 0.32 9.14 60.06 0.55 0.87 16 11 C 0.05 0.88 4.55 -3.82 -0.02 0.86 16 12 C -0.10 -1.95 5.08 -26.73 -0.14 -2.09 16 13 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.40 13.96 55.43 0.77 -27.63 16 18 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 22 C -0.09 -1.02 0.79 -154.72 -0.12 -1.14 16 23 C -0.09 -1.20 7.15 -26.28 -0.19 -1.39 16 24 C -0.14 -1.65 8.08 -25.75 -0.21 -1.86 16 25 C -0.13 -1.51 7.69 -26.28 -0.20 -1.72 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.10 1.20 7.97 -51.93 -0.41 0.79 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.72 6.96 -51.93 -0.36 0.36 16 34 H 0.08 1.09 6.55 -51.93 -0.34 0.75 16 35 H 0.02 0.26 8.13 -51.93 -0.42 -0.17 16 36 H 0.07 1.16 6.18 -51.93 -0.32 0.84 16 37 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16 38 H 0.05 1.07 6.59 -51.93 -0.34 0.73 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 41 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 42 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 43 H 0.09 1.44 7.09 -51.93 -0.37 1.07 16 44 H 0.07 0.97 7.65 -51.93 -0.40 0.57 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.08 1.06 6.96 -51.93 -0.36 0.70 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -30.79 368.48 -9.50 -40.28 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -9.16 Total: -2.09 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.72 Total: -20.68 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.16 Total: -36.10 kcal Atomic # 8 Polarization: -4.06 SS G_CDS: -0.34 Total: -4.40 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.79 -9.50 -40.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120907825.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.734 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds