Wall clock time and date at job start Tue Mar 31 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47103 * 2 1 4 4 O 1.42890 * 109.47172 * 120.00043 * 2 1 3 5 5 C 1.52994 * 109.47156 * 240.00125 * 2 1 3 6 6 C 1.52995 * 109.47366 * 177.39334 * 5 2 1 7 7 H 1.09004 * 108.94371 * 59.59380 * 6 5 2 8 8 C 1.54436 * 109.02154 * 300.72740 * 6 5 2 9 9 C 1.50750 * 109.02851 * 161.99753 * 8 6 5 10 10 C 1.54171 * 112.60961 * 93.01559 * 9 8 6 11 11 C 1.53816 * 111.97097 * 318.49203 * 10 9 8 12 12 C 1.50819 * 111.62085 * 319.03805 * 11 10 9 13 13 N 1.39778 * 109.02746 * 178.46591 * 6 5 2 14 14 C 1.46908 * 110.99553 * 309.71603 * 13 6 5 15 15 C 1.52997 * 109.46888 * 89.09105 * 14 13 6 16 16 C 1.50703 * 115.56354 * 27.82769 * 15 14 13 17 17 H 1.07990 * 120.00085 * 1.15881 * 16 15 14 18 18 C 1.37884 * 119.99927 * 181.15438 * 16 15 14 19 19 N 1.31515 * 120.00027 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47377 * 59.99890 * 20 18 16 22 22 H 1.48496 * 109.46927 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46836 * 300.00259 * 20 18 16 24 24 C 1.52999 * 117.49733 * 173.51787 * 15 14 13 25 25 C 1.52995 * 60.00347 * 107.49120 * 24 15 14 26 26 H 1.08997 * 109.47176 * 300.00268 * 1 2 3 27 27 H 1.08997 * 109.47154 * 59.99830 * 1 2 3 28 28 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 29 29 H 0.96712 * 114.00303 * 304.91155 * 4 2 1 30 30 H 1.09003 * 109.47131 * 57.39268 * 5 2 1 31 31 H 1.09004 * 109.47403 * 297.39625 * 5 2 1 32 32 H 1.09000 * 109.54311 * 281.86121 * 8 6 5 33 33 H 1.08997 * 109.54683 * 42.13134 * 8 6 5 34 34 H 1.08996 * 108.85542 * 213.82276 * 9 8 6 35 35 H 1.09000 * 108.85507 * 332.20987 * 9 8 6 36 36 H 1.09006 * 108.98071 * 79.12896 * 10 9 8 37 37 H 1.09003 * 108.98551 * 197.84837 * 10 9 8 38 38 H 1.08992 * 109.05375 * 79.59246 * 11 10 9 39 39 H 1.09008 * 109.05158 * 198.56466 * 11 10 9 40 40 H 1.08994 * 109.74919 * 335.41915 * 12 11 10 41 41 H 1.09004 * 109.74497 * 214.69924 * 12 11 10 42 42 H 1.09003 * 109.46944 * 329.09268 * 14 13 6 43 43 H 1.09000 * 109.47129 * 209.08981 * 14 13 6 44 44 H 0.96996 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.09003 * 117.50049 * 359.97438 * 24 15 14 46 46 H 1.09007 * 117.50069 * 214.98130 * 24 15 14 47 47 H 1.08998 * 117.50172 * 107.48752 * 25 24 15 48 48 H 1.08998 * 117.49981 * 252.49518 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.0400 -0.7212 -1.2492 6 6 3.5685 -0.6647 -1.2825 7 1 3.9601 -1.1464 -0.3865 8 6 4.0174 0.8130 -1.2964 9 6 5.4663 0.8904 -0.8875 10 6 6.4251 0.8637 -2.0945 11 6 5.9838 -0.1567 -3.1575 12 6 5.4948 -1.4375 -2.5291 13 7 4.0257 -1.3559 -2.4081 14 6 3.4158 -2.6898 -2.4903 15 6 2.1055 -2.6038 -3.2757 16 6 2.0299 -1.4967 -4.2953 17 1 2.8752 -0.8413 -4.4444 18 6 0.8816 -1.3207 -5.0380 19 7 -0.1479 -2.1186 -4.8561 20 14 0.7882 0.0512 -6.3023 21 1 1.8493 -0.1432 -7.3229 22 1 -0.5427 0.0278 -6.9606 23 1 0.9838 1.3598 -5.6281 24 6 1.3912 -3.9165 -3.6038 25 6 0.8161 -2.9774 -2.5416 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6608 -0.3159 1.9961 30 1 1.6390 -0.2350 -2.1386 31 1 1.7153 -1.7615 -1.2262 32 1 3.8996 1.2204 -2.3005 33 1 3.4096 1.3853 -0.5957 34 1 5.6263 1.8137 -0.3308 35 1 5.6945 0.0456 -0.2376 36 1 6.4546 1.8555 -2.5459 37 1 7.4252 0.6040 -1.7473 38 1 5.1810 0.2759 -3.7544 39 1 6.8293 -0.3810 -3.8080 40 1 5.9396 -1.5563 -1.5412 41 1 5.7659 -2.2842 -3.1599 42 1 3.2133 -3.0593 -1.4850 43 1 4.0991 -3.3712 -2.9972 44 1 -0.9558 -1.9945 -5.3783 45 1 1.8549 -4.8413 -3.2606 46 1 0.8666 -3.9793 -4.5572 47 1 -0.0868 -2.4224 -2.7962 48 1 0.9010 -3.2845 -1.4992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124342948.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:08 Heat of formation + Delta-G solvation = -9.166887 kcal Electronic energy + Delta-G solvation = -25039.752408 eV Core-core repulsion = 21902.946698 eV Total energy + Delta-G solvation = -3136.805710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.67000 -36.94127 -36.47205 -33.76216 -32.64294 -31.33906 -30.51391 -27.45363 -26.67793 -25.36601 -24.04817 -23.02943 -21.34684 -20.40310 -19.18152 -19.04984 -18.80072 -16.85211 -16.05873 -15.23396 -15.06129 -14.77714 -14.41290 -14.22225 -13.94338 -13.54967 -13.36254 -12.91809 -12.48563 -12.43082 -12.13769 -12.00197 -11.65739 -11.52500 -11.41430 -11.03340 -10.98365 -10.68638 -10.67667 -10.53012 -10.33282 -10.21942 -10.09179 -9.93088 -9.86303 -9.69782 -9.67464 -9.33529 -9.23050 -8.54011 -8.11453 -7.83784 -7.17015 -5.78331 -3.77784 3.38236 3.43353 3.46682 4.52456 4.58680 4.74647 5.13307 5.15655 5.23105 5.28246 5.39480 5.47038 5.54781 5.65143 5.69313 5.88579 5.91165 6.00009 6.04711 6.07474 6.13612 6.18386 6.25168 6.32530 6.39819 6.45313 6.46603 6.50713 6.53056 6.54020 6.61481 6.69752 6.77716 6.86221 6.91001 7.12780 7.19986 7.33677 7.40386 7.47151 7.81210 8.00232 8.11577 8.24742 8.33896 8.38394 8.79120 9.23510 9.74647 11.18186 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.012866 B = 0.008318 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.751733 B = 3365.402236 C = 4115.982096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.096 3.904 3 H 0.048 0.952 4 O -0.568 6.568 5 C -0.126 4.126 6 C 0.126 3.874 7 H 0.016 0.984 8 C -0.118 4.118 9 C -0.116 4.116 10 C -0.114 4.114 11 C -0.118 4.118 12 C 0.069 3.931 13 N -0.528 5.528 14 C 0.104 3.896 15 C 0.031 3.969 16 C -0.434 4.434 17 H 0.075 0.925 18 C 0.049 3.951 19 N -0.888 5.888 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.279 1.279 24 C -0.197 4.197 25 C -0.190 4.190 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.363 0.637 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.049 0.951 38 H 0.081 0.919 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.051 0.949 44 H 0.254 0.746 45 H 0.036 0.964 46 H 0.106 0.894 47 H 0.112 0.888 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 4.983 8.673 12.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.037 3.963 3 H 0.066 0.934 4 O -0.372 6.372 5 C -0.163 4.163 6 C 0.016 3.984 7 H 0.033 0.967 8 C -0.155 4.155 9 C -0.154 4.154 10 C -0.152 4.152 11 C -0.156 4.156 12 C -0.058 4.058 13 N -0.251 5.251 14 C -0.023 4.023 15 C 0.030 3.970 16 C -0.472 4.472 17 H 0.093 0.907 18 C -0.151 4.151 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.205 1.205 24 C -0.236 4.236 25 C -0.228 4.228 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.209 0.791 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.124 0.876 47 H 0.130 0.870 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.919 4.881 7.766 11.489 hybrid contribution -0.321 0.597 0.423 0.798 sum 6.598 5.477 8.188 11.857 Atomic orbital electron populations 1.22465 0.96993 1.02892 1.01570 1.22145 0.92416 0.95214 0.86483 0.93390 1.86604 1.72995 1.61763 1.15854 1.22430 0.94384 1.04647 0.94860 1.20201 0.95406 0.92922 0.89894 0.96674 1.21635 0.94664 0.97118 1.02128 1.21380 0.95799 1.00734 0.97448 1.21901 0.97973 0.99127 0.96179 1.21429 1.00784 0.95636 0.97749 1.21787 0.88008 0.97507 0.98539 1.58556 1.05853 1.18612 1.42039 1.21690 0.96502 0.87380 0.96729 1.19068 0.86918 0.94335 0.96643 1.20626 0.99095 1.11739 1.15742 0.90669 1.25048 0.96246 0.96339 0.97418 1.70017 1.04222 1.37687 1.40895 0.86718 0.76653 0.82907 0.81977 1.20610 1.21899 1.20526 1.22899 1.07018 0.92044 1.01600 1.22957 1.03061 1.05473 0.91271 0.93598 0.91352 0.91720 0.79148 0.87832 0.88009 0.90758 0.92022 0.93279 0.92808 0.92782 0.93215 0.90002 0.92836 0.95417 0.91520 0.96127 0.93067 0.93583 0.94542 0.87577 0.87008 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.49 37.16 0.35 -2.36 16 2 C 0.10 1.52 3.37 -26.73 -0.09 1.43 16 3 H 0.05 0.71 5.91 -51.93 -0.31 0.41 16 4 O -0.57 -8.70 12.75 -35.23 -0.45 -9.15 16 5 C -0.13 -2.42 2.75 -26.74 -0.07 -2.49 16 6 C 0.13 2.27 1.31 -70.63 -0.09 2.18 16 7 H 0.02 0.30 7.11 -51.93 -0.37 -0.07 16 8 C -0.12 -1.86 4.93 -27.11 -0.13 -2.00 16 9 C -0.12 -1.60 5.31 -27.25 -0.14 -1.75 16 10 C -0.11 -1.49 5.91 -25.69 -0.15 -1.65 16 11 C -0.12 -1.75 5.41 -27.40 -0.15 -1.90 16 12 C 0.07 1.12 5.35 -4.52 -0.02 1.10 16 13 N -0.53 -9.98 2.33 -231.66 -0.54 -10.52 16 14 C 0.10 2.16 4.92 -3.82 -0.02 2.14 16 15 C 0.03 0.74 1.37 -155.66 -0.21 0.53 16 16 C -0.43 -11.16 7.25 -34.44 -0.25 -11.41 16 17 H 0.08 1.96 7.03 -52.49 -0.37 1.59 16 18 C 0.05 1.28 5.28 -17.82 -0.09 1.19 16 19 N -0.89 -24.21 8.59 55.43 0.48 -23.74 16 20 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.20 -4.87 9.39 -26.73 -0.25 -5.12 16 25 C -0.19 -4.57 7.10 -26.73 -0.19 -4.76 16 26 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.36 3.87 9.03 45.56 0.41 4.28 16 30 H 0.10 2.28 6.78 -51.93 -0.35 1.93 16 31 H 0.10 2.17 2.81 -51.93 -0.15 2.02 16 32 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 33 H 0.06 0.92 5.61 -51.93 -0.29 0.63 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.78 6.58 -51.93 -0.34 0.44 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.40 7.26 -51.93 -0.38 1.02 16 39 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.03 0.44 6.66 -51.93 -0.35 0.09 16 41 H 0.07 1.07 7.28 -51.93 -0.38 0.69 16 42 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 43 H 0.05 1.03 7.18 -51.93 -0.37 0.66 16 44 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 45 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.11 2.90 6.38 -51.93 -0.33 2.57 16 47 H 0.11 2.97 6.18 -51.93 -0.32 2.65 16 48 H 0.04 0.87 7.13 -51.93 -0.37 0.50 16 LS Contribution 340.08 15.07 5.12 5.12 Total: -1.00 -27.22 340.08 -9.44 -36.65 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -7.51 Total: 10.50 kcal Atomic # 6 Polarization: -23.34 SS G_CDS: -1.52 Total: -24.86 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: -0.06 Total: -34.26 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.45 Total: -9.15 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.22 -9.44 -36.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124342948.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.486 kcal (2) G-P(sol) polarization free energy of solvation -27.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds