Wall clock time and date at job start Tue Mar 31 2020 05:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47060 * 2 1 4 4 O 1.42898 * 109.46930 * 240.00270 * 2 1 3 5 5 C 1.52998 * 109.47064 * 120.00161 * 2 1 3 6 6 C 1.53007 * 109.46881 * 186.33009 * 5 2 1 7 7 H 1.09000 * 108.77780 * 55.68305 * 6 5 2 8 8 C 1.50444 * 108.80983 * 174.08536 * 6 5 2 9 9 C 1.54302 * 108.49112 * 214.59340 * 8 6 5 10 10 C 1.45878 * 112.19789 * 281.45348 * 9 8 6 11 11 C 1.54318 * 112.17643 * 61.11799 * 10 9 8 12 12 C 1.50438 * 108.66681 * 281.38118 * 11 10 9 13 13 N 1.47995 * 108.81256 * 297.37951 * 6 5 2 14 14 C 1.46895 * 111.00500 * 323.98124 * 13 6 5 15 15 C 1.53011 * 109.46805 * 271.39194 * 14 13 6 16 16 C 1.50699 * 115.54823 * 72.14486 * 15 14 13 17 17 H 1.07998 * 120.00320 * 356.50482 * 16 15 14 18 18 C 1.37879 * 119.99427 * 176.49889 * 16 15 14 19 19 N 1.31514 * 120.00431 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99714 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46813 * 60.00286 * 20 18 16 22 22 H 1.48498 * 109.46895 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47148 * 300.00487 * 20 18 16 24 24 C 1.52995 * 117.49535 * 286.47558 * 15 14 13 25 25 C 1.52996 * 117.49599 * 217.81656 * 15 14 13 26 26 H 1.09000 * 109.46568 * 300.00232 * 1 2 3 27 27 H 1.09000 * 109.47016 * 59.99987 * 1 2 3 28 28 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 29 29 H 0.96708 * 114.00211 * 307.67049 * 4 2 1 30 30 H 1.08995 * 109.47120 * 66.33628 * 5 2 1 31 31 H 1.08993 * 109.47368 * 306.32670 * 5 2 1 32 32 H 1.09000 * 109.62970 * 94.89512 * 8 6 5 33 33 H 1.08994 * 109.80181 * 334.39548 * 8 6 5 34 34 H 1.09005 * 108.93963 * 160.75470 * 9 8 6 35 35 H 1.09003 * 108.93933 * 42.15597 * 9 8 6 36 36 H 1.09004 * 108.93889 * 300.42476 * 10 9 8 37 37 H 1.09006 * 108.87115 * 181.76509 * 10 9 8 38 38 H 1.08996 * 109.63678 * 41.19090 * 11 10 9 39 39 H 1.09002 * 109.63160 * 161.57966 * 11 10 9 40 40 H 1.08999 * 108.81395 * 214.69794 * 12 11 10 41 41 H 1.09002 * 108.81436 * 332.96381 * 12 11 10 42 42 H 1.09008 * 109.47186 * 31.38411 * 14 13 6 43 43 H 1.08993 * 109.47955 * 151.39177 * 14 13 6 44 44 H 0.96998 * 120.00249 * 179.97438 * 19 18 16 45 45 H 1.08997 * 117.49977 * 0.02562 * 24 15 14 46 46 H 1.09000 * 117.49662 * 145.02355 * 24 15 14 47 47 H 1.09002 * 117.50018 * 214.97839 * 25 15 14 48 48 H 1.08998 * 117.49905 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5618 -0.5850 1.3312 7 1 3.8210 0.4735 1.3080 8 6 4.0318 -1.1710 2.6347 9 6 5.2361 -0.3468 3.1359 10 6 6.4705 -0.6967 2.4417 11 6 6.3817 -0.4287 0.9246 12 6 5.6099 -1.5489 0.2822 13 7 4.1645 -1.2479 0.1533 14 6 3.4074 -2.4504 -0.2189 15 6 3.9535 -3.6552 0.5500 16 6 3.6274 -3.6897 2.0209 17 1 3.0926 -2.8686 2.4749 18 6 4.0119 -4.7696 2.7871 19 7 4.6636 -5.7693 2.2344 20 14 3.6084 -4.8121 4.6105 21 1 2.1359 -4.7486 4.7932 22 1 4.1263 -6.0714 5.2029 23 1 4.2414 -3.6502 5.2848 24 6 5.3079 -4.2171 0.1133 25 6 4.0234 -4.9927 -0.1896 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6284 -1.5546 -1.2942 30 1 1.7723 -1.7764 1.1943 31 1 1.5872 -0.2771 2.1356 32 1 4.3348 -2.2069 2.4823 33 1 3.2279 -1.1290 3.3696 34 1 5.3676 -0.5256 4.2031 35 1 5.0300 0.7120 2.9792 36 1 6.6793 -1.7544 2.6026 37 1 7.2880 -0.1077 2.8578 38 1 5.8690 0.5170 0.7491 39 1 7.3851 -0.3852 0.5010 40 1 6.0249 -1.7392 -0.7076 41 1 5.7253 -2.4478 0.8878 42 1 2.3552 -2.3083 0.0282 43 1 3.5085 -2.6266 -1.2897 44 1 4.9344 -6.5289 2.7735 45 1 5.8100 -3.7282 -0.7215 46 1 5.9629 -4.6121 0.8898 47 1 3.8340 -5.8976 0.3877 48 1 3.6800 -5.0144 -1.2239 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124343161.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:10 Heat of formation + Delta-G solvation = 28.235296 kcal Electronic energy + Delta-G solvation = -25706.598134 eV Core-core repulsion = 22571.414304 eV Total energy + Delta-G solvation = -3135.183830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.95765 -37.09517 -36.11390 -33.36165 -32.71254 -31.20274 -30.64671 -27.50922 -26.61770 -26.26610 -23.36499 -23.02404 -21.17455 -20.58741 -19.60794 -19.20527 -18.11160 -16.37063 -16.04733 -15.65890 -15.08222 -14.73487 -14.52065 -14.01594 -13.63941 -13.41804 -13.18267 -12.76642 -12.59624 -12.40875 -12.07249 -11.74715 -11.61729 -11.49625 -11.21832 -11.05031 -11.01263 -10.78063 -10.65593 -10.58812 -10.51083 -10.09182 -9.99786 -9.97089 -9.79735 -9.61347 -9.36017 -9.04512 -8.96225 -8.61612 -8.09956 -7.94824 -6.84343 -6.03853 -4.05651 3.20976 3.27036 3.30026 4.28871 4.73155 4.93169 5.00921 5.12924 5.34812 5.44542 5.46447 5.53410 5.65070 5.75946 5.88818 5.90369 5.96654 6.04905 6.12875 6.25776 6.27954 6.32547 6.35234 6.40060 6.46363 6.48565 6.64020 6.68969 6.74196 6.79184 6.83937 6.85038 6.91030 6.94564 7.00489 7.15903 7.20574 7.36983 7.38824 7.60224 7.78264 8.01652 8.16847 8.19896 8.25399 8.31854 8.48440 8.86775 9.41645 10.87859 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014018 B = 0.008564 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.912260 B = 3268.654907 C = 3524.279802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.111 3.889 3 H 0.087 0.913 4 O -0.543 6.543 5 C -0.165 4.165 6 C 0.115 3.885 7 H 0.053 0.947 8 C -0.223 4.223 9 C -0.110 4.110 10 C -0.115 4.115 11 C -0.116 4.116 12 C 0.041 3.959 13 N -0.516 5.516 14 C 0.091 3.909 15 C -0.017 4.017 16 C -0.491 4.491 17 H 0.092 0.908 18 C 0.063 3.937 19 N -0.868 5.868 20 Si 0.881 3.119 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.273 1.273 24 C -0.184 4.184 25 C -0.192 4.192 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.367 0.633 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.178 0.822 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.042 0.958 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.048 0.952 44 H 0.259 0.741 45 H 0.046 0.954 46 H 0.097 0.903 47 H 0.114 0.886 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 8.595 -1.553 9.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.052 3.948 3 H 0.105 0.895 4 O -0.349 6.349 5 C -0.202 4.202 6 C 0.007 3.993 7 H 0.071 0.929 8 C -0.260 4.260 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.153 4.153 12 C -0.085 4.085 13 N -0.239 5.239 14 C -0.036 4.036 15 C -0.018 4.018 16 C -0.527 4.527 17 H 0.110 0.890 18 C -0.140 4.140 19 N -0.504 5.504 20 Si 0.709 3.291 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.222 4.222 25 C -0.231 4.231 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.215 0.785 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.194 0.806 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.115 0.885 47 H 0.131 0.869 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.501 9.310 -1.920 9.829 hybrid contribution -0.400 -1.090 1.908 2.234 sum -2.901 8.219 -0.012 8.716 Atomic orbital electron populations 1.22603 0.97877 1.02233 1.01896 1.21723 0.90915 0.96475 0.85673 0.89509 1.86780 1.70102 1.33686 1.44345 1.22818 0.97037 1.02756 0.97622 1.21054 0.91778 0.97060 0.89382 0.92871 1.23968 0.96522 1.09264 0.96211 1.20488 0.96622 0.98815 0.98802 1.20553 0.97292 1.01763 0.95682 1.21391 0.99220 0.99775 0.94949 1.22234 0.87729 0.98727 0.99849 1.62260 1.01461 1.26273 1.33933 1.22050 0.97632 0.87201 0.96730 1.19784 0.96752 0.91218 0.94072 1.21118 1.35372 1.04262 0.91978 0.89046 1.25046 0.95158 0.95474 0.98357 1.70018 1.37583 1.07901 1.34942 0.86803 0.78959 0.77656 0.85720 1.20152 1.21295 1.19802 1.22777 0.92456 1.05853 1.01113 1.22969 1.03035 1.00645 0.96426 0.92186 0.92462 0.92440 0.78482 0.89137 0.92043 0.80609 0.93712 0.93816 0.94250 0.91752 0.93928 0.92110 0.92718 0.93086 0.89589 0.90720 0.93396 0.93005 0.93555 0.88470 0.86852 0.94351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.20 9.47 37.16 0.35 -1.85 16 2 C 0.11 1.57 3.55 -26.73 -0.09 1.47 16 3 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 4 O -0.54 -8.49 10.34 -35.23 -0.36 -8.85 16 5 C -0.16 -2.60 3.75 -26.73 -0.10 -2.70 16 6 C 0.12 2.03 1.67 -68.38 -0.11 1.92 16 7 H 0.05 0.94 6.58 -51.93 -0.34 0.60 16 8 C -0.22 -4.23 3.28 -27.33 -0.09 -4.32 16 9 C -0.11 -1.90 5.30 -29.42 -0.16 -2.06 16 10 C -0.12 -1.97 5.30 -29.41 -0.16 -2.12 16 11 C -0.12 -1.95 5.61 -27.32 -0.15 -2.10 16 12 C 0.04 0.79 3.68 -4.38 -0.02 0.78 16 13 N -0.52 -9.61 3.97 -227.75 -0.90 -10.52 16 14 C 0.09 1.77 3.05 -3.82 -0.01 1.76 16 15 C -0.02 -0.37 1.33 -155.66 -0.21 -0.58 16 16 C -0.49 -11.71 5.72 -34.44 -0.20 -11.91 16 17 H 0.09 2.12 3.57 -52.49 -0.19 1.93 16 18 C 0.06 1.57 5.28 -17.82 -0.09 1.48 16 19 N -0.87 -22.65 8.60 55.43 0.48 -22.17 16 20 Si 0.88 19.85 29.54 -169.99 -5.02 14.83 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 C -0.18 -4.29 6.59 -26.70 -0.18 -4.46 16 25 C -0.19 -4.55 9.31 -26.70 -0.25 -4.79 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.37 5.13 6.81 45.56 0.31 5.44 16 30 H 0.09 1.58 4.81 -51.93 -0.25 1.33 16 31 H 0.06 0.90 7.93 -51.93 -0.41 0.49 16 32 H 0.18 3.86 2.34 -71.84 -0.17 3.69 16 33 H 0.04 0.85 7.38 -51.93 -0.38 0.46 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.63 7.52 -51.93 -0.39 0.24 16 36 H 0.06 1.22 7.53 -51.93 -0.39 0.83 16 37 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.02 7.08 -51.93 -0.37 0.66 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.99 7.34 -51.93 -0.38 0.61 16 41 H 0.09 1.86 2.93 -51.93 -0.15 1.71 16 42 H 0.08 1.37 2.81 -51.92 -0.15 1.22 16 43 H 0.05 0.95 7.83 -51.93 -0.41 0.54 16 44 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 45 H 0.05 1.02 6.67 -51.93 -0.35 0.68 16 46 H 0.10 2.52 6.58 -51.93 -0.34 2.17 16 47 H 0.11 2.98 5.98 -51.93 -0.31 2.67 16 48 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -25.02 321.78 -9.61 -34.63 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: -7.18 Total: 16.72 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: -1.46 Total: -29.49 kcal Atomic # 7 Polarization: -32.26 SS G_CDS: -0.43 Total: -32.69 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.36 Total: -8.85 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -25.02 -9.61 -34.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124343161.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.866 kcal (2) G-P(sol) polarization free energy of solvation -25.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds