Wall clock time and date at job start Tue Mar 31 2020 05:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47170 * 2 1 4 4 O 1.42898 * 109.47030 * 119.99303 * 2 1 3 5 5 C 1.52993 * 109.47373 * 239.99185 * 2 1 3 6 6 C 1.53002 * 109.47299 * 181.94132 * 5 2 1 7 7 H 1.09005 * 109.74154 * 308.27606 * 6 5 2 8 8 C 1.50813 * 109.74396 * 69.00737 * 6 5 2 9 9 C 1.53824 * 111.62184 * 214.69472 * 8 6 5 10 10 C 1.54175 * 111.97107 * 319.03926 * 9 8 6 11 11 C 1.50752 * 112.60746 * 318.48444 * 10 9 8 12 12 C 1.54429 * 109.02410 * 93.01404 * 11 10 9 13 13 N 1.39774 * 111.77490 * 282.59899 * 12 11 10 14 14 C 1.46904 * 111.00072 * 189.13336 * 13 12 11 15 15 C 1.52999 * 109.47670 * 47.52349 * 14 13 12 16 16 C 1.50703 * 115.54624 * 61.75169 * 15 14 13 17 17 H 1.08001 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99822 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99825 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99909 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47042 * 90.00174 * 20 18 16 22 22 H 1.48501 * 109.47201 * 210.00124 * 20 18 16 23 23 H 1.48496 * 109.47404 * 330.00658 * 20 18 16 24 24 C 1.53002 * 117.49985 * 276.08800 * 15 14 13 25 25 C 1.52993 * 117.50172 * 207.42944 * 15 14 13 26 26 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47532 * 300.00760 * 1 2 3 28 28 H 1.09005 * 109.47197 * 60.00867 * 1 2 3 29 29 H 0.96701 * 114.00387 * 60.00270 * 4 2 1 30 30 H 1.08993 * 109.47789 * 301.94436 * 5 2 1 31 31 H 1.09004 * 109.47166 * 61.94881 * 5 2 1 32 32 H 1.09002 * 109.05081 * 335.23719 * 8 6 5 33 33 H 1.08996 * 109.05540 * 94.14360 * 8 6 5 34 34 H 1.09001 * 108.98543 * 198.39840 * 9 8 6 35 35 H 1.08997 * 108.98085 * 79.67725 * 9 8 6 36 36 H 1.08996 * 108.85370 * 197.67536 * 10 9 8 37 37 H 1.08999 * 108.77025 * 79.23447 * 10 9 8 38 38 H 1.09001 * 109.54604 * 333.15813 * 11 10 9 39 39 H 1.08998 * 109.62338 * 212.92527 * 11 10 9 40 40 H 1.09000 * 109.02027 * 162.00553 * 12 11 10 41 41 H 1.09008 * 109.02117 * 43.18887 * 12 11 10 42 42 H 1.09000 * 109.47310 * 167.53208 * 14 13 12 43 43 H 1.09002 * 109.46644 * 287.52439 * 14 13 12 44 44 H 0.97003 * 119.99783 * 179.97438 * 19 18 16 45 45 H 1.08998 * 117.49746 * 359.97438 * 24 15 14 46 46 H 1.08993 * 117.49838 * 145.01542 * 24 15 14 47 47 H 1.09003 * 117.49603 * 214.98464 * 25 15 14 48 48 H 1.08997 * 117.49906 * 359.97172 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.0400 -0.7214 -1.2491 6 6 3.5692 -0.7638 -1.2248 7 1 3.9628 0.2392 -1.0598 8 6 4.0360 -1.6831 -0.1241 9 6 5.3386 -1.1794 0.5208 10 6 6.3285 -0.6347 -0.5282 11 6 6.3880 -1.4902 -1.7680 12 6 5.3913 -0.9368 -2.8098 13 7 4.0740 -1.2929 -2.5073 14 6 3.1687 -0.9485 -3.6118 15 6 3.7677 -1.4348 -4.9330 16 6 3.9710 -2.9238 -5.0453 17 1 3.6980 -3.5697 -4.2238 18 6 4.5047 -3.4618 -6.1971 19 7 4.8367 -2.6754 -7.1976 20 14 4.7561 -5.3075 -6.3366 21 1 3.5352 -5.9316 -6.9070 22 1 5.9141 -5.5837 -7.2243 23 1 5.0185 -5.8745 -4.9895 24 6 4.7902 -0.5283 -5.6212 25 6 3.3829 -0.6764 -6.2048 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 1.7210 -1.5951 1.2331 30 1 1.6486 -1.7385 -1.2666 31 1 1.7055 -0.1879 -2.1388 32 1 3.2614 -1.7448 0.6403 33 1 4.2054 -2.6769 -0.5384 34 1 5.8093 -2.0023 1.0587 35 1 5.0998 -0.3856 1.2286 36 1 7.3227 -0.5888 -0.0838 37 1 6.0221 0.3728 -0.8097 38 1 6.1199 -2.5163 -1.5163 39 1 7.3967 -1.4675 -2.1804 40 1 5.6492 -1.3312 -3.7927 41 1 5.4690 0.1503 -2.8333 42 1 2.2026 -1.4275 -3.4526 43 1 3.0362 0.1328 -3.6492 44 1 5.2125 -3.0539 -8.0079 45 1 5.0358 0.4147 -5.1330 46 1 5.6096 -1.0089 -6.1555 47 1 3.2770 -1.2544 -7.1228 48 1 2.7026 0.1688 -6.1003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124343413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:13 Heat of formation + Delta-G solvation = -10.120241 kcal Electronic energy + Delta-G solvation = -24452.387809 eV Core-core repulsion = 21315.540758 eV Total energy + Delta-G solvation = -3136.847051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81345 -37.68024 -36.28164 -33.82987 -32.48972 -31.32146 -31.07602 -27.60632 -26.90978 -25.52102 -23.69694 -23.40085 -21.40898 -20.69250 -19.92588 -19.00790 -18.66379 -16.43847 -16.02203 -15.69103 -15.55124 -14.98684 -14.59415 -14.21914 -14.19174 -13.62276 -13.36214 -13.12248 -12.96420 -12.55177 -12.45998 -11.99821 -11.84367 -11.67346 -11.44033 -11.17091 -11.06747 -10.97992 -10.82690 -10.73848 -10.51583 -10.26512 -10.14213 -10.11335 -9.93630 -9.83395 -9.74525 -9.34743 -9.12925 -8.74725 -8.18775 -7.96479 -7.23906 -5.89210 -3.92328 3.32523 3.39908 3.44499 4.27312 4.45763 4.51446 4.87958 5.03170 5.12252 5.17499 5.27585 5.32099 5.41923 5.48014 5.59086 5.65203 5.74852 5.82983 5.89148 5.96816 5.99662 6.04919 6.14974 6.15898 6.22132 6.29112 6.35948 6.44985 6.48255 6.53789 6.59916 6.64235 6.68573 6.75864 6.89084 6.94255 6.99182 7.13317 7.32959 7.37749 7.56973 7.75999 8.02446 8.13882 8.26338 8.36033 8.60829 9.05940 9.62231 11.07041 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.005702 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.401936 B = 4909.341764 C = 5373.167578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.103 3.897 3 H 0.093 0.907 4 O -0.553 6.553 5 C -0.156 4.156 6 C 0.104 3.896 7 H 0.035 0.965 8 C -0.135 4.135 9 C -0.108 4.108 10 C -0.120 4.120 11 C -0.117 4.117 12 C 0.072 3.928 13 N -0.531 5.531 14 C 0.106 3.894 15 C 0.021 3.979 16 C -0.453 4.453 17 H 0.065 0.935 18 C 0.054 3.946 19 N -0.884 5.884 20 Si 0.894 3.106 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.274 1.274 24 C -0.192 4.192 25 C -0.190 4.190 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.374 0.626 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.057 0.943 40 H 0.111 0.889 41 H -0.003 1.003 42 H 0.065 0.935 43 H 0.005 0.995 44 H 0.256 0.744 45 H 0.037 0.963 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.917 4.284 13.462 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.044 3.956 3 H 0.111 0.889 4 O -0.361 6.361 5 C -0.194 4.194 6 C -0.003 4.003 7 H 0.053 0.947 8 C -0.173 4.173 9 C -0.146 4.146 10 C -0.157 4.157 11 C -0.155 4.155 12 C -0.057 4.057 13 N -0.255 5.255 14 C -0.020 4.020 15 C 0.020 3.980 16 C -0.490 4.490 17 H 0.084 0.916 18 C -0.147 4.147 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.198 1.198 24 C -0.230 4.230 25 C -0.228 4.228 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.224 0.776 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.015 0.985 42 H 0.084 0.916 43 H 0.024 0.976 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -3.539 4.366 13.444 14.572 hybrid contribution 0.010 -0.432 -0.584 0.726 sum -3.529 3.935 12.860 13.904 Atomic orbital electron populations 1.22497 0.96678 1.02545 1.02446 1.21909 0.92386 0.96566 0.84700 0.88896 1.86604 1.75868 1.28960 1.44661 1.22567 0.96689 1.01874 0.98275 1.21161 0.92523 0.96168 0.90476 0.94708 1.22033 0.97594 0.99659 0.97983 1.21797 0.95803 0.99719 0.97266 1.21463 0.98253 0.99522 0.96472 1.21475 0.98693 1.00434 0.94917 1.21167 0.87984 0.95427 1.01148 1.58761 1.02499 1.62763 1.01448 1.21622 0.95525 0.94697 0.90180 1.19040 0.98584 0.93094 0.87275 1.20567 1.38871 0.89730 0.99866 0.91635 1.25025 0.95844 0.97843 0.95951 1.70021 1.43322 1.33711 1.05300 0.86558 0.77488 0.85812 0.77934 1.20952 1.21501 1.19848 1.22880 0.95243 0.98312 1.06545 1.22875 0.96752 1.00838 1.02366 0.92245 0.92174 0.91590 0.77649 0.90741 0.90361 0.88926 0.91540 0.93161 0.93043 0.93419 0.93133 0.90967 0.92457 0.87128 0.98548 0.91640 0.97649 0.93332 0.94429 0.87255 0.87192 0.94376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 9.53 37.16 0.35 -1.32 16 2 C 0.10 1.12 3.66 -26.74 -0.10 1.02 16 3 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 4 O -0.55 -5.94 10.50 -35.23 -0.37 -6.31 16 5 C -0.16 -2.05 3.46 -26.73 -0.09 -2.14 16 6 C 0.10 1.60 1.89 -68.41 -0.13 1.47 16 7 H 0.04 0.57 6.66 -51.93 -0.35 0.23 16 8 C -0.14 -1.91 4.61 -27.40 -0.13 -2.04 16 9 C -0.11 -1.47 5.91 -25.69 -0.15 -1.62 16 10 C -0.12 -1.75 5.32 -27.24 -0.14 -1.90 16 11 C -0.12 -1.98 5.65 -27.11 -0.15 -2.13 16 12 C 0.07 1.40 3.97 -6.75 -0.03 1.38 16 13 N -0.53 -10.00 3.91 -231.98 -0.91 -10.91 16 14 C 0.11 2.18 3.69 -3.82 -0.01 2.16 16 15 C 0.02 0.50 1.33 -155.66 -0.21 0.29 16 16 C -0.45 -12.03 8.66 -34.44 -0.30 -12.33 16 17 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 18 C 0.05 1.44 5.27 -17.82 -0.09 1.35 16 19 N -0.88 -24.37 8.59 55.43 0.48 -23.90 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.19 -4.70 7.12 -26.70 -0.19 -4.89 16 25 C -0.19 -4.69 9.37 -26.70 -0.25 -4.94 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.37 2.97 8.03 63.71 0.51 3.48 16 30 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 31 H 0.08 1.10 5.94 -51.93 -0.31 0.79 16 32 H 0.09 1.12 3.70 -34.99 -0.13 0.99 16 33 H 0.07 1.07 7.26 -51.93 -0.38 0.69 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.77 6.57 -51.93 -0.34 0.43 16 38 H 0.07 1.28 7.11 -51.93 -0.37 0.91 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.11 2.53 4.56 -51.93 -0.24 2.30 16 41 H 0.00 -0.07 7.45 -51.92 -0.39 -0.45 16 42 H 0.07 1.31 6.64 -51.93 -0.34 0.96 16 43 H 0.01 0.11 7.73 -51.93 -0.40 -0.29 16 44 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.04 0.86 7.79 -51.93 -0.40 0.46 16 46 H 0.11 2.97 6.28 -51.93 -0.33 2.64 16 47 H 0.11 3.00 6.28 -51.93 -0.33 2.67 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -27.58 342.83 -9.84 -37.42 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -7.56 Total: 8.06 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -1.62 Total: -25.65 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: -0.43 Total: -34.81 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.37 Total: -6.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.58 -9.84 -37.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124343413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.299 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds