Wall clock time and date at job start Tue Mar 31 2020 06:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08993 * 109.47409 * 2 1 4 4 C 1.50698 * 109.46905 * 239.99886 * 2 1 3 5 5 H 1.08002 * 120.00111 * 239.99927 * 4 2 1 6 6 C 1.37879 * 120.00162 * 60.00548 * 4 2 1 7 7 N 1.31516 * 119.99758 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00120 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47619 * 59.99471 * 8 6 4 10 10 H 1.48507 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.47094 * 299.99647 * 8 6 4 12 12 N 1.46506 * 109.47019 * 120.00225 * 2 1 3 13 13 C 1.46497 * 120.00026 * 59.99478 * 12 2 1 14 14 C 1.34772 * 119.99482 * 240.00046 * 12 2 1 15 15 O 1.21276 * 120.00644 * 359.97438 * 14 12 2 16 16 C 1.50708 * 119.99813 * 180.02562 * 14 12 2 17 17 C 1.52996 * 109.47139 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.47372 * 55.00021 * 17 16 14 19 19 C 1.52997 * 109.46975 * 294.99649 * 17 16 14 20 20 C 1.53006 * 109.47164 * 180.02562 * 19 17 16 21 21 C 1.52997 * 109.47127 * 59.99836 * 20 19 17 22 22 C 1.53000 * 109.47060 * 300.00449 * 21 20 19 23 23 C 1.52996 * 109.47328 * 60.00126 * 22 21 20 24 24 C 1.52993 * 109.47473 * 60.00001 * 23 22 21 25 25 C 1.52997 * 109.46975 * 180.02562 * 23 22 21 26 26 H 1.09001 * 109.46987 * 300.00019 * 1 2 3 27 27 H 1.09001 * 109.47469 * 60.00033 * 1 2 3 28 28 H 1.09000 * 109.47568 * 179.97438 * 1 2 3 29 29 H 0.96998 * 119.99866 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47134 * 270.00045 * 13 12 2 31 31 H 1.09000 * 109.47109 * 30.00627 * 13 12 2 32 32 H 1.08996 * 109.46787 * 149.99825 * 13 12 2 33 33 H 1.08998 * 109.46828 * 59.99472 * 16 14 12 34 34 H 1.09001 * 109.46724 * 299.99720 * 16 14 12 35 35 H 1.09001 * 109.47375 * 300.00370 * 19 17 16 36 36 H 1.09000 * 109.47140 * 60.00388 * 19 17 16 37 37 H 1.08998 * 109.46505 * 299.99708 * 20 19 17 38 38 H 1.08996 * 109.46884 * 180.02562 * 20 19 17 39 39 H 1.09002 * 109.47153 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.46832 * 60.00321 * 21 20 19 41 41 H 1.09004 * 109.46724 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47194 * 299.99650 * 22 21 20 43 43 H 1.09004 * 109.46998 * 59.99561 * 24 23 22 44 44 H 1.09002 * 109.47722 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46862 * 300.00038 * 24 23 22 46 46 H 1.09001 * 109.47375 * 59.99630 * 25 23 22 47 47 H 1.09002 * 109.47045 * 179.97438 * 25 23 22 48 48 H 1.09000 * 109.47140 * 299.99612 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3212 -1.1204 -4.0079 9 1 1.8257 -2.5203 -4.0077 10 1 1.8259 -0.4206 -5.2205 11 1 3.8063 -1.1210 -4.0081 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4280 14 6 2.7931 -0.0357 2.0833 15 8 3.0865 1.1253 1.8912 16 6 3.2960 -0.7462 3.3135 17 6 4.1463 0.2153 4.1461 18 1 3.5684 1.1124 4.3681 19 6 5.4010 0.5986 3.3589 20 6 6.2518 1.5597 4.1917 21 6 6.6587 0.8781 5.4996 22 6 5.4040 0.4946 6.2868 23 6 4.5533 -0.4664 5.4540 24 6 5.3642 -1.7257 5.1420 25 6 3.2983 -0.8493 6.2409 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7082 1.1609 -3.4844 30 1 0.7375 -2.1443 1.9994 31 1 1.5294 -2.5969 0.4708 32 1 2.4627 -2.5819 1.9863 33 1 3.9016 -1.6024 3.0165 34 1 2.4484 -1.0892 3.9069 35 1 5.9790 -0.2985 3.1369 36 1 5.1111 1.0839 2.4270 37 1 5.6740 2.4569 4.4140 38 1 7.1454 1.8332 3.6307 39 1 7.2644 1.5629 6.0932 40 1 7.2364 -0.0191 5.2773 41 1 5.6939 0.0094 7.2188 42 1 4.8262 1.3918 6.5091 43 1 5.6541 -2.2113 6.0738 44 1 4.7583 -2.4103 4.5483 45 1 6.2581 -1.4526 4.5811 46 1 2.7208 0.0480 6.4629 47 1 2.6921 -1.5337 5.6474 48 1 3.5879 -1.3348 7.1729 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125160215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:49 Heat of formation + Delta-G solvation = -68.658231 kcal Electronic energy + Delta-G solvation = -23868.484433 eV Core-core repulsion = 20729.098985 eV Total energy + Delta-G solvation = -3139.385448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -40.20635 -38.46611 -35.27926 -33.42930 -32.79975 -32.00565 -29.54083 -27.62140 -27.23899 -26.03183 -25.53544 -25.16354 -22.31114 -21.05392 -20.44226 -18.21916 -17.98553 -16.60336 -16.15818 -15.39475 -15.16111 -14.90679 -14.49443 -14.37246 -14.11622 -13.62005 -13.47157 -12.95353 -12.59068 -12.53865 -12.29926 -12.28707 -11.87076 -11.83002 -11.55016 -11.47723 -11.40638 -11.34739 -11.14181 -11.00663 -10.89551 -10.83188 -10.63337 -10.52991 -10.23497 -10.14366 -10.00555 -9.79243 -9.75705 -9.15173 -8.70555 -8.38566 -7.50523 -6.04733 -4.12665 3.28729 3.33949 3.35299 3.51083 4.04706 4.41745 4.66807 4.71613 4.78634 5.13438 5.20400 5.25623 5.29086 5.39133 5.40896 5.49023 5.57606 5.64097 5.66419 5.69651 5.75505 5.82222 5.91509 5.95841 5.96360 6.00485 6.07978 6.08853 6.13285 6.24960 6.28368 6.36888 6.40246 6.42582 6.50110 6.74119 6.78462 6.84067 6.87577 7.11160 7.49427 7.58730 7.75716 8.05839 8.24293 8.61878 8.87084 9.16770 9.53966 11.00443 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.004258 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.444762 B = 6573.613856 C = 6880.734807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.055 4.055 18 H 0.075 0.925 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.105 4.105 23 C -0.061 4.061 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.263 0.737 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.504 -5.091 16.506 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.059 4.059 14 C 0.289 3.711 15 O -0.431 6.431 16 C -0.179 4.179 17 C -0.073 4.073 18 H 0.093 0.907 19 C -0.160 4.160 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.061 4.061 24 C -0.203 4.203 25 C -0.202 4.202 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.548 -4.365 16.230 18.037 hybrid contribution 0.183 -0.671 -0.903 1.140 sum 6.731 -5.036 15.327 17.481 Atomic orbital electron populations 1.22074 0.98379 0.99277 1.00671 1.18891 0.90750 0.94532 0.80095 0.91968 1.21291 1.31760 1.12950 0.90390 0.92394 1.24891 0.94973 0.94985 0.98921 1.69873 1.36327 1.22622 1.23789 0.86572 0.79230 0.79573 0.82087 1.20268 1.21180 1.20271 1.48251 1.49272 1.11520 1.23681 1.21567 0.98641 0.83552 1.02177 1.20485 0.78973 0.87214 0.84385 1.90597 1.58161 1.17282 1.77018 1.21890 1.00621 0.99745 0.95648 1.20849 0.96108 0.97574 0.92815 0.90687 1.21752 0.95142 0.99074 0.99990 1.21493 0.99431 0.98760 0.95676 1.21594 0.97278 1.00255 0.96687 1.21557 0.96312 0.98852 0.97564 1.20548 0.95085 0.95310 0.95137 1.22021 1.00343 0.96872 1.01089 1.21945 0.97322 1.01391 0.99521 0.97128 0.88951 0.95275 0.92677 0.94103 0.90285 0.92896 0.89563 0.89607 0.92687 0.89432 0.92166 0.92527 0.92700 0.91956 0.92454 0.92121 0.93232 0.92533 0.91963 0.92721 0.92296 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 8.97 37.16 0.33 -3.21 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.47 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.53 -14.28 7.99 -34.44 -0.28 -14.55 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 N -0.60 -12.77 2.75 -175.27 -0.48 -13.25 16 13 C 0.08 1.43 9.24 59.85 0.55 1.99 16 14 C 0.50 10.27 7.39 -10.98 -0.08 10.19 16 15 O -0.55 -13.29 13.29 5.56 0.07 -13.21 16 16 C -0.14 -2.05 3.01 -27.88 -0.08 -2.14 16 17 C -0.05 -0.75 1.14 -90.62 -0.10 -0.86 16 18 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 19 C -0.12 -1.79 4.67 -26.73 -0.12 -1.92 16 20 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 21 C -0.12 -1.25 5.65 -26.73 -0.15 -1.40 16 22 C -0.11 -1.07 4.73 -26.73 -0.13 -1.20 16 23 C -0.06 -0.65 0.54 -154.51 -0.08 -0.74 16 24 C -0.15 -1.46 7.43 37.15 0.28 -1.19 16 25 C -0.14 -1.43 8.13 37.16 0.30 -1.13 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 32 H 0.05 0.73 6.44 -51.93 -0.33 0.39 16 33 H 0.09 1.17 5.96 -51.93 -0.31 0.86 16 34 H 0.09 1.12 6.14 -51.93 -0.32 0.80 16 35 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 36 H 0.09 1.62 5.95 -51.93 -0.31 1.31 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 45 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 46 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.57 6.32 -51.93 -0.33 0.25 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -29.95 348.66 -8.00 -37.95 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.45 Total: 1.46 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 0.00 Total: -9.61 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.14 Total: -37.95 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.95 -8.00 -37.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125160215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.710 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds