Wall clock time and date at job start Tue Mar 31 2020 06:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47158 * 2 1 4 4 C 1.50709 * 109.46938 * 240.00575 * 2 1 3 5 5 H 1.08000 * 120.00068 * 240.00129 * 4 2 1 6 6 C 1.37880 * 119.99974 * 59.99749 * 4 2 1 7 7 N 1.31519 * 120.00089 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99973 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46893 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47098 * 120.00235 * 8 6 4 11 11 H 1.48505 * 109.47091 * 240.00539 * 8 6 4 12 12 N 1.46497 * 109.47063 * 120.00823 * 2 1 3 13 13 C 1.46496 * 120.00129 * 59.99902 * 12 2 1 14 14 C 1.34777 * 119.99525 * 239.99409 * 12 2 1 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 12 2 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 12 2 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 12 18 18 H 1.08998 * 109.46700 * 305.00017 * 17 16 14 19 19 C 1.53004 * 109.47137 * 64.99916 * 17 16 14 20 20 C 1.52996 * 109.47242 * 180.02562 * 19 17 16 21 21 C 1.53006 * 109.46976 * 299.99985 * 20 19 17 22 22 C 1.53004 * 109.47123 * 59.99942 * 21 20 19 23 23 C 1.52998 * 109.47023 * 185.00002 * 17 16 14 24 24 C 1.52996 * 109.47102 * 299.99582 * 23 17 16 25 25 C 1.52990 * 109.47183 * 60.00098 * 23 17 16 26 26 H 1.09004 * 109.46803 * 299.99447 * 1 2 3 27 27 H 1.09003 * 109.47210 * 59.99293 * 1 2 3 28 28 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 29 29 H 0.96993 * 120.00372 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47115 * 269.99822 * 13 12 2 31 31 H 1.08995 * 109.47364 * 30.00213 * 13 12 2 32 32 H 1.09002 * 109.47090 * 149.99764 * 13 12 2 33 33 H 1.09009 * 109.47352 * 300.27556 * 16 14 12 34 34 H 1.08998 * 109.47585 * 60.27844 * 16 14 12 35 35 H 1.09000 * 109.46939 * 300.00085 * 19 17 16 36 36 H 1.08997 * 109.47262 * 59.99878 * 19 17 16 37 37 H 1.08997 * 109.47278 * 59.99660 * 20 19 17 38 38 H 1.08991 * 109.47151 * 179.97438 * 20 19 17 39 39 H 1.08996 * 109.46680 * 179.97438 * 21 20 19 40 40 H 1.08997 * 109.46851 * 299.99936 * 21 20 19 41 41 H 1.09004 * 109.46838 * 59.99735 * 22 21 20 42 42 H 1.09000 * 109.46939 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47207 * 60.00326 * 24 23 17 44 44 H 1.09000 * 109.47145 * 180.02562 * 24 23 17 45 45 H 1.09000 * 109.47552 * 300.00495 * 24 23 17 46 46 H 1.08997 * 109.47390 * 60.00031 * 25 23 17 47 47 H 1.09000 * 109.46888 * 179.97438 * 25 23 17 48 48 H 1.08997 * 109.47517 * 299.99447 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 3.1453 -2.2874 -3.6040 10 1 1.1658 -1.5862 -4.8162 11 1 3.1465 -0.1870 -4.8166 12 7 2.0183 -0.6908 1.1960 13 6 1.6644 -2.0933 1.4277 14 6 2.7933 -0.0358 2.0832 15 8 3.0860 1.1254 1.8916 16 6 3.2905 -0.7446 3.3167 17 6 4.1360 0.2186 4.1524 18 1 4.9350 0.6296 3.5354 19 6 3.2529 1.3568 4.6678 20 6 4.0984 2.3203 5.5030 21 6 4.7059 1.5687 6.6893 22 6 5.5890 0.4306 6.1739 23 6 4.7429 -0.5333 5.3386 24 6 3.6213 -1.1101 6.2046 25 6 5.6260 -1.6713 4.8232 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 0.7093 1.1621 -3.4843 30 1 0.7376 -2.1446 1.9990 31 1 1.5295 -2.5969 0.4705 32 1 2.4629 -2.5821 1.9860 33 1 2.4402 -1.0871 3.9066 34 1 3.8980 -1.6008 3.0238 35 1 2.8205 1.8924 3.8227 36 1 2.4538 0.9458 5.2848 37 1 4.8973 2.7312 4.8858 38 1 3.4694 3.1313 5.8698 39 1 5.3086 2.2551 7.2840 40 1 3.9070 1.1578 7.3066 41 1 6.3878 0.8416 5.5565 42 1 6.0213 -0.1051 7.0190 43 1 3.0189 -1.7963 5.6093 44 1 4.0536 -1.6454 7.0500 45 1 2.9921 -0.2993 6.5718 46 1 6.4251 -1.2604 4.2063 47 1 6.0587 -2.2067 5.6684 48 1 5.0237 -2.3576 4.2279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125160638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:03 Heat of formation + Delta-G solvation = -68.788156 kcal Electronic energy + Delta-G solvation = -23850.304537 eV Core-core repulsion = 20710.913454 eV Total energy + Delta-G solvation = -3139.391082 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 3.42 seconds Orbital eigenvalues (eV) -40.20943 -38.46712 -35.28035 -33.43907 -32.80159 -32.01000 -29.54799 -27.62624 -27.24089 -26.03121 -25.53789 -25.17244 -22.32468 -21.05498 -20.45297 -18.20978 -18.00127 -16.60721 -16.17440 -15.36915 -15.13101 -15.01516 -14.47145 -14.36258 -14.11828 -13.63493 -13.43819 -12.93838 -12.73624 -12.45509 -12.31871 -12.24002 -11.91608 -11.83056 -11.54403 -11.51661 -11.41834 -11.31849 -11.16133 -11.00899 -10.91294 -10.80673 -10.66255 -10.50413 -10.21082 -10.15483 -10.01908 -9.83835 -9.75684 -9.12356 -8.71874 -8.39124 -7.50375 -6.05275 -4.13019 3.26544 3.34411 3.37161 3.51072 4.04555 4.41561 4.66240 4.70949 4.78517 5.12451 5.18913 5.25357 5.28769 5.37908 5.40192 5.49455 5.56577 5.63544 5.65983 5.72034 5.74922 5.80106 5.89269 5.94646 5.96541 6.01477 6.07172 6.08351 6.13452 6.23812 6.26979 6.36355 6.39871 6.41474 6.49458 6.73087 6.77103 6.81034 6.87448 7.10952 7.49272 7.58789 7.75632 8.05704 8.24011 8.61670 8.87277 9.16703 9.53773 11.00001 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.027331 B = 0.004130 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.227303 B = 6778.800117 C = 7001.539594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.596 5.596 13 C 0.085 3.915 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.055 4.055 18 H 0.076 0.924 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.106 4.106 23 C -0.061 4.061 24 C -0.146 4.146 25 C -0.145 4.145 26 H 0.010 0.990 27 H 0.092 0.908 28 H 0.028 0.972 29 H 0.262 0.738 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -4.636 17.353 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.327 5.327 13 C -0.059 4.059 14 C 0.289 3.711 15 O -0.431 6.431 16 C -0.179 4.179 17 C -0.074 4.074 18 H 0.094 0.906 19 C -0.158 4.158 20 C -0.154 4.154 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.061 4.061 24 C -0.203 4.203 25 C -0.202 4.202 26 H 0.029 0.971 27 H 0.110 0.890 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.231 -3.918 17.082 18.289 hybrid contribution 0.229 -0.671 -0.947 1.183 sum 5.459 -4.588 16.135 17.641 Atomic orbital electron populations 1.22072 0.98352 0.99279 1.00672 1.18904 0.90764 0.94549 0.80132 0.91954 1.21375 1.31600 1.12917 0.90380 0.92281 1.24898 0.94984 0.94995 0.98951 1.69893 1.36500 1.22638 1.23578 0.86458 0.78587 0.79599 0.82852 1.19839 1.20961 1.20925 1.48248 1.49206 1.11537 1.23725 1.21566 0.98645 0.83546 1.02171 1.20485 0.78987 0.87208 0.84371 1.90599 1.58425 1.17162 1.76874 1.21887 1.00831 0.99674 0.95495 1.20856 0.97709 0.94491 0.94368 0.90590 1.21740 0.97538 0.96476 1.00091 1.21495 0.99489 0.97829 0.96581 1.21592 0.99129 0.97226 0.97846 1.21572 0.97734 0.96135 0.98885 1.20555 0.95305 0.94941 0.95266 1.22019 0.98348 1.00757 0.99175 1.21944 0.99543 0.98007 1.00724 0.97117 0.88956 0.95275 0.92792 0.94093 0.90290 0.92906 0.89716 0.89453 0.89575 0.92747 0.92111 0.92557 0.92690 0.91977 0.92073 0.92440 0.92528 0.93231 0.92010 0.92660 0.93031 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 8.97 37.16 0.33 -3.20 16 2 C 0.26 6.63 2.64 -69.08 -0.18 6.45 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.27 7.99 -34.43 -0.28 -14.55 16 5 H 0.06 1.59 7.33 -52.49 -0.38 1.20 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.60 -12.77 2.75 -175.27 -0.48 -13.25 16 13 C 0.08 1.43 9.23 59.84 0.55 1.99 16 14 C 0.50 10.27 7.39 -10.98 -0.08 10.18 16 15 O -0.55 -13.28 13.29 5.55 0.07 -13.21 16 16 C -0.14 -2.05 3.01 -27.88 -0.08 -2.13 16 17 C -0.06 -0.76 1.14 -90.62 -0.10 -0.87 16 18 H 0.08 1.22 7.95 -51.93 -0.41 0.81 16 19 C -0.12 -1.72 4.67 -26.73 -0.12 -1.85 16 20 C -0.12 -1.42 5.92 -26.73 -0.16 -1.58 16 21 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 22 C -0.11 -1.07 4.73 -26.70 -0.13 -1.20 16 23 C -0.06 -0.65 0.54 -154.49 -0.08 -0.74 16 24 C -0.15 -1.43 7.43 37.16 0.28 -1.16 16 25 C -0.15 -1.47 8.13 37.15 0.30 -1.17 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.43 7.02 -51.93 -0.36 1.06 16 32 H 0.05 0.73 6.45 -51.93 -0.33 0.39 16 33 H 0.08 1.11 6.67 -51.92 -0.35 0.77 16 34 H 0.09 1.18 5.44 -51.93 -0.28 0.89 16 35 H 0.09 1.53 5.95 -51.93 -0.31 1.22 16 36 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.59 6.32 -51.93 -0.33 0.27 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -30.04 348.69 -8.00 -38.05 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -8.46 Total: 1.26 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: 0.00 Total: -9.53 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.15 Total: -37.96 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.07 Total: -13.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.04 -8.00 -38.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125160638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.742 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.42 seconds