Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46864 * 2 1 4 4 C 1.50691 * 109.47415 * 120.00150 * 2 1 3 5 5 H 1.08000 * 120.00346 * 120.00385 * 4 2 1 6 6 C 1.37880 * 119.99810 * 299.99571 * 4 2 1 7 7 N 1.31507 * 120.00094 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99653 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47287 * 90.00541 * 8 6 4 10 10 H 1.48500 * 109.46906 * 210.00312 * 8 6 4 11 11 H 1.48494 * 109.47298 * 330.00182 * 8 6 4 12 12 N 1.46504 * 109.46669 * 240.00275 * 2 1 3 13 13 C 1.46496 * 120.00097 * 299.99586 * 12 2 1 14 14 C 1.34773 * 119.99903 * 119.99638 * 12 2 1 15 15 O 1.21285 * 120.00146 * 0.02562 * 14 12 2 16 16 C 1.50707 * 120.00090 * 179.97438 * 14 12 2 17 17 C 1.52999 * 109.47009 * 180.02562 * 16 14 12 18 18 C 1.53006 * 109.46623 * 184.99986 * 17 16 14 19 19 C 1.52999 * 109.46626 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.46991 * 60.00378 * 19 18 17 21 21 C 1.53002 * 109.47143 * 179.97438 * 20 19 18 22 22 C 1.53004 * 109.47530 * 59.99990 * 20 19 18 23 23 C 1.52996 * 109.47131 * 299.99311 * 20 19 18 24 24 C 1.52997 * 109.47317 * 65.00166 * 17 16 14 25 25 H 1.08999 * 109.46864 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46842 * 299.99933 * 1 2 3 27 27 H 1.08989 * 109.47550 * 59.99817 * 1 2 3 28 28 H 0.96999 * 120.00080 * 179.97438 * 7 6 4 29 29 H 1.09006 * 109.46879 * 270.00062 * 13 12 2 30 30 H 1.09001 * 109.46919 * 29.99962 * 13 12 2 31 31 H 1.08999 * 109.47309 * 150.00354 * 13 12 2 32 32 H 1.08994 * 109.47032 * 59.99995 * 16 14 12 33 33 H 1.08998 * 109.46579 * 300.00432 * 16 14 12 34 34 H 1.09001 * 109.47362 * 304.99435 * 17 16 14 35 35 H 1.08993 * 109.46955 * 300.00075 * 18 17 16 36 36 H 1.09000 * 109.47050 * 59.99904 * 18 17 16 37 37 H 1.09002 * 109.46719 * 180.02562 * 19 18 17 38 38 H 1.08993 * 109.47839 * 299.99931 * 19 18 17 39 39 H 1.09000 * 109.47312 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.47593 * 300.00023 * 21 20 19 41 41 H 1.09004 * 109.46930 * 59.99935 * 21 20 19 42 42 H 1.09001 * 109.46322 * 299.99964 * 22 20 19 43 43 H 1.09002 * 109.47347 * 59.99574 * 22 20 19 44 44 H 1.08999 * 109.47550 * 180.02562 * 22 20 19 45 45 H 1.08996 * 109.47452 * 300.00000 * 23 20 19 46 46 H 1.09000 * 109.47054 * 180.02562 * 23 20 19 47 47 H 1.09002 * 109.47153 * 299.99641 * 24 17 16 48 48 H 1.08996 * 109.46952 * 59.99813 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6534 -1.5884 1.1313 6 6 1.6994 -0.2393 2.4826 7 7 0.9430 0.8297 2.6033 8 14 2.3228 -1.1195 4.0078 9 1 3.6308 -0.5440 4.4117 10 1 1.3448 -0.9490 5.1122 11 1 2.4883 -2.5653 3.7121 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7930 -0.0356 -2.0835 15 8 3.0864 1.1255 -1.8913 16 6 3.2958 -0.7461 -3.3138 17 6 4.1461 0.2155 -4.1463 18 6 4.5529 -0.4657 -5.4546 19 6 5.4027 0.4961 -6.2874 20 6 6.6575 0.8800 -5.5006 21 6 7.5076 1.8414 -6.3337 22 6 7.4694 -0.3789 -5.1892 23 6 6.2506 1.5612 -4.1925 24 6 5.4008 0.5989 -3.3593 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8898 28 1 0.7084 1.1609 3.4843 29 1 2.4158 -2.7376 -0.9718 30 1 0.6904 -2.3001 -0.9846 31 1 1.6237 -2.2852 -2.5003 32 1 2.4482 -1.0890 -3.9071 33 1 3.9015 -1.6022 -3.0168 34 1 3.5681 1.1126 -4.3683 35 1 5.1309 -1.3627 -5.2326 36 1 3.6590 -0.7389 -6.0153 37 1 5.6922 0.0110 -7.2196 38 1 4.8245 1.3930 -6.5094 39 1 8.4013 2.1153 -5.7730 40 1 7.7975 1.3559 -7.2656 41 1 6.9294 2.7384 -6.5559 42 1 6.8639 -1.0640 -4.5959 43 1 7.7592 -0.8641 -6.1212 44 1 8.3630 -0.1054 -4.6283 45 1 5.6723 2.4581 -4.4143 46 1 7.1446 1.8351 -3.6321 47 1 5.1110 1.0842 -2.4273 48 1 5.9788 -0.2982 -3.1374 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125168545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -72.414968 kcal Electronic energy + Delta-G solvation = -23440.699779 eV Core-core repulsion = 20301.151427 eV Total energy + Delta-G solvation = -3139.548353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.92877 -38.61797 -35.40885 -33.98101 -32.80030 -30.65634 -29.95388 -28.40753 -27.38642 -26.06048 -25.20619 -24.63528 -22.61536 -21.30550 -20.10675 -18.40103 -18.08236 -16.52983 -16.06447 -15.34674 -15.16198 -14.89796 -14.77809 -14.35030 -13.96226 -13.67008 -13.38193 -13.15417 -12.62692 -12.48531 -12.32733 -12.23153 -11.88902 -11.83527 -11.65259 -11.51314 -11.50154 -11.24605 -11.13750 -11.01133 -10.84317 -10.80818 -10.65386 -10.62552 -10.22185 -10.13908 -10.01133 -9.95098 -9.77132 -9.13949 -8.72271 -8.38960 -7.50885 -6.04778 -4.12564 3.28171 3.34523 3.36094 3.50119 4.04067 4.41902 4.65348 4.70116 4.77285 5.06850 5.15148 5.25306 5.26069 5.40019 5.42995 5.47989 5.59003 5.65255 5.67253 5.71908 5.76316 5.77066 5.85049 5.86594 5.96004 5.98422 6.03595 6.08109 6.14708 6.19536 6.27377 6.33573 6.34892 6.40930 6.49589 6.74109 6.78941 6.83600 6.85719 7.09766 7.49824 7.57352 7.75545 8.05432 8.23874 8.61335 8.87561 9.15767 9.54248 11.00438 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.003819 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.982232 B = 7329.276326 C = 7669.536530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.502 3.498 15 O -0.551 6.551 16 C -0.136 4.136 17 C -0.067 4.067 18 C -0.116 4.116 19 C -0.105 4.105 20 C -0.067 4.067 21 C -0.141 4.141 22 C -0.144 4.144 23 C -0.104 4.104 24 C -0.121 4.121 25 H 0.029 0.971 26 H 0.093 0.907 27 H 0.010 0.990 28 H 0.263 0.737 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.051 0.949 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.833 -4.060 -16.685 18.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.527 5.527 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.328 5.328 13 C -0.056 4.056 14 C 0.289 3.711 15 O -0.430 6.430 16 C -0.176 4.176 17 C -0.086 4.086 18 C -0.154 4.154 19 C -0.143 4.143 20 C -0.067 4.067 21 C -0.198 4.198 22 C -0.201 4.201 23 C -0.142 4.142 24 C -0.159 4.159 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.879 -3.340 -16.412 18.509 hybrid contribution 0.225 -0.672 0.940 1.177 sum 8.104 -4.012 -15.472 17.921 Atomic orbital electron populations 1.22092 0.98424 0.99267 1.00776 1.18900 0.90736 0.94526 0.80128 0.91942 1.21331 1.31649 1.12906 0.90372 0.92382 1.24895 0.94982 0.95001 0.98944 1.69878 1.36420 1.22708 1.23677 0.86511 0.78655 0.79870 0.82441 1.20627 1.21145 1.19953 1.48256 1.49233 1.11571 1.23704 1.21530 1.01437 0.83400 0.99263 1.20455 0.78957 0.87191 0.84448 1.90602 1.58090 1.17240 1.77071 1.21772 1.00409 0.99656 0.95802 1.20863 0.96224 0.97968 0.93552 1.21654 0.99201 0.98553 0.95964 1.21548 0.95761 0.99359 0.97582 1.20562 0.94983 0.95466 0.95680 1.21869 0.99547 0.99029 0.99365 1.21964 0.99609 0.97454 1.01046 1.21561 0.99361 0.98439 0.94818 1.21750 0.94973 0.99177 0.99951 0.95179 0.88873 0.97042 0.92738 0.93481 0.91056 0.92986 0.89867 0.89794 0.90691 0.91816 0.92344 0.92453 0.92098 0.92868 0.93056 0.92821 0.91816 0.93251 0.93034 0.92103 0.92454 0.89450 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.95 37.16 0.33 -3.23 16 2 C 0.26 6.65 2.64 -69.08 -0.18 6.46 16 3 H 0.06 1.87 6.90 -51.93 -0.36 1.51 16 4 C -0.52 -14.32 8.37 -34.44 -0.29 -14.61 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -25.39 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 12 N -0.60 -12.78 2.75 -175.26 -0.48 -13.26 16 13 C 0.09 1.48 9.48 59.84 0.57 2.05 16 14 C 0.50 10.25 7.39 -10.98 -0.08 10.17 16 15 O -0.55 -13.25 13.29 5.55 0.07 -13.18 16 16 C -0.14 -2.00 3.73 -27.88 -0.10 -2.10 16 17 C -0.07 -0.92 1.84 -90.62 -0.17 -1.09 16 18 C -0.12 -1.25 4.93 -26.73 -0.13 -1.38 16 19 C -0.11 -1.06 4.73 -26.73 -0.13 -1.18 16 20 C -0.07 -0.69 0.77 -154.51 -0.12 -0.81 16 21 C -0.14 -1.29 8.47 37.16 0.31 -0.97 16 22 C -0.14 -1.41 7.78 37.16 0.29 -1.12 16 23 C -0.10 -1.31 4.73 -26.71 -0.13 -1.43 16 24 C -0.12 -1.77 4.67 -26.71 -0.12 -1.89 16 25 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 26 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 27 H 0.01 0.24 8.14 -51.94 -0.42 -0.18 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 31 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 32 H 0.08 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 34 H 0.07 1.16 7.96 -51.93 -0.41 0.75 16 35 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 43 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.09 1.61 5.95 -51.93 -0.31 1.31 16 48 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -30.11 355.24 -8.23 -38.34 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -8.74 Total: 0.77 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -0.04 Total: -9.47 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.14 Total: -38.02 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.07 Total: -13.18 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.11 -8.23 -38.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125168545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.075 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds