Wall clock time and date at job start Tue Mar 31 2020 05:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46818 * 2 1 4 4 C 1.53000 * 109.46947 * 120.00190 * 2 1 3 5 5 C 1.52991 * 109.47196 * 65.00263 * 4 2 1 6 6 H 1.09000 * 109.47175 * 304.99699 * 5 4 2 7 7 C 1.52999 * 109.47380 * 64.99537 * 5 4 2 8 8 C 1.52997 * 109.47162 * 184.99639 * 5 4 2 9 9 C 1.50709 * 109.47176 * 174.99901 * 8 5 4 10 10 O 1.21289 * 120.00013 * 0.02562 * 9 8 5 11 11 N 1.34772 * 119.99799 * 180.27704 * 9 8 5 12 12 C 1.37096 * 120.00235 * 179.72340 * 11 9 8 13 13 H 1.07995 * 120.00555 * 222.81220 * 12 11 9 14 14 C 1.38957 * 119.99470 * 42.80557 * 12 11 9 15 15 N 1.31405 * 119.99945 * 19.13023 * 14 12 11 16 16 Si 1.86800 * 119.99830 * 199.12206 * 14 12 11 17 17 H 1.48497 * 109.47253 * 60.00115 * 16 14 12 18 18 H 1.48504 * 109.47046 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47148 * 300.00391 * 16 14 12 20 20 C 1.46499 * 120.00343 * 359.72569 * 11 9 8 21 21 C 1.54271 * 110.03494 * 239.52483 * 20 11 9 22 22 C 1.54968 * 104.15687 * 217.13446 * 21 20 11 23 23 C 1.54891 * 102.78028 * 37.88776 * 22 21 20 24 24 C 1.53877 * 110.03480 * 122.30348 * 20 11 9 25 25 H 1.09004 * 109.46970 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46909 * 299.99926 * 1 2 3 27 27 H 1.08998 * 109.47119 * 59.99824 * 1 2 3 28 28 H 1.08995 * 109.46909 * 240.00074 * 2 1 3 29 29 H 1.08992 * 109.47123 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47461 * 300.00535 * 3 2 1 31 31 H 1.09004 * 109.47155 * 60.00162 * 3 2 1 32 32 H 1.09004 * 109.47184 * 304.99967 * 4 2 1 33 33 H 1.08999 * 109.46653 * 185.00304 * 4 2 1 34 34 H 1.09007 * 109.47464 * 179.97438 * 7 5 4 35 35 H 1.08994 * 109.47606 * 300.00324 * 7 5 4 36 36 H 1.09000 * 109.46834 * 59.99954 * 7 5 4 37 37 H 1.09004 * 109.47246 * 55.00312 * 8 5 4 38 38 H 1.08996 * 109.47555 * 294.99696 * 8 5 4 39 39 H 0.97007 * 120.00058 * 174.70742 * 15 14 12 40 40 H 1.09007 * 110.01523 * 0.91040 * 20 11 9 41 41 H 1.09001 * 110.47872 * 335.77863 * 21 20 11 42 42 H 1.08990 * 110.48856 * 98.42417 * 21 20 11 43 43 H 1.08998 * 110.72084 * 279.56868 * 22 21 20 44 44 H 1.09003 * 110.91865 * 156.29282 * 22 21 20 45 45 H 1.08998 * 110.48661 * 203.40872 * 23 22 21 46 46 H 1.08996 * 110.60216 * 80.81060 * 23 22 21 47 47 H 1.09002 * 110.03029 * 238.57128 * 24 20 11 48 48 H 1.08996 * 110.02963 * 359.95124 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6354 -2.1954 1.1879 6 1 0.5564 -2.2707 1.0526 7 6 2.3449 -2.8707 0.0125 8 6 2.0355 -2.8888 2.4917 9 6 1.5286 -4.3081 2.4820 10 8 0.9087 -4.7241 1.5261 11 7 1.7597 -5.1134 3.5376 12 6 1.2938 -6.4027 3.5313 13 1 0.8380 -6.8166 4.4186 14 6 1.4078 -7.1769 2.3830 15 7 2.2681 -6.8424 1.4478 16 14 0.3382 -8.6934 2.1691 17 1 -1.0928 -8.2974 2.1942 18 1 0.6506 -9.3402 0.8693 19 1 0.6068 -9.6485 3.2740 20 6 2.5089 -4.6111 4.6920 21 6 3.7742 -5.4654 4.9134 22 6 3.9100 -5.5494 6.4548 23 6 2.4384 -5.6719 6.9222 24 6 1.6600 -4.7418 5.9688 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 1.6054 -0.2618 2.1370 33 1 3.1264 -0.6443 1.2951 34 1 2.0569 -3.9211 -0.0309 35 1 2.0599 -2.3768 -0.9163 36 1 3.4239 -2.7954 0.1478 37 1 1.6010 -2.3537 3.3361 38 1 3.1216 -2.8917 2.5833 39 1 2.4030 -7.4232 0.6826 40 1 2.7854 -3.5688 4.5326 41 1 3.6421 -6.4600 4.4874 42 1 4.6458 -4.9759 4.4790 43 1 4.3672 -4.6430 6.8516 44 1 4.4828 -6.4293 6.7477 45 1 2.3361 -5.3332 7.9532 46 1 2.0886 -6.6994 6.8226 47 1 1.5252 -3.7631 6.4294 48 1 0.6903 -5.1782 5.7294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125195589.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:26 Heat of formation + Delta-G solvation = -63.729514 kcal Electronic energy + Delta-G solvation = -23842.093404 eV Core-core repulsion = 20702.921680 eV Total energy + Delta-G solvation = -3139.171723 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.96683 -37.52603 -36.35206 -33.50891 -32.62128 -31.40738 -28.02246 -27.48753 -27.02479 -26.75270 -26.14830 -24.16482 -21.05327 -20.05158 -19.68534 -19.22422 -18.52886 -16.31385 -15.86161 -15.15572 -14.95681 -14.63848 -14.36313 -14.06068 -13.81307 -13.33894 -13.31040 -12.98901 -12.67526 -12.37108 -12.23206 -12.10354 -11.59061 -11.45503 -11.24374 -10.99316 -10.94136 -10.87180 -10.82379 -10.69294 -10.58683 -10.46890 -10.44620 -10.40090 -10.16522 -10.00136 -9.92162 -9.91801 -9.85953 -9.60811 -8.61926 -7.77320 -6.93072 -5.99717 -3.70781 3.35863 3.42690 3.46687 4.31517 4.51083 4.86584 5.05156 5.11334 5.15662 5.25103 5.29737 5.43522 5.52699 5.59328 5.65122 5.73509 5.78586 5.85164 5.91422 5.95923 5.97867 6.12550 6.15037 6.16715 6.19487 6.20827 6.23458 6.29513 6.36080 6.38882 6.40460 6.47219 6.50405 6.53396 6.54157 6.66684 6.67362 6.76895 6.87828 7.02594 7.06432 7.26694 7.37861 7.74754 8.41216 9.21668 9.34383 9.83858 10.49077 11.09635 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.005722 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.415042 B = 4891.828887 C = 6176.193954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.099 4.099 3 C -0.146 4.146 4 C -0.109 4.109 5 C -0.070 4.070 6 H 0.074 0.926 7 C -0.148 4.148 8 C -0.130 4.130 9 C 0.477 3.523 10 O -0.532 6.532 11 N -0.452 5.452 12 C -0.342 4.342 13 H 0.074 0.926 14 C 0.075 3.925 15 N -0.832 5.832 16 Si 0.906 3.094 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.281 1.281 20 C 0.130 3.870 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.131 4.131 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.047 0.953 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.261 0.739 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 10.656 3.783 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.088 4.088 6 H 0.092 0.908 7 C -0.205 4.205 8 C -0.171 4.171 9 C 0.265 3.735 10 O -0.410 6.410 11 N -0.174 5.174 12 C -0.469 4.469 13 H 0.092 0.908 14 C -0.135 4.135 15 N -0.466 5.466 16 Si 0.734 3.266 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.207 1.207 20 C 0.025 3.975 21 C -0.163 4.163 22 C -0.161 4.161 23 C -0.155 4.155 24 C -0.169 4.169 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.108 0.892 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.887 10.428 3.052 11.028 hybrid contribution -0.261 -0.729 -0.032 0.775 sum 1.626 9.699 3.019 10.288 Atomic orbital electron populations 1.21888 0.95514 1.02302 1.00886 1.21157 0.95847 0.95454 0.99278 1.21845 1.00695 0.96557 1.01193 1.21729 1.00286 0.95718 0.96960 1.20832 1.01025 0.92267 0.94724 0.90759 1.21947 0.98634 1.03803 0.96107 1.21687 1.01107 0.96409 0.97902 1.19867 0.83253 0.85665 0.84738 1.90465 1.41990 1.75383 1.33209 1.43414 1.48557 1.10656 1.14808 1.18732 1.39924 0.88694 0.99506 0.90829 1.25145 0.95040 0.97211 0.96145 1.69822 1.30414 1.36232 1.10120 0.86386 0.81531 0.81683 0.77012 1.20199 1.21442 1.20662 1.21663 0.91350 0.96504 0.87975 1.22655 0.96713 1.02867 0.94077 1.22451 0.96388 1.00289 0.96939 1.22253 0.95462 1.00213 0.97533 1.22458 1.00426 0.98394 0.95664 0.91866 0.93067 0.93414 0.90930 0.92987 0.93192 0.93016 0.92577 0.92472 0.89175 0.94277 0.94386 0.91565 0.91300 0.92897 0.91587 0.89163 0.93141 0.92596 0.92434 0.93009 0.91650 0.93072 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 2 C -0.10 -1.25 2.78 -90.61 -0.25 -1.50 16 3 C -0.15 -1.54 9.19 37.16 0.34 -1.19 16 4 C -0.11 -1.53 4.15 -26.74 -0.11 -1.64 16 5 C -0.07 -1.23 1.90 -90.63 -0.17 -1.41 16 6 H 0.07 1.43 6.16 -51.93 -0.32 1.11 16 7 C -0.15 -2.82 8.70 37.16 0.32 -2.50 16 8 C -0.13 -2.51 3.49 -27.88 -0.10 -2.61 16 9 C 0.48 11.81 6.69 -10.98 -0.07 11.74 16 10 O -0.53 -15.14 11.61 5.55 0.06 -15.07 16 11 N -0.45 -10.99 2.46 -106.53 -0.26 -11.25 16 12 C -0.34 -9.13 7.45 -14.93 -0.11 -9.24 16 13 H 0.07 1.93 7.09 -52.49 -0.37 1.56 16 14 C 0.07 2.07 4.35 -17.47 -0.08 2.00 16 15 N -0.83 -24.22 11.67 55.50 0.65 -23.57 16 16 Si 0.91 22.05 29.60 -169.99 -5.03 17.02 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.13 2.56 3.20 -66.81 -0.21 2.35 16 21 C -0.12 -2.35 6.42 -25.03 -0.16 -2.51 16 22 C -0.12 -1.86 6.91 -24.70 -0.17 -2.03 16 23 C -0.12 -1.81 6.83 -25.07 -0.17 -1.98 16 24 C -0.13 -2.27 6.19 -25.61 -0.16 -2.43 16 25 H 0.06 0.89 6.46 -51.93 -0.34 0.56 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.97 6.34 -51.93 -0.33 0.64 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 2.15 5.95 -51.92 -0.31 1.84 16 35 H 0.04 0.66 6.46 -51.93 -0.34 0.32 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.15 7.78 -51.93 -0.40 0.74 16 38 H 0.07 1.29 7.81 -51.93 -0.41 0.88 16 39 H 0.26 7.40 8.32 -40.82 -0.34 7.06 16 40 H 0.07 1.19 5.82 -51.92 -0.30 0.89 16 41 H 0.09 2.03 7.10 -51.93 -0.37 1.66 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -30.07 360.01 -8.82 -38.89 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.89 Total: 3.05 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.77 Total: -14.48 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.39 Total: -34.82 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.06 Total: -15.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.07 -8.82 -38.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125195589.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.844 kcal (2) G-P(sol) polarization free energy of solvation -30.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds