Wall clock time and date at job start Tue Mar 31 2020 05:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46798 * 2 1 4 4 C 1.53002 * 109.47351 * 119.99828 * 2 1 3 5 5 C 1.52997 * 109.46803 * 64.87365 * 4 2 1 6 6 H 1.09005 * 109.47131 * 305.74770 * 5 4 2 7 7 C 1.53001 * 109.47051 * 185.75511 * 5 4 2 8 8 C 1.52992 * 109.47667 * 65.75219 * 5 4 2 9 9 C 1.50700 * 109.47303 * 185.00064 * 8 5 4 10 10 O 1.21294 * 120.00163 * 359.97438 * 9 8 5 11 11 N 1.34775 * 119.99881 * 179.97438 * 9 8 5 12 12 C 1.37100 * 119.99669 * 179.97438 * 11 9 8 13 13 H 1.08004 * 119.99440 * 138.54835 * 12 11 9 14 14 C 1.38949 * 120.00474 * 318.54512 * 12 11 9 15 15 N 1.31410 * 120.00111 * 159.39296 * 14 12 11 16 16 Si 1.86800 * 119.99681 * 339.39214 * 14 12 11 17 17 H 1.48503 * 109.47322 * 95.50858 * 16 14 12 18 18 H 1.48501 * 109.47069 * 215.50585 * 16 14 12 19 19 H 1.48502 * 109.47184 * 335.50714 * 16 14 12 20 20 C 1.46494 * 120.00212 * 0.02562 * 11 9 8 21 21 C 1.54966 * 110.92587 * 123.82831 * 20 11 9 22 22 C 1.54268 * 104.16071 * 156.29578 * 21 20 11 23 23 C 1.53881 * 106.64178 * 336.44420 * 22 21 20 24 24 C 1.54272 * 106.59404 * 359.97438 * 23 22 21 25 25 H 1.09001 * 109.46906 * 301.09854 * 1 2 3 26 26 H 1.08998 * 109.47042 * 61.10292 * 1 2 3 27 27 H 1.09001 * 109.46728 * 181.10358 * 1 2 3 28 28 H 1.08999 * 109.47395 * 240.00230 * 2 1 3 29 29 H 1.08998 * 109.47170 * 180.02562 * 3 2 1 30 30 H 1.08995 * 109.47053 * 299.99862 * 3 2 1 31 31 H 1.08999 * 109.46960 * 59.99963 * 3 2 1 32 32 H 1.08999 * 109.46785 * 304.86659 * 4 2 1 33 33 H 1.09006 * 109.46883 * 184.86992 * 4 2 1 34 34 H 1.08996 * 109.47221 * 63.47309 * 7 5 4 35 35 H 1.08997 * 109.47298 * 183.47825 * 7 5 4 36 36 H 1.09004 * 109.46859 * 303.48114 * 7 5 4 37 37 H 1.09000 * 109.47392 * 64.99569 * 8 5 4 38 38 H 1.09002 * 109.46681 * 304.99962 * 8 5 4 39 39 H 0.97005 * 119.99922 * 180.02562 * 15 14 12 40 40 H 1.09002 * 110.67171 * 0.52120 * 20 11 9 41 41 H 1.09000 * 110.47761 * 37.64570 * 21 20 11 42 42 H 1.09000 * 110.53408 * 274.97494 * 21 20 11 43 43 H 1.08996 * 110.03258 * 217.14138 * 22 21 20 44 44 H 1.08995 * 110.03705 * 95.75256 * 22 21 20 45 45 H 1.09002 * 110.03163 * 119.25919 * 23 22 21 46 46 H 1.08998 * 110.03690 * 240.64397 * 23 22 21 47 47 H 1.08996 * 110.48291 * 142.28728 * 24 23 22 48 48 H 1.09000 * 110.48476 * 264.79378 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6326 -2.1947 1.1895 6 1 0.5550 -2.2680 1.0421 7 6 2.0159 -2.8834 2.5008 8 6 2.3541 -2.8767 0.0254 9 6 1.8611 -4.2943 -0.1099 10 8 1.0162 -4.7178 0.6503 11 7 2.3592 -5.0916 -1.0756 12 6 1.9110 -6.3815 -1.1984 13 1 1.7218 -6.7965 -2.1774 14 6 1.7003 -7.1548 -0.0634 15 7 0.9134 -8.2057 -0.1210 16 14 2.5358 -6.7006 1.5445 17 1 1.6085 -5.8876 2.3718 18 1 2.8996 -7.9383 2.2801 19 1 3.7634 -5.9150 1.2598 20 6 3.3801 -4.5804 -1.9935 21 6 4.6472 -5.4720 -1.9640 22 6 5.3217 -5.2145 -3.3273 23 6 4.2167 -4.7263 -4.2804 24 6 2.9082 -4.7045 -3.4635 25 1 -0.3633 0.5308 0.8800 26 1 -0.3633 0.4966 -0.8997 27 1 -0.3633 -1.0275 0.0198 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4427 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6073 -0.2601 2.1371 33 1 3.1266 -0.6462 1.2939 34 1 1.4551 -2.4382 3.3225 35 1 1.7821 -3.9460 2.4350 36 1 3.0838 -2.7567 2.6791 37 1 3.4273 -2.8818 0.2160 38 1 2.1514 -2.3319 -0.8967 39 1 0.7661 -8.7454 0.6715 40 1 3.6301 -3.5469 -1.7539 41 1 4.3723 -6.5223 -1.8668 42 1 5.3067 -5.1724 -1.1495 43 1 5.7611 -6.1371 -3.7067 44 1 6.0911 -4.4494 -3.2247 45 1 4.4494 -3.7238 -4.6396 46 1 4.1204 -5.4114 -5.1227 47 1 2.2988 -3.8448 -3.7423 48 1 2.3510 -5.6297 -3.6108 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125195784.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:28 Heat of formation + Delta-G solvation = -61.365196 kcal Electronic energy + Delta-G solvation = -24196.670050 eV Core-core repulsion = 21057.600852 eV Total energy + Delta-G solvation = -3139.069199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.47320 -37.69793 -36.71585 -33.79735 -32.99028 -31.79992 -28.19228 -27.97783 -27.15080 -27.07026 -26.32317 -24.13415 -20.92510 -20.32946 -19.88462 -19.63715 -18.60080 -16.97913 -16.17349 -15.43073 -15.20809 -14.87266 -14.55683 -13.97614 -13.94474 -13.71827 -13.36585 -12.97097 -12.81940 -12.60370 -12.41298 -12.32126 -12.19804 -11.85372 -11.64541 -11.41384 -11.17747 -11.06526 -11.05590 -10.86910 -10.78868 -10.67902 -10.55746 -10.28675 -10.15757 -10.06284 -10.00506 -9.90504 -9.84709 -9.75027 -8.45472 -8.24334 -7.47575 -6.12282 -3.85436 3.36447 3.51262 3.67572 3.93625 4.46752 4.62312 4.84657 4.95433 5.01004 5.09366 5.13947 5.22124 5.30757 5.39594 5.54424 5.57669 5.64907 5.71746 5.72466 5.77274 5.87112 5.90770 5.96658 6.00888 6.03159 6.05899 6.06443 6.09118 6.10298 6.13893 6.21266 6.31182 6.31467 6.33459 6.38878 6.41708 6.45683 6.60064 6.74709 6.84027 6.84649 6.96658 7.02271 7.93236 8.08120 8.88568 9.04064 9.53056 9.94376 10.93282 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.007365 C = 0.005454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.694614 B = 3800.964900 C = 5132.377227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.109 4.109 5 C -0.074 4.074 6 H 0.081 0.919 7 C -0.160 4.160 8 C -0.133 4.133 9 C 0.449 3.551 10 O -0.542 6.542 11 N -0.458 5.458 12 C -0.343 4.343 13 H 0.093 0.907 14 C 0.093 3.907 15 N -0.869 5.869 16 Si 0.907 3.093 17 H -0.251 1.251 18 H -0.314 1.314 19 H -0.281 1.281 20 C 0.127 3.873 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.120 4.120 24 C -0.130 4.130 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.270 0.730 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.056 0.944 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.440 14.640 -2.578 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.119 4.119 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.093 4.093 6 H 0.099 0.901 7 C -0.217 4.217 8 C -0.173 4.173 9 C 0.239 3.761 10 O -0.425 6.425 11 N -0.179 5.179 12 C -0.469 4.469 13 H 0.110 0.890 14 C -0.116 4.116 15 N -0.504 5.504 16 Si 0.739 3.261 17 H -0.177 1.177 18 H -0.244 1.244 19 H -0.207 1.207 20 C 0.022 3.978 21 C -0.169 4.169 22 C -0.159 4.159 23 C -0.158 4.158 24 C -0.168 4.168 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.916 14.265 -2.135 15.590 hybrid contribution 0.567 0.119 0.685 0.897 sum 6.483 14.384 -1.450 15.844 Atomic orbital electron populations 1.21897 0.95342 1.02411 1.01049 1.21193 0.96039 0.95652 0.99062 1.21839 1.00696 0.96414 1.01321 1.21728 1.00393 0.95210 0.97308 1.20891 1.01097 0.92728 0.94541 0.90106 1.22096 0.99626 1.03891 0.96112 1.21746 1.00616 0.95293 0.99673 1.20373 0.84265 0.86830 0.84639 1.90490 1.33860 1.74973 1.43168 1.43683 1.33881 1.11574 1.28794 1.18649 1.46100 0.86962 0.95152 0.88972 1.25255 0.93576 0.93744 0.98994 1.69770 1.32052 1.17851 1.30727 0.86499 0.79094 0.76313 0.84198 1.17678 1.24365 1.20681 1.22116 0.88760 0.96588 0.90368 1.22655 0.95937 1.02793 0.95565 1.22061 0.97493 1.00392 0.95917 1.22060 0.95409 1.00288 0.98065 1.22624 0.96713 1.02726 0.94766 0.93057 0.93183 0.91818 0.90924 0.92945 0.93035 0.93008 0.92154 0.92324 0.93621 0.89692 0.94085 0.90835 0.90143 0.92045 0.90533 0.89398 0.92690 0.92211 0.92611 0.92554 0.92232 0.92493 0.89986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 8.98 37.16 0.33 -1.43 16 2 C -0.10 -1.17 2.80 -90.61 -0.25 -1.42 16 3 C -0.15 -1.40 9.19 37.16 0.34 -1.06 16 4 C -0.11 -1.38 4.14 -26.73 -0.11 -1.49 16 5 C -0.07 -1.21 1.91 -90.62 -0.17 -1.39 16 6 H 0.08 1.45 6.10 -51.93 -0.32 1.13 16 7 C -0.16 -2.85 8.97 37.16 0.33 -2.52 16 8 C -0.13 -2.34 3.37 -27.89 -0.09 -2.43 16 9 C 0.45 10.42 5.60 -10.99 -0.06 10.36 16 10 O -0.54 -14.60 9.73 5.55 0.05 -14.55 16 11 N -0.46 -10.73 2.24 -105.58 -0.24 -10.97 16 12 C -0.34 -9.45 8.15 -14.93 -0.12 -9.57 16 13 H 0.09 2.67 6.77 -52.48 -0.36 2.31 16 14 C 0.09 2.72 4.81 -17.47 -0.08 2.64 16 15 N -0.87 -26.68 13.96 55.50 0.77 -25.90 16 16 Si 0.91 24.25 24.21 -169.99 -4.11 20.14 16 17 H -0.25 -6.88 5.17 56.52 0.29 -6.59 16 18 H -0.31 -8.37 7.11 56.52 0.40 -7.97 16 19 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 20 C 0.13 2.34 3.20 -65.90 -0.21 2.13 16 21 C -0.13 -2.31 6.38 -25.03 -0.16 -2.47 16 22 C -0.12 -1.67 6.80 -25.61 -0.17 -1.85 16 23 C -0.12 -1.63 6.80 -25.61 -0.17 -1.81 16 24 C -0.13 -2.18 6.37 -25.07 -0.16 -2.34 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.86 6.39 -51.93 -0.33 0.53 16 28 H 0.07 0.87 6.29 -51.93 -0.33 0.55 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.87 4.00 -51.93 -0.21 1.67 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.21 7.79 -51.93 -0.40 0.81 16 38 H 0.08 1.25 5.95 -51.93 -0.31 0.95 16 39 H 0.27 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.08 1.24 5.89 -51.93 -0.31 0.94 16 41 H 0.09 1.80 7.19 -51.93 -0.37 1.42 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.59 6.49 -51.93 -0.34 1.25 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -31.38 350.27 -7.87 -39.25 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -8.85 Total: 1.40 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.77 Total: -14.64 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.54 Total: -36.87 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.05 Total: -14.55 kcal Atomic # 14 Polarization: 24.25 SS G_CDS: -4.11 Total: 20.14 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.38 -7.87 -39.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125195784.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.116 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds