Wall clock time and date at job start Tue Mar 31 2020 06:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42896 * 109.47198 * 2 1 4 4 C 1.42902 * 114.00105 * 179.97438 * 3 2 1 5 5 H 1.08998 * 112.92223 * 21.79205 * 4 3 2 6 6 C 1.53856 * 113.62829 * 250.49117 * 4 3 2 7 7 C 1.53852 * 87.14454 * 220.31850 * 6 4 3 8 8 H 1.08996 * 113.63206 * 270.54606 * 7 6 4 9 9 N 1.46903 * 113.62905 * 139.67446 * 7 6 4 10 10 C 1.46899 * 110.99719 * 156.50971 * 9 7 6 11 11 C 1.46904 * 111.00047 * 32.55592 * 9 7 6 12 12 C 1.50694 * 109.46870 * 194.66089 * 11 9 7 13 13 H 1.08002 * 120.00212 * 0.02562 * 12 11 9 14 14 C 1.37875 * 120.00251 * 180.02562 * 12 11 9 15 15 N 1.31522 * 119.99550 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00425 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47034 * 90.00233 * 16 14 12 18 18 H 1.48506 * 109.47032 * 210.00210 * 16 14 12 19 19 H 1.48498 * 109.46943 * 329.99923 * 16 14 12 20 20 C 1.53390 * 113.63376 * 153.10344 * 4 3 2 21 21 C 1.52716 * 113.56244 * 254.32820 * 20 4 3 22 22 C 1.53137 * 109.23832 * 187.47030 * 21 20 4 23 23 C 1.52967 * 109.43617 * 302.16758 * 22 21 20 24 24 C 1.52976 * 109.69836 * 61.68329 * 23 22 21 25 25 C 1.52731 * 113.55357 * 25.15917 * 20 4 3 26 26 H 1.09011 * 109.46546 * 60.00459 * 1 2 3 27 27 H 1.09002 * 109.47269 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47536 * 300.00482 * 1 2 3 29 29 H 1.08999 * 109.47536 * 239.99518 * 2 1 3 30 30 H 1.09004 * 109.47166 * 119.99565 * 2 1 3 31 31 H 1.09007 * 113.60380 * 105.75933 * 6 4 3 32 32 H 1.08997 * 113.68411 * 334.90097 * 6 4 3 33 33 H 1.08999 * 109.47031 * 55.30070 * 10 9 7 34 34 H 1.08995 * 109.47281 * 295.29964 * 10 9 7 35 35 H 1.08998 * 109.46925 * 175.29648 * 10 9 7 36 36 H 1.08994 * 109.46961 * 314.65949 * 11 9 7 37 37 H 1.08992 * 109.46900 * 74.65835 * 11 9 7 38 38 H 0.96999 * 119.99896 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.51371 * 307.40323 * 21 20 4 40 40 H 1.09001 * 109.50804 * 67.54169 * 21 20 4 41 41 H 1.08998 * 109.48205 * 182.17824 * 22 21 20 42 42 H 1.09009 * 109.48300 * 62.15794 * 22 21 20 43 43 H 1.08998 * 109.43255 * 301.61740 * 23 22 21 44 44 H 1.08992 * 109.39764 * 181.73071 * 23 22 21 45 45 H 1.09003 * 109.47880 * 178.32318 * 24 23 22 46 46 H 1.09000 * 109.48833 * 58.30612 * 24 23 22 47 47 H 1.09001 * 109.50563 * 292.44936 * 25 20 4 48 48 H 1.08998 * 109.50919 * 52.54510 * 25 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9278 0.5643 -0.3718 6 6 4.0079 1.9782 1.3294 7 6 4.9879 2.8150 0.4889 8 1 5.9158 2.2943 0.2527 9 7 5.2107 4.1674 1.0173 10 6 6.4985 4.7059 0.5593 11 6 5.1264 4.1801 2.4839 12 6 4.9984 5.6017 2.9673 13 1 4.9810 6.4144 2.2562 14 6 4.9036 5.8649 4.3173 15 7 4.9253 4.8752 5.1833 16 14 4.7456 7.6271 4.9166 17 1 3.3094 7.9958 4.9966 18 1 5.3639 7.7499 6.2613 19 1 5.4381 8.5363 3.9685 20 6 3.9452 2.7579 -0.6351 21 6 4.5545 2.5590 -2.0212 22 6 5.1993 3.8694 -2.4817 23 6 4.1468 4.9794 -2.4896 24 6 3.6086 5.1896 -1.0732 25 6 2.9353 3.9027 -0.5876 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 4.4937 1.2054 1.9252 32 1 3.3054 2.5788 1.9072 33 1 6.5396 4.6727 -0.5294 34 1 7.3102 4.1070 0.9720 35 1 6.6010 5.7377 0.8954 36 1 4.2551 3.6081 2.8026 37 1 6.0277 3.7334 2.9034 38 1 4.8582 5.0603 6.1331 39 1 5.3119 1.7763 -1.9771 40 1 3.7731 2.2710 -2.7245 41 1 5.6017 3.7430 -3.4868 42 1 6.0054 4.1377 -1.7986 43 1 3.3274 4.6975 -3.1507 44 1 4.5991 5.9045 -2.8467 45 1 2.8809 6.0011 -1.0776 46 1 4.4318 5.4434 -0.4053 47 1 2.0891 3.6685 -1.2335 48 1 2.5858 4.0375 0.4359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127455089.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:31 Heat of formation + Delta-G solvation = -27.936844 kcal Electronic energy + Delta-G solvation = -24451.249905 eV Core-core repulsion = 21313.630268 eV Total energy + Delta-G solvation = -3137.619637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54826 -37.19394 -35.69028 -34.10387 -32.27468 -30.75569 -30.32813 -28.15157 -27.29331 -25.24736 -23.24172 -22.78177 -22.73315 -21.84639 -20.57848 -19.57656 -17.69005 -16.64094 -16.15129 -15.60247 -15.41918 -14.81502 -14.52793 -14.35023 -13.67449 -13.36163 -13.31832 -13.19818 -12.96797 -12.55476 -12.35290 -12.22559 -11.96658 -11.86086 -11.60961 -11.42622 -11.28509 -11.16104 -11.01440 -10.84995 -10.63625 -10.49520 -10.37184 -10.20054 -10.12351 -9.66323 -9.65382 -9.61070 -9.43762 -9.06118 -8.82941 -8.34618 -7.07275 -5.97463 -3.97559 3.35210 3.41218 3.44506 3.90435 4.47094 4.82033 4.92389 4.98118 5.09526 5.18408 5.26510 5.27580 5.35465 5.39756 5.42089 5.43481 5.52341 5.68853 5.77035 5.82196 5.85789 5.94724 5.94892 6.01048 6.10923 6.13752 6.19718 6.23560 6.27374 6.33690 6.36006 6.50988 6.59178 6.66469 6.68255 6.84024 6.88690 6.92441 7.14123 7.32954 7.37900 7.50554 7.58668 7.87490 8.19259 8.27261 8.62309 9.10368 9.66024 11.13227 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.006005 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.951904 B = 4661.489595 C = 5651.870585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.065 3.935 5 H 0.076 0.924 6 C -0.152 4.152 7 C 0.068 3.932 8 H 0.058 0.942 9 N -0.513 5.513 10 C 0.027 3.973 11 C 0.186 3.814 12 C -0.501 4.501 13 H 0.062 0.938 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.895 3.105 17 H -0.281 1.281 18 H -0.289 1.289 19 H -0.274 1.274 20 C -0.055 4.055 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.114 4.114 24 C -0.129 4.129 25 C -0.058 4.058 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.041 0.959 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.009 0.991 35 H 0.071 0.929 36 H 0.041 0.959 37 H -0.013 1.013 38 H 0.260 0.740 39 H 0.052 0.948 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.109 0.891 47 H 0.044 0.956 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.882 -7.968 -13.704 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.284 6.284 4 C 0.006 3.994 5 H 0.094 0.906 6 C -0.190 4.190 7 C -0.042 4.042 8 H 0.076 0.924 9 N -0.236 5.236 10 C -0.121 4.121 11 C 0.061 3.939 12 C -0.540 4.540 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.723 3.277 17 H -0.207 1.207 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.056 4.056 21 C -0.139 4.139 22 C -0.160 4.160 23 C -0.152 4.152 24 C -0.167 4.167 25 C -0.095 4.095 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.028 0.972 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.005 0.995 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.127 0.873 47 H 0.063 0.937 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.375 -7.533 -13.675 15.973 hybrid contribution 0.779 -0.011 0.812 1.125 sum -2.596 -7.544 -12.863 15.136 Atomic orbital electron populations 1.21728 0.94196 1.01703 1.03120 1.22424 0.95320 0.84930 0.99433 1.87990 1.20819 1.24989 1.94594 1.23674 0.80652 0.97295 0.97735 0.90620 1.23793 0.99388 0.99301 0.96512 1.22838 0.95009 0.90798 0.95576 0.92376 1.62209 1.30365 1.17343 1.13668 1.22495 0.90008 1.01014 0.98602 1.19909 0.96338 0.97633 0.79994 1.21167 1.48940 0.92516 0.91336 0.91975 1.24964 0.95718 0.97062 0.96885 1.69961 1.51289 1.30899 1.01866 0.86550 0.78197 0.85065 0.77893 1.20717 1.21495 1.19929 1.21967 0.96032 0.94193 0.93401 1.21448 0.99003 0.97157 0.96244 1.21693 0.98972 0.95238 1.00075 1.21480 0.97828 0.97488 0.98356 1.21811 1.02264 0.96777 0.95830 1.20721 0.94935 0.92364 1.01528 0.92066 0.91640 0.91760 0.94063 0.93745 0.92206 0.87389 0.92629 0.97204 0.91020 0.94148 0.99474 0.93086 0.92901 0.92523 0.93304 0.90787 0.93422 0.93133 0.93714 0.87302 0.93722 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.28 37.16 0.38 -1.19 16 2 C 0.06 0.68 6.51 37.16 0.24 0.92 16 3 O -0.37 -5.67 9.49 -35.23 -0.33 -6.00 16 4 C 0.06 0.98 3.74 -26.08 -0.10 0.88 16 5 H 0.08 1.01 7.85 -51.93 -0.41 0.60 16 6 C -0.15 -2.70 5.92 -25.84 -0.15 -2.86 16 7 C 0.07 1.18 2.92 -67.05 -0.20 0.99 16 8 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 9 N -0.51 -10.40 2.10 -235.54 -0.49 -10.89 16 10 C 0.03 0.51 8.12 60.06 0.49 0.99 16 11 C 0.19 4.68 4.37 -4.98 -0.02 4.66 16 12 C -0.50 -13.79 8.58 -34.44 -0.30 -14.08 16 13 H 0.06 1.70 7.42 -52.49 -0.39 1.31 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 16 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 20 C -0.05 -0.85 0.74 -154.37 -0.11 -0.97 16 21 C -0.10 -1.36 5.09 -26.81 -0.14 -1.49 16 22 C -0.12 -1.62 5.85 -26.68 -0.16 -1.78 16 23 C -0.11 -1.58 5.86 -26.76 -0.16 -1.74 16 24 C -0.13 -2.13 5.75 -26.67 -0.15 -2.29 16 25 C -0.06 -0.99 3.99 -26.80 -0.11 -1.10 16 26 H 0.06 0.64 8.14 -51.92 -0.42 0.21 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.11 2.25 5.90 -51.93 -0.31 1.94 16 33 H 0.06 0.89 4.56 -51.93 -0.24 0.66 16 34 H 0.01 0.18 8.11 -51.93 -0.42 -0.24 16 35 H 0.07 1.44 7.21 -51.93 -0.37 1.06 16 36 H 0.04 1.08 5.33 -51.93 -0.28 0.81 16 37 H -0.01 -0.35 8.04 -51.93 -0.42 -0.76 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.05 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.07 1.04 4.49 -51.92 -0.23 0.81 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.11 2.03 4.59 -51.93 -0.24 1.79 16 47 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 48 H 0.07 1.41 7.30 -51.93 -0.38 1.03 16 LS Contribution 351.60 15.07 5.30 5.30 Total: -1.00 -28.75 351.60 -9.10 -37.85 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -8.71 Total: 0.59 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -0.57 Total: -17.60 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.24 Total: -36.82 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.33 Total: -6.00 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.75 -9.10 -37.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127455089.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.912 kcal (2) G-P(sol) polarization free energy of solvation -28.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds