Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47324 * 2 1 4 4 C 1.46494 * 120.00398 * 270.00570 * 3 2 1 5 5 C 1.50705 * 109.46839 * 269.99788 * 4 3 2 6 6 H 1.07998 * 120.00251 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99762 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99946 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99795 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47217 * 59.99583 * 9 7 5 11 11 H 1.48503 * 109.47087 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47199 * 299.99756 * 9 7 5 13 13 C 1.34782 * 119.99223 * 90.00265 * 3 2 1 14 14 O 1.21284 * 119.99622 * 180.02562 * 13 3 2 15 15 C 1.50696 * 120.00377 * 0.02562 * 13 3 2 16 16 C 1.53002 * 109.47039 * 180.02562 * 15 13 3 17 17 H 1.09002 * 109.47067 * 55.00152 * 16 15 13 18 18 C 1.52997 * 109.47143 * 295.00134 * 16 15 13 19 19 C 1.53002 * 109.46817 * 180.02562 * 18 16 15 20 20 C 1.53000 * 109.47233 * 60.00194 * 19 18 16 21 21 C 1.52997 * 109.47060 * 299.99657 * 20 19 18 22 22 C 1.52999 * 109.47317 * 59.99960 * 21 20 19 23 23 C 1.53002 * 109.47628 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.46997 * 60.00177 * 22 21 20 25 25 H 1.09005 * 109.47252 * 59.99372 * 1 2 3 26 26 H 1.08994 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47008 * 299.99360 * 1 2 3 28 28 H 1.09004 * 109.46646 * 240.00715 * 2 1 3 29 29 H 1.08995 * 109.47635 * 120.00981 * 2 1 3 30 30 H 1.08995 * 109.47426 * 29.99378 * 4 3 2 31 31 H 1.09003 * 109.46929 * 149.99987 * 4 3 2 32 32 H 0.97003 * 119.99928 * 180.02562 * 8 7 5 33 33 H 1.08997 * 109.47214 * 60.00159 * 15 13 3 34 34 H 1.08999 * 109.46957 * 300.00180 * 15 13 3 35 35 H 1.08993 * 109.47194 * 59.99677 * 18 16 15 36 36 H 1.09002 * 109.46695 * 299.99691 * 18 16 15 37 37 H 1.08992 * 109.47063 * 299.99823 * 19 18 16 38 38 H 1.09004 * 109.46733 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47398 * 59.99826 * 20 19 18 40 40 H 1.09001 * 109.47194 * 180.02562 * 20 19 18 41 41 H 1.08996 * 109.47853 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47153 * 300.00319 * 21 20 19 43 43 H 1.09001 * 109.47142 * 180.02562 * 23 22 21 44 44 H 1.08996 * 109.46698 * 300.00222 * 23 22 21 45 45 H 1.09002 * 109.46838 * 59.99718 * 23 22 21 46 46 H 1.09000 * 109.46866 * 300.00212 * 24 22 21 47 47 H 1.08996 * 109.47261 * 59.99820 * 24 22 21 48 48 H 1.09001 * 109.47377 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0719 -1.2686 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1494 2.3907 -2.8774 8 7 3.3493 3.1268 -3.6174 9 14 5.9138 2.0977 -3.4163 10 1 6.1417 0.6411 -3.5943 11 1 6.1612 2.7978 -4.7024 12 1 6.8409 2.6209 -2.3811 13 6 2.2430 2.0164 1.1673 14 8 2.6469 3.1600 1.1674 15 6 1.9924 1.3057 2.4724 16 6 2.3232 2.2433 3.6353 17 1 1.7568 3.1685 3.5286 18 6 3.8204 2.5579 3.6268 19 6 4.1512 3.4950 4.7902 20 6 3.7798 2.8186 6.1114 21 6 2.2825 2.5039 6.1199 22 6 1.9516 1.5669 4.9565 23 6 0.4542 1.2527 4.9646 24 6 2.7466 0.2681 5.1058 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8898 30 1 1.5817 1.6879 -2.0283 31 1 2.0955 3.1411 -1.1381 32 1 3.6754 3.5174 -4.4433 33 1 2.6230 0.4185 2.5298 34 1 0.9446 1.0112 2.5302 35 1 4.0852 3.0393 2.6854 36 1 4.3867 1.6327 3.7336 37 1 3.5849 4.4201 4.6838 38 1 5.2180 3.7188 4.7844 39 1 4.3461 1.8934 6.2177 40 1 4.0150 3.4864 6.9401 41 1 2.0177 2.0225 7.0612 42 1 1.7162 3.4292 6.0135 43 1 0.2187 0.5848 4.1361 44 1 0.1892 0.7711 5.9058 45 1 -0.1117 2.1782 4.8581 46 1 3.8132 0.4923 5.0997 47 1 2.4820 -0.2137 6.0470 48 1 2.5112 -0.3993 4.2768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160471014.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = -73.380999 kcal Electronic energy + Delta-G solvation = -23909.891583 eV Core-core repulsion = 20770.301340 eV Total energy + Delta-G solvation = -3139.590243 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.19908 -38.43702 -35.23117 -33.38657 -32.79684 -31.96512 -30.02047 -28.25552 -27.37307 -26.68617 -25.46473 -23.04619 -22.75694 -21.51441 -20.73468 -18.24306 -17.96268 -16.52939 -16.26210 -15.55683 -15.04354 -14.83930 -14.50148 -14.36154 -14.12714 -13.71858 -13.42745 -13.21813 -12.86602 -12.77513 -12.43524 -12.20792 -12.00611 -11.90136 -11.68771 -11.57863 -11.41866 -11.33310 -11.15633 -11.07602 -10.90318 -10.85078 -10.75508 -10.51314 -10.43519 -10.08613 -9.98575 -9.78636 -9.73615 -9.59208 -8.64899 -8.39893 -7.57207 -6.00740 -4.05221 3.33463 3.37840 3.40437 3.55887 4.02857 4.47428 4.68152 4.72651 4.78380 5.14415 5.20895 5.24821 5.33754 5.36804 5.40558 5.40933 5.50135 5.57195 5.65191 5.66262 5.69917 5.74742 5.77536 5.83058 5.91449 5.94362 5.97582 6.02353 6.09132 6.10419 6.14775 6.26554 6.27511 6.30107 6.38756 6.43622 6.51324 6.54026 6.76228 6.87538 7.14534 7.50506 7.63382 7.96386 8.28590 8.53361 8.95225 9.21598 9.59935 11.07216 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019391 B = 0.004892 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.591149 B = 5722.278093 C = 6589.546803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.600 5.600 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.504 3.496 14 O -0.540 6.540 15 C -0.140 4.140 16 C -0.055 4.055 17 H 0.075 0.925 18 C -0.123 4.123 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.105 4.105 22 C -0.061 4.061 23 C -0.144 4.144 24 C -0.146 4.146 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.050 0.950 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.705 -6.683 17.697 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.127 3.873 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.418 6.418 15 C -0.180 4.180 16 C -0.074 4.074 17 H 0.093 0.907 18 C -0.160 4.160 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.061 4.061 23 C -0.202 4.202 24 C -0.203 4.203 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.500 -5.966 17.490 19.020 hybrid contribution 0.913 -0.274 -0.483 1.069 sum -3.587 -6.240 17.007 18.467 Atomic orbital electron populations 1.22219 0.96971 1.01268 1.02254 1.21375 0.93377 0.84450 1.02480 1.48273 1.63907 1.13132 1.07886 1.19221 0.96079 0.93609 0.78368 1.21406 0.96970 1.31746 1.06165 0.92622 1.24927 0.97738 0.94979 0.96435 1.69924 1.35683 1.33504 1.14370 0.86585 0.84968 0.78207 0.77809 1.20301 1.21205 1.20216 1.20410 0.78256 0.86999 0.85197 1.90620 1.45747 1.18233 1.87188 1.21920 1.02802 0.99835 0.93443 1.20852 0.97240 0.97872 0.91392 0.90704 1.21756 0.95095 0.99277 0.99874 1.21493 1.00546 0.98915 0.94406 1.21594 0.96233 1.00406 0.97568 1.21556 0.96345 0.99087 0.97299 1.20550 0.94999 0.95336 0.95174 1.21943 0.95328 1.01494 1.01388 1.22021 1.00638 0.96574 1.01081 0.92139 0.92306 0.93084 0.90206 0.91808 0.95280 0.94003 0.92736 0.89663 0.89609 0.89316 0.92712 0.92161 0.92529 0.91968 0.92718 0.92471 0.92127 0.92321 0.93046 0.92729 0.91956 0.93249 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.24 37.16 0.38 -1.91 16 2 C 0.11 1.74 5.93 -4.04 -0.02 1.72 16 3 N -0.60 -12.72 2.46 -175.06 -0.43 -13.15 16 4 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 5 C -0.52 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.50 10.38 7.39 -10.98 -0.08 10.29 16 14 O -0.54 -13.32 13.54 5.55 0.08 -13.25 16 15 C -0.14 -2.07 3.01 -27.88 -0.08 -2.16 16 16 C -0.05 -0.77 1.14 -90.62 -0.10 -0.87 16 17 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 18 C -0.12 -1.85 4.67 -26.73 -0.12 -1.98 16 19 C -0.12 -1.49 5.92 -26.73 -0.16 -1.65 16 20 C -0.12 -1.28 5.65 -26.73 -0.15 -1.43 16 21 C -0.11 -1.08 4.73 -26.73 -0.13 -1.21 16 22 C -0.06 -0.66 0.54 -154.50 -0.08 -0.74 16 23 C -0.14 -1.42 8.13 37.16 0.30 -1.12 16 24 C -0.15 -1.47 7.43 37.16 0.28 -1.20 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 7.22 -51.93 -0.38 0.28 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.06 0.87 6.44 -51.93 -0.33 0.53 16 30 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.09 1.17 5.97 -51.93 -0.31 0.86 16 34 H 0.09 1.11 5.22 -51.93 -0.27 0.84 16 35 H 0.09 1.70 5.95 -51.93 -0.31 1.39 16 36 H 0.05 0.78 6.43 -51.93 -0.33 0.44 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.57 6.32 -51.93 -0.33 0.24 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.06 0.56 6.54 -51.93 -0.34 0.22 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -31.70 355.31 -8.30 -40.00 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.59 Total: -0.45 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -0.43 Total: -9.41 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.31 Total: -39.29 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.70 -8.30 -40.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160471014.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.382 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds