Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46494 * 109.47472 * 2 1 4 4 C 1.46501 * 119.99775 * 270.00161 * 3 2 1 5 5 C 1.50699 * 109.47138 * 269.99667 * 4 3 2 6 6 H 1.08002 * 119.99925 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00154 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00063 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 119.99947 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47385 * 89.99703 * 9 7 5 11 11 H 1.48509 * 109.47106 * 210.00133 * 9 7 5 12 12 H 1.48502 * 109.47294 * 329.99643 * 9 7 5 13 13 C 1.34780 * 120.00310 * 90.00139 * 3 2 1 14 14 O 1.21280 * 119.99829 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99470 * 359.97438 * 13 3 2 16 16 C 1.53006 * 109.46610 * 180.02562 * 15 13 3 17 17 H 1.08993 * 109.46955 * 305.00306 * 16 15 13 18 18 C 1.52997 * 109.47127 * 65.00295 * 16 15 13 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46972 * 299.99541 * 19 18 16 21 21 C 1.53002 * 109.47128 * 60.00146 * 20 19 18 22 22 C 1.52999 * 109.46626 * 184.99834 * 16 15 13 23 23 C 1.52997 * 109.47592 * 300.00035 * 22 16 15 24 24 C 1.52997 * 109.46991 * 60.00378 * 22 16 15 25 25 H 1.09003 * 109.46880 * 300.00605 * 1 2 3 26 26 H 1.09004 * 109.47160 * 59.99549 * 1 2 3 27 27 H 1.08993 * 109.47512 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46940 * 239.99934 * 2 1 3 29 29 H 1.09000 * 109.46701 * 120.00301 * 2 1 3 30 30 H 1.08995 * 109.47702 * 30.00045 * 4 3 2 31 31 H 1.09003 * 109.47199 * 150.00294 * 4 3 2 32 32 H 0.96995 * 119.99918 * 179.97438 * 8 7 5 33 33 H 1.08992 * 109.47201 * 60.00448 * 15 13 3 34 34 H 1.08997 * 109.47016 * 300.00044 * 15 13 3 35 35 H 1.09001 * 109.47289 * 299.99953 * 18 16 15 36 36 H 1.09004 * 109.47261 * 59.99697 * 18 16 15 37 37 H 1.08996 * 109.47134 * 180.02562 * 19 18 16 38 38 H 1.08992 * 109.47534 * 59.99520 * 19 18 16 39 39 H 1.08996 * 109.47407 * 300.00487 * 20 19 18 40 40 H 1.09002 * 109.47070 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.47600 * 179.97438 * 21 20 19 42 42 H 1.09004 * 109.47006 * 59.99907 * 21 20 19 43 43 H 1.09002 * 109.47045 * 60.00253 * 23 22 16 44 44 H 1.09001 * 109.47375 * 180.02562 * 23 22 16 45 45 H 1.09000 * 109.47140 * 300.00346 * 23 22 16 46 46 H 1.09000 * 109.47611 * 59.99933 * 24 22 16 47 47 H 1.09001 * 109.47289 * 179.97438 * 24 22 16 48 48 H 1.09002 * 109.47153 * 299.99445 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0962 7 6 4.1495 2.3903 -2.8775 8 7 5.3914 2.1832 -3.2574 9 14 3.0136 3.4369 -3.9281 10 1 3.1174 4.8568 -3.5059 11 1 3.4067 3.3147 -5.3550 12 1 1.6137 2.9712 -3.7587 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9914 1.3063 2.4723 16 6 2.3224 2.2439 3.6352 17 1 3.3441 2.6082 3.5286 18 6 1.3548 3.4290 3.6261 19 6 1.6862 4.3669 4.7886 20 6 1.5510 3.6083 6.1104 21 6 2.5186 2.4231 6.1195 22 6 2.1867 1.4848 4.9566 23 6 0.7525 0.9734 5.1062 24 6 3.1543 0.2997 4.9657 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.5818 1.6877 -2.0284 31 1 2.0957 3.1410 -1.1385 32 1 5.7174 2.5736 -4.0833 33 1 2.6212 0.4186 2.5302 34 1 0.9433 1.0126 2.5298 35 1 1.4514 3.9697 2.6846 36 1 0.3330 3.0646 3.7326 37 1 0.9966 5.2109 4.7824 38 1 2.7079 4.7312 4.6817 39 1 0.5293 3.2439 6.2174 40 1 1.7867 4.2766 6.9386 41 1 2.4227 1.8828 7.0613 42 1 3.5404 2.7874 6.0125 43 1 0.5167 0.3055 4.2777 44 1 0.6558 0.4331 6.0479 45 1 0.0632 1.8178 5.0997 46 1 4.1761 0.6640 4.8592 47 1 3.0580 -0.2408 5.9073 48 1 2.9185 -0.3682 4.1372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160471147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = -68.905715 kcal Electronic energy + Delta-G solvation = -23921.651682 eV Core-core repulsion = 20782.255502 eV Total energy + Delta-G solvation = -3139.396180 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 5.48 seconds Orbital eigenvalues (eV) -40.25691 -38.54415 -35.35288 -33.42198 -32.75235 -32.01937 -30.27005 -28.51490 -27.42653 -26.98092 -25.55070 -22.94148 -22.70581 -21.44839 -20.75288 -18.24603 -18.04123 -16.89061 -16.48844 -15.51843 -15.14653 -15.06320 -14.45042 -14.34286 -14.08992 -13.73463 -13.46024 -13.34723 -13.02025 -12.63131 -12.58039 -12.44933 -12.12593 -11.87385 -11.85233 -11.74801 -11.49897 -11.36466 -11.30725 -11.20277 -10.94584 -10.91874 -10.66131 -10.53302 -10.47721 -10.14424 -10.02737 -9.84682 -9.76761 -9.49007 -8.78140 -8.56341 -7.64116 -6.06295 -4.04424 3.30563 3.36545 3.38415 3.45603 3.89877 4.41771 4.65015 4.69574 4.74434 5.09502 5.16592 5.17347 5.28269 5.30487 5.36600 5.38056 5.45116 5.54658 5.56855 5.63116 5.66112 5.67851 5.72786 5.79422 5.88186 5.91047 5.95144 5.99204 6.03913 6.05896 6.13208 6.17859 6.22443 6.25435 6.35811 6.38092 6.43579 6.48619 6.71736 6.74976 6.77196 7.00383 7.42926 7.65051 8.34899 8.50942 8.96815 9.09266 9.54697 11.07274 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.004630 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.412927 B = 6046.071005 C = 6403.506776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.216 3.784 5 C -0.526 4.526 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.539 6.539 15 C -0.139 4.139 16 C -0.057 4.057 17 H 0.077 0.923 18 C -0.121 4.121 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.060 4.060 23 C -0.146 4.146 24 C -0.146 4.146 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.027 0.973 31 H 0.035 0.965 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.051 0.949 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 -4.089 17.153 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.416 6.416 15 C -0.179 4.179 16 C -0.076 4.076 17 H 0.096 0.904 18 C -0.158 4.158 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.144 4.144 22 C -0.060 4.060 23 C -0.203 4.203 24 C -0.203 4.203 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.694 -3.441 16.979 20.359 hybrid contribution -0.393 0.383 -0.748 0.928 sum -11.087 -3.058 16.232 19.893 Atomic orbital electron populations 1.22231 0.96917 1.01462 1.02163 1.21408 0.93282 0.84052 1.02955 1.47961 1.64305 1.13301 1.07148 1.19608 0.97153 0.93351 0.80347 1.21345 0.95398 1.32680 1.07029 0.90843 1.24858 0.94971 0.95838 0.97372 1.69899 1.15160 1.45128 1.23572 0.86853 0.81483 0.81625 0.79729 1.19948 1.21121 1.19117 1.20442 0.77950 0.86973 0.85182 1.90620 1.45610 1.18237 1.87169 1.21907 1.02960 0.99862 0.93153 1.20870 1.00901 0.94343 0.91439 0.90439 1.21739 0.97990 0.96371 0.99722 1.21494 1.01657 0.97810 0.94446 1.21588 0.99674 0.96983 0.97519 1.21575 0.99469 0.95989 0.97333 1.20549 0.95430 0.94946 0.95079 1.22017 0.96169 1.00942 1.01139 1.21951 0.99280 0.97638 1.01401 0.92973 0.92330 0.92087 0.89951 0.91437 0.95501 0.94710 0.92624 0.89314 0.89624 0.89676 0.92776 0.92593 0.92036 0.92012 0.92674 0.92410 0.92015 0.92564 0.93202 0.92055 0.92566 0.93007 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.68 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.22 2.46 -175.06 -0.43 -12.65 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.51 10.17 7.39 -10.98 -0.08 10.09 16 14 O -0.54 -12.94 13.54 5.56 0.08 -12.87 16 15 C -0.14 -2.01 3.01 -27.88 -0.08 -2.09 16 16 C -0.06 -0.78 1.14 -90.62 -0.10 -0.88 16 17 H 0.08 1.27 7.95 -51.93 -0.41 0.85 16 18 C -0.12 -1.68 4.67 -26.73 -0.12 -1.81 16 19 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 20 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 21 C -0.11 -1.08 4.74 -26.70 -0.13 -1.21 16 22 C -0.06 -0.64 0.54 -154.48 -0.08 -0.73 16 23 C -0.15 -1.39 7.43 37.16 0.28 -1.11 16 24 C -0.15 -1.50 8.13 37.16 0.30 -1.19 16 25 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 29 H 0.07 0.89 6.44 -51.93 -0.33 0.56 16 30 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 31 H 0.03 0.92 6.85 -51.93 -0.36 0.56 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.09 1.19 5.43 -51.93 -0.28 0.91 16 34 H 0.09 1.07 5.75 -51.93 -0.30 0.77 16 35 H 0.08 1.48 5.95 -51.93 -0.31 1.17 16 36 H 0.05 0.68 6.43 -51.93 -0.33 0.35 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.59 6.43 -51.93 -0.33 0.26 16 40 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.52 6.54 -51.93 -0.34 0.18 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.59 4.81 -51.93 -0.25 0.34 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 LS Contribution 351.72 15.07 5.30 5.30 Total: -1.00 -32.72 351.72 -7.95 -40.67 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -8.56 Total: -0.16 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -0.44 Total: -10.25 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.34 Total: -39.86 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.87 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.72 -7.95 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160471147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.232 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.48 seconds