Wall clock time and date at job start Tue Mar 31 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46763 * 2 1 4 4 C 1.46504 * 119.99952 * 269.99529 * 3 2 1 5 5 C 1.50696 * 109.47094 * 270.00283 * 4 3 2 6 6 H 1.07995 * 120.00531 * 359.97438 * 5 4 3 7 7 C 1.37881 * 119.99544 * 180.02562 * 5 4 3 8 8 N 1.31518 * 119.99435 * 180.02562 * 7 5 4 9 9 Si 1.86794 * 120.00342 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46854 * 90.00228 * 9 7 5 11 11 H 1.48502 * 109.47131 * 210.00184 * 9 7 5 12 12 H 1.48500 * 109.47111 * 330.00138 * 9 7 5 13 13 C 1.34779 * 120.00175 * 90.00241 * 3 2 1 14 14 O 1.21281 * 120.00027 * 179.97438 * 13 3 2 15 15 C 1.50705 * 119.99839 * 359.97438 * 13 3 2 16 16 C 1.52995 * 109.46702 * 180.02562 * 15 13 3 17 17 C 1.53002 * 109.46925 * 175.00114 * 16 15 13 18 18 C 1.52997 * 109.47415 * 180.02562 * 17 16 15 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 16 20 20 C 1.52997 * 109.47164 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47127 * 300.00163 * 19 18 17 22 22 C 1.52999 * 109.46626 * 59.99702 * 19 18 17 23 23 C 1.52996 * 109.47577 * 295.00088 * 16 15 13 24 24 H 1.08996 * 109.47177 * 300.00235 * 1 2 3 25 25 H 1.09001 * 109.47226 * 60.00309 * 1 2 3 26 26 H 1.08998 * 109.46807 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47177 * 239.99765 * 2 1 3 28 28 H 1.09001 * 109.47226 * 119.99691 * 2 1 3 29 29 H 1.09001 * 109.46835 * 30.00276 * 4 3 2 30 30 H 1.09004 * 109.47046 * 150.00340 * 4 3 2 31 31 H 0.97008 * 119.99791 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.46534 * 60.00683 * 15 13 3 33 33 H 1.08991 * 109.47221 * 300.00712 * 15 13 3 34 34 H 1.08996 * 109.47575 * 55.00658 * 16 15 13 35 35 H 1.09000 * 109.46986 * 60.00086 * 17 16 15 36 36 H 1.09001 * 109.47601 * 300.00809 * 17 16 15 37 37 H 1.09001 * 109.46922 * 180.02562 * 18 17 16 38 38 H 1.09000 * 109.47140 * 59.99976 * 18 17 16 39 39 H 1.09001 * 109.47375 * 59.99966 * 20 19 18 40 40 H 1.09002 * 109.46777 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47140 * 299.99948 * 20 19 18 42 42 H 1.09004 * 109.47261 * 59.99697 * 21 19 18 43 43 H 1.09002 * 109.47153 * 179.97438 * 21 19 18 44 44 H 1.09001 * 109.47289 * 299.99953 * 21 19 18 45 45 H 1.09000 * 109.47160 * 60.00369 * 22 19 18 46 46 H 1.09002 * 109.46719 * 180.02562 * 22 19 18 47 47 H 1.09000 * 109.47054 * 300.00355 * 23 16 15 48 48 H 1.09001 * 109.46997 * 60.00088 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8351 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1493 2.3906 -2.8774 8 7 5.3913 2.1835 -3.2572 9 14 3.0131 3.4360 -3.9287 10 1 3.1157 4.8561 -3.5068 11 1 3.4068 3.3137 -5.3554 12 1 1.6135 2.9692 -3.7597 13 6 2.2429 2.0166 1.1672 14 8 2.6476 3.1600 1.1672 15 6 1.9913 1.3064 2.4723 16 6 2.3222 2.2440 3.6352 17 6 1.9497 1.5688 4.9566 18 6 2.2800 2.5065 6.1195 19 6 3.7774 2.8208 6.1118 20 6 4.1076 3.7591 7.2743 21 6 4.5718 1.5220 6.2625 22 6 4.1498 3.4960 4.7903 23 6 3.8197 2.5577 3.6272 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1411 -1.1384 31 1 5.7174 2.5740 -4.0832 32 1 2.6213 0.4188 2.5302 33 1 0.9433 1.0125 2.5299 34 1 1.7565 3.1695 3.5280 35 1 2.5153 0.6432 5.0638 36 1 0.8828 1.3451 4.9624 37 1 2.0149 2.0252 7.0609 38 1 1.7140 3.4319 6.0121 39 1 3.8421 3.2785 8.2159 40 1 5.1743 3.9833 7.2684 41 1 3.5416 4.6844 7.1664 42 1 4.3365 0.8538 5.4340 43 1 5.6386 1.7458 6.2565 44 1 4.3064 1.0409 7.2039 45 1 3.5838 4.4213 4.6829 46 1 5.2167 3.7195 4.7846 47 1 4.3853 1.6322 3.7344 48 1 4.0851 3.0387 2.6858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160474006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:32 Heat of formation + Delta-G solvation = -73.340768 kcal Electronic energy + Delta-G solvation = -23484.568801 eV Core-core repulsion = 20344.980302 eV Total energy + Delta-G solvation = -3139.588498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.96161 -38.68415 -35.43315 -34.06270 -32.66098 -30.65641 -30.32724 -29.36510 -27.44108 -27.35486 -24.71736 -22.94029 -22.59413 -22.11206 -20.32398 -18.39318 -18.12665 -16.88859 -16.32240 -15.54550 -15.23090 -14.81796 -14.76019 -14.06920 -14.00089 -13.85818 -13.43391 -13.38174 -13.11336 -12.58978 -12.48722 -12.27507 -12.22406 -11.90523 -11.81027 -11.79479 -11.57682 -11.45796 -11.27413 -11.10353 -10.93322 -10.81705 -10.73887 -10.54549 -10.47295 -10.14466 -9.99290 -9.95452 -9.75907 -9.51121 -8.77876 -8.56508 -7.65074 -6.06528 -4.04689 3.30461 3.36455 3.38350 3.44434 3.89468 4.41612 4.66466 4.69510 4.78430 4.99890 5.13496 5.24753 5.25552 5.29100 5.36311 5.43059 5.48880 5.57457 5.60786 5.66286 5.67978 5.71566 5.74160 5.78131 5.84705 5.86264 5.96494 5.97118 6.03846 6.05754 6.10400 6.17861 6.20733 6.29124 6.35954 6.40434 6.44915 6.51048 6.74741 6.76481 6.86690 7.00097 7.42477 7.64742 8.34156 8.50596 8.96508 9.08351 9.54444 11.06962 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021138 B = 0.004322 C = 0.003882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.321832 B = 6476.222060 C = 7211.177896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.216 3.784 5 C -0.526 4.526 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.507 3.493 14 O -0.538 6.538 15 C -0.136 4.136 16 C -0.067 4.067 17 C -0.116 4.116 18 C -0.105 4.105 19 C -0.067 4.067 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.122 4.122 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.027 0.973 30 H 0.035 0.965 31 H 0.264 0.736 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.048 0.952 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 -3.707 17.939 20.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.327 5.327 4 C 0.095 3.905 5 C -0.565 4.565 6 H 0.092 0.908 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.191 1.191 13 C 0.295 3.705 14 O -0.416 6.416 15 C -0.176 4.176 16 C -0.086 4.086 17 C -0.153 4.153 18 C -0.142 4.142 19 C -0.067 4.067 20 C -0.198 4.198 21 C -0.201 4.201 22 C -0.142 4.142 23 C -0.160 4.160 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.889 -3.058 17.766 19.678 hybrid contribution -0.445 0.403 -0.745 0.957 sum -8.334 -2.655 17.021 19.137 Atomic orbital electron populations 1.22230 0.96915 1.01471 1.02160 1.21414 0.93284 0.84024 1.02995 1.47970 1.64284 1.13310 1.07153 1.19612 0.97168 0.93350 0.80331 1.21343 0.95375 1.32713 1.07035 0.90818 1.24859 0.94973 0.95834 0.97370 1.69905 1.15149 1.45103 1.23569 0.86854 0.81490 0.81624 0.79739 1.19944 1.21120 1.19119 1.20417 0.77992 0.86972 0.85164 1.90622 1.45496 1.18311 1.87157 1.21793 1.02648 0.99830 0.93371 1.20868 0.97519 0.98193 0.92047 1.21649 1.00504 0.98767 0.94416 1.21550 0.95282 0.99548 0.97856 1.20562 0.95236 0.95503 0.95376 1.21867 1.01277 0.99125 0.97538 1.21964 0.99592 0.97120 1.01416 1.21562 1.00688 0.98529 0.93389 1.21762 0.94897 0.99498 0.99804 0.92959 0.92348 0.92079 0.89947 0.91375 0.95501 0.94707 0.92627 0.89625 0.89838 0.90740 0.91772 0.92388 0.92449 0.92133 0.93070 0.92835 0.92851 0.91801 0.92978 0.93266 0.92154 0.92379 0.92587 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.67 5.93 -4.04 -0.02 1.65 16 3 N -0.60 -12.21 2.46 -175.05 -0.43 -12.64 16 4 C 0.22 5.33 4.23 -5.19 -0.02 5.31 16 5 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.91 16 7 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 8 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 13 C 0.51 10.16 7.39 -10.98 -0.08 10.08 16 14 O -0.54 -12.91 13.54 5.56 0.08 -12.83 16 15 C -0.14 -1.96 3.73 -27.88 -0.10 -2.07 16 16 C -0.07 -0.92 1.84 -90.62 -0.17 -1.09 16 17 C -0.12 -1.23 4.93 -26.73 -0.13 -1.37 16 18 C -0.10 -1.06 4.73 -26.73 -0.13 -1.19 16 19 C -0.07 -0.70 0.77 -154.51 -0.12 -0.82 16 20 C -0.14 -1.32 8.47 37.16 0.31 -1.00 16 21 C -0.14 -1.45 7.78 37.16 0.29 -1.16 16 22 C -0.10 -1.35 4.73 -26.71 -0.13 -1.47 16 23 C -0.12 -1.84 4.67 -26.71 -0.12 -1.97 16 24 H 0.05 0.63 7.22 -51.93 -0.37 0.25 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 28 H 0.07 0.90 6.44 -51.93 -0.33 0.56 16 29 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 30 H 0.03 0.92 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 32 H 0.09 1.14 7.40 -51.93 -0.38 0.75 16 33 H 0.08 1.02 7.18 -51.93 -0.37 0.64 16 34 H 0.07 1.14 7.96 -51.93 -0.41 0.73 16 35 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.81 6.43 -51.93 -0.33 0.47 16 48 H 0.09 1.71 5.95 -51.93 -0.31 1.40 16 LS Contribution 358.97 15.07 5.41 5.41 Total: -1.00 -32.60 358.97 -8.24 -40.84 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.91 Total: -0.36 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -0.48 Total: -10.43 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.34 Total: -39.78 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.83 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.60 -8.24 -40.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160474006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.503 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds