Wall clock time and date at job start Tue Mar 31 2020 06:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 5 5 C 1.50700 * 109.47208 * 64.99916 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47306 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.47245 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00092 * 359.97438 * 11 10 9 13 13 C 1.37882 * 120.00154 * 180.02562 * 11 10 9 14 14 N 1.31511 * 119.99696 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99906 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47329 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.47077 * 119.99763 * 15 13 11 18 18 H 1.48504 * 109.47058 * 239.99517 * 15 13 11 19 19 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 20 20 C 1.53004 * 109.47023 * 300.00027 * 19 2 1 21 21 C 1.52993 * 109.47345 * 180.02562 * 20 19 2 22 22 C 1.52996 * 109.47180 * 59.99676 * 21 20 19 23 23 C 1.52996 * 109.47351 * 300.00155 * 22 21 20 24 24 C 1.52990 * 109.47183 * 180.02562 * 19 2 1 25 25 H 1.08996 * 109.47118 * 300.00234 * 1 2 3 26 26 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 27 27 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46730 * 304.99822 * 4 2 1 29 29 H 1.08998 * 109.46846 * 185.00367 * 4 2 1 30 30 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 31 31 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 32 32 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 33 33 H 1.09009 * 109.47378 * 299.99899 * 9 8 7 34 34 H 1.08993 * 109.47209 * 59.99808 * 9 8 7 35 35 H 1.08995 * 109.47215 * 299.99822 * 10 9 8 36 36 H 1.09001 * 109.47513 * 60.00266 * 10 9 8 37 37 H 0.97008 * 120.00088 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.47209 * 59.99320 * 19 2 1 39 39 H 1.09004 * 109.46938 * 300.00365 * 20 19 2 40 40 H 1.09005 * 109.47154 * 59.99567 * 20 19 2 41 41 H 1.09005 * 109.47025 * 299.99377 * 21 20 19 42 42 H 1.08998 * 109.47502 * 180.02562 * 21 20 19 43 43 H 1.09000 * 109.47022 * 180.02562 * 22 21 20 44 44 H 1.08997 * 109.47070 * 60.00455 * 22 21 20 45 45 H 1.08997 * 109.47278 * 300.00172 * 23 22 21 46 46 H 1.09000 * 109.46998 * 179.97438 * 23 22 21 47 47 H 1.08997 * 109.47517 * 299.99447 * 24 19 2 48 48 H 1.08997 * 109.47390 * 60.00031 * 24 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9801 -0.3944 -3.7005 8 6 1.5874 0.3591 -4.8938 9 6 2.0931 -0.3646 -6.1433 10 6 1.6834 0.4227 -7.3896 11 6 2.1810 -0.2906 -8.6204 12 1 2.7345 -1.2129 -8.5234 13 6 1.9306 0.2349 -9.8703 14 7 1.2571 1.3583 -9.9884 15 14 2.5480 -0.6488 -11.3958 16 1 3.2729 -1.8812 -10.9947 17 1 1.3950 -1.0109 -12.2588 18 1 3.4674 0.2435 -12.1467 19 6 2.0401 -0.7213 1.2492 20 6 1.5300 -0.0002 2.4985 21 6 2.0405 -0.7210 3.7476 22 6 3.5705 -0.7205 3.7473 23 6 4.0805 -1.4417 2.4981 24 6 3.5700 -0.7208 1.2495 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7198 -1.2952 29 1 3.1264 -0.7994 -1.2056 30 1 2.4841 -1.2183 -3.7911 31 1 0.5009 0.4368 -4.9333 32 1 2.0217 1.3580 -4.8522 33 1 3.1797 -0.4419 -6.1037 34 1 1.6591 -1.3635 -6.1852 35 1 0.5970 0.5003 -7.4295 36 1 2.1178 1.4215 -7.3476 37 1 1.0806 1.7279 -10.8678 38 1 1.6766 -1.7490 1.2491 39 1 1.8933 1.0276 2.4985 40 1 0.4400 -0.0001 2.4985 41 1 1.6775 -1.7489 3.7479 42 1 1.6768 -0.2076 4.6377 43 1 3.9342 -1.2345 4.6371 44 1 3.9335 0.3072 3.7472 45 1 3.7175 -2.4695 2.4982 46 1 5.1705 -1.4409 2.4977 47 1 3.9337 -1.2343 0.3595 48 1 3.9330 0.3070 1.2498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171500385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:12 Heat of formation + Delta-G solvation = -99.360792 kcal Electronic energy + Delta-G solvation = -21885.658143 eV Core-core repulsion = 18744.941331 eV Total energy + Delta-G solvation = -3140.716811 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.03819 -38.82379 -35.62675 -34.69057 -33.30242 -31.39293 -31.10437 -29.75505 -28.09449 -26.34045 -23.78777 -22.88164 -22.55020 -20.74526 -20.46600 -19.98640 -19.53028 -16.99201 -16.43494 -15.76769 -15.62480 -15.30698 -14.82992 -14.47792 -14.40218 -14.16997 -14.04891 -13.73252 -13.41984 -13.17654 -12.63707 -12.40723 -12.26564 -12.04863 -11.82268 -11.71785 -11.58959 -11.38715 -11.30022 -11.19024 -10.91827 -10.84668 -10.73047 -10.60997 -10.57127 -10.24978 -10.08199 -9.86780 -9.73628 -9.29926 -9.09174 -8.71772 -8.38158 -6.02481 -4.05518 2.85472 3.29358 3.36713 3.39953 3.46772 4.37310 4.39185 4.43804 4.48194 4.73633 4.83496 4.89163 5.05458 5.09075 5.21306 5.22504 5.25923 5.33310 5.34070 5.40188 5.45174 5.58509 5.65285 5.68700 5.73727 5.75757 5.79379 5.84927 5.88183 5.93237 5.94253 5.99612 6.13081 6.15043 6.17522 6.35545 6.40825 6.56697 6.60616 6.85702 7.01384 7.63325 7.75800 7.77052 7.96451 8.37252 8.47689 9.01425 9.58686 11.08830 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.042855 B = 0.002279 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.212468 B =12285.597999 C =12716.884832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.069 4.069 3 H 0.077 0.923 4 C -0.141 4.141 5 C 0.506 3.494 6 O -0.543 6.543 7 N -0.729 5.729 8 C 0.116 3.884 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.081 4.081 20 C -0.116 4.116 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.397 0.603 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.500 -6.612 27.307 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.088 4.088 3 H 0.096 0.904 4 C -0.181 4.181 5 C 0.292 3.708 6 O -0.420 6.420 7 N -0.380 5.380 8 C -0.007 4.007 9 C -0.159 4.159 10 C -0.015 4.015 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.100 4.100 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.157 4.157 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.231 0.769 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.971 -5.736 27.241 27.996 hybrid contribution 0.590 -0.853 -1.058 1.482 sum 3.560 -6.589 26.183 27.233 Atomic orbital electron populations 1.22002 0.94786 1.01295 1.03097 1.20897 0.96440 0.99691 0.91733 0.90445 1.21845 1.02888 1.00219 0.93110 1.20693 0.79462 0.85871 0.84770 1.90659 1.39910 1.24773 1.86698 1.46269 1.57524 1.27814 1.06386 1.21613 1.00047 0.95545 0.83454 1.21880 1.00049 0.99567 0.94355 1.19036 0.97024 0.95304 0.90097 1.21244 1.35208 1.08485 0.91047 0.92601 1.25043 0.95258 0.95029 0.99234 1.69978 1.40192 1.19504 1.23586 0.86522 0.78582 0.79699 0.83096 1.19764 1.20996 1.21000 1.21210 0.95051 0.99593 0.94142 1.21631 1.00599 0.99360 0.93721 1.21536 0.95603 1.00697 0.97865 1.21541 0.95832 1.00721 0.97691 1.21523 1.00040 0.99379 0.94743 1.21678 0.95361 1.00962 0.97681 0.92793 0.90557 0.93538 0.89197 0.88899 0.76926 0.91907 0.91914 0.92787 0.92783 0.96294 0.96292 0.92981 0.91248 0.91987 0.91584 0.92163 0.92279 0.92395 0.92089 0.92117 0.92208 0.91693 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.58 37.16 0.32 -1.34 16 2 C -0.07 -0.68 1.62 -90.62 -0.15 -0.83 16 3 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 4 C -0.14 -1.38 4.96 -27.88 -0.14 -1.52 16 5 C 0.51 7.19 7.55 -10.98 -0.08 7.10 16 6 O -0.54 -9.79 13.96 5.55 0.08 -9.71 16 7 N -0.73 -10.30 5.56 -60.30 -0.33 -10.64 16 8 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 9 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 10 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 11 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.08 -0.63 1.78 -90.62 -0.16 -0.80 16 20 C -0.12 -0.87 4.85 -26.73 -0.13 -1.00 16 21 C -0.12 -0.79 5.92 -26.74 -0.16 -0.95 16 22 C -0.12 -0.78 5.92 -26.74 -0.16 -0.93 16 23 C -0.12 -0.78 5.92 -26.76 -0.16 -0.94 16 24 C -0.12 -0.87 4.85 -26.76 -0.13 -1.00 16 25 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 26 H 0.08 1.05 5.95 -51.93 -0.31 0.74 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.75 8.14 -51.92 -0.42 0.32 16 29 H 0.09 0.76 6.17 -51.93 -0.32 0.44 16 30 H 0.40 4.47 8.47 -40.82 -0.35 4.13 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.45 6.32 -51.93 -0.33 0.12 16 48 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 368.31 15.07 5.55 5.55 Total: -1.00 -31.47 368.31 -9.76 -41.24 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -9.11 Total: -1.11 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.66 Total: -15.66 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.40 Total: -36.81 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.47 -9.76 -41.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171500385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.123 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds