Wall clock time and date at job start Tue Mar 31 2020 05:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46795 * 2 1 4 4 C 1.53002 * 109.46995 * 119.99921 * 2 1 3 5 5 C 1.52996 * 109.47201 * 295.00078 * 4 2 1 6 6 C 1.53002 * 109.46891 * 175.00241 * 5 4 2 7 7 C 1.52996 * 109.46891 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47328 * 299.99597 * 7 6 5 9 9 C 1.52997 * 109.47060 * 60.00126 * 8 7 6 10 10 C 1.52997 * 109.46975 * 294.99833 * 5 4 2 11 11 C 1.50698 * 109.46986 * 240.00047 * 2 1 3 12 12 O 1.21279 * 120.00078 * 240.00279 * 11 2 1 13 13 N 1.34776 * 119.99779 * 59.99975 * 11 2 1 14 14 C 1.46506 * 119.99739 * 179.97438 * 13 11 2 15 15 C 1.52999 * 109.46962 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.47016 * 180.02562 * 15 14 13 17 17 C 1.50699 * 109.47028 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00239 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99893 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99795 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47093 * 59.99765 * 21 19 17 23 23 H 1.48501 * 109.47044 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46899 * 299.99952 * 21 19 17 25 25 H 1.09000 * 109.47132 * 300.00077 * 1 2 3 26 26 H 1.09005 * 109.47303 * 59.99533 * 1 2 3 27 27 H 1.08995 * 109.47579 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46646 * 174.99722 * 4 2 1 29 29 H 1.09001 * 109.46843 * 55.00007 * 4 2 1 30 30 H 1.09001 * 109.47372 * 55.00205 * 5 4 2 31 31 H 1.08992 * 109.47056 * 59.99654 * 6 5 4 32 32 H 1.09004 * 109.47006 * 299.99770 * 6 5 4 33 33 H 1.09004 * 109.47368 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47372 * 59.99964 * 7 6 5 35 35 H 1.09002 * 109.47398 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47194 * 300.00476 * 8 7 6 37 37 H 1.08998 * 109.47533 * 59.99948 * 9 8 7 38 38 H 1.08996 * 109.47853 * 180.02562 * 9 8 7 39 39 H 1.09001 * 109.47375 * 300.00370 * 10 5 4 40 40 H 1.09000 * 109.47140 * 60.00388 * 10 5 4 41 41 H 0.96999 * 120.00637 * 0.02562 * 13 11 2 42 42 H 1.09001 * 109.47269 * 300.00374 * 14 13 11 43 43 H 1.08995 * 109.46780 * 60.00533 * 14 13 11 44 44 H 1.09001 * 109.47277 * 300.00177 * 15 14 13 45 45 H 1.08992 * 109.47461 * 60.00189 * 15 14 13 46 46 H 1.09002 * 109.46956 * 299.99465 * 16 15 14 47 47 H 1.08992 * 109.47145 * 59.99635 * 16 15 14 48 48 H 0.97004 * 119.99713 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 0.0689 2.4953 6 6 2.0354 -0.7136 3.7477 7 6 1.6312 0.0768 4.9937 8 6 2.3413 1.4320 4.9906 9 6 1.9412 2.2146 3.7383 10 6 2.3449 1.4243 2.4925 11 6 2.0323 -0.7104 -1.2305 12 8 2.7295 -1.6965 -1.1192 13 7 1.7067 -0.2499 -2.4545 14 6 2.1954 -0.9402 -3.6508 15 6 1.6858 -0.2186 -4.9000 16 6 2.1958 -0.9399 -6.1492 17 6 1.6943 -0.2288 -7.3797 18 1 1.0737 0.6494 -7.2806 19 6 2.0280 -0.6995 -8.6320 20 7 2.7842 -1.7687 -8.7526 21 14 1.4058 0.1815 -10.1572 22 1 1.9007 1.5816 -10.1565 23 1 1.9009 -0.5185 -11.3697 24 1 -0.0792 0.1814 -10.1577 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1263 -0.7995 1.2055 29 1 1.6053 -1.7198 1.2951 30 1 0.5562 0.2236 2.4929 31 1 3.1143 -0.8684 3.7501 32 1 1.5298 -1.6793 3.7497 33 1 1.9158 -0.4808 5.8860 34 1 0.5523 0.2319 4.9915 35 1 2.0537 1.9950 5.8786 36 1 3.4202 1.2769 4.9929 37 1 0.8624 2.3697 3.7360 38 1 2.4474 3.1799 3.7357 39 1 3.4238 1.2696 2.4949 40 1 2.0598 1.9818 1.6003 41 1 1.1493 0.5390 -2.5436 42 1 3.2855 -0.9398 -3.6506 43 1 1.8324 -1.9679 -3.6509 44 1 0.5958 -0.2186 -4.9003 45 1 2.0491 0.8090 -4.8996 46 1 3.2858 -0.9402 -6.1491 47 1 1.8322 -1.9674 -6.1494 48 1 3.0192 -2.0996 -9.6337 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172128387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:50 Heat of formation + Delta-G solvation = -102.004669 kcal Electronic energy + Delta-G solvation = -21896.447717 eV Core-core repulsion = 18755.616259 eV Total energy + Delta-G solvation = -3140.831459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.03128 -38.78394 -35.52005 -34.85253 -33.30101 -31.52758 -31.04591 -30.53040 -26.80275 -26.49720 -24.17375 -23.00787 -22.57519 -21.02494 -20.62102 -19.92046 -19.26855 -16.99401 -16.42706 -15.69981 -15.53160 -15.45459 -14.88570 -14.49557 -14.43212 -14.32410 -14.09175 -13.59050 -13.39347 -13.17019 -12.51367 -12.46498 -12.29212 -12.07471 -12.05197 -11.84234 -11.66247 -11.44139 -11.38877 -11.17932 -10.93706 -10.88228 -10.72030 -10.62726 -10.58943 -10.29128 -10.16067 -9.86020 -9.75441 -9.30532 -9.11004 -8.72925 -8.37133 -6.01773 -4.05026 2.84959 3.31792 3.36461 3.37905 3.44764 4.36154 4.39607 4.44036 4.47921 4.70742 4.79542 4.82485 4.98332 5.03160 5.15027 5.24373 5.25238 5.26360 5.32882 5.33736 5.37909 5.51174 5.64054 5.71236 5.72081 5.76456 5.78228 5.79446 5.85000 5.87814 5.92964 5.98713 6.02197 6.09300 6.17526 6.20863 6.32039 6.52853 6.60743 6.85315 7.01322 7.63227 7.76200 7.76655 7.96862 8.37499 8.46399 9.01429 9.58999 11.09446 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.045540 B = 0.002284 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.698015 B =12255.445115 C =12510.148161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.096 0.904 4 C -0.095 4.095 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.510 3.490 12 O -0.546 6.546 13 N -0.727 5.727 14 C 0.116 3.884 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.397 0.603 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.019 0.981 47 H 0.019 0.981 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.156 7.131 27.147 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 H 0.114 0.886 4 C -0.132 4.132 5 C -0.107 4.107 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.155 4.155 11 C 0.295 3.705 12 O -0.423 6.423 13 N -0.377 5.377 14 C -0.007 4.007 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.533 5.533 21 Si 0.722 3.278 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.086 0.914 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.037 0.963 47 H 0.037 0.963 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.558 6.283 27.069 28.015 hybrid contribution -0.543 0.826 -1.071 1.458 sum -4.102 7.109 25.997 27.262 Atomic orbital electron populations 1.21827 0.93143 1.02803 1.02491 1.21375 0.97478 1.00999 0.93542 0.88559 1.21432 1.01846 0.98659 0.91309 1.21241 1.00369 0.94857 0.94196 1.21573 1.01445 0.98330 0.93874 1.21530 1.00290 0.96014 0.97831 1.21540 1.00449 0.96105 0.97686 1.21523 1.01108 0.98319 0.94741 1.21659 1.00557 0.95678 0.97651 1.20662 0.80264 0.84733 0.84798 1.90686 1.38178 1.26522 1.86940 1.46242 1.53359 1.31963 1.06171 1.21627 0.99185 0.96523 0.83361 1.21881 1.00141 0.99469 0.94347 1.19026 0.96661 0.95674 0.90020 1.21166 1.31714 1.12307 0.90942 0.92708 1.25040 0.95185 0.95081 0.99210 1.69959 1.36675 1.22951 1.23679 0.86633 0.79155 0.79734 0.82313 1.20245 1.21268 1.20248 0.91380 0.92122 0.92068 0.91101 0.91287 0.90876 0.91930 0.91978 0.92253 0.92135 0.92370 0.92086 0.92120 0.92212 0.91914 0.91774 0.76911 0.91895 0.91887 0.92781 0.92779 0.96300 0.96299 0.92869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.85 37.16 0.33 -0.89 16 2 C -0.11 -1.15 2.59 -91.77 -0.24 -1.38 16 3 H 0.10 0.84 6.34 -51.93 -0.33 0.51 16 4 C -0.09 -0.95 3.50 -26.73 -0.09 -1.05 16 5 C -0.09 -0.68 2.06 -90.62 -0.19 -0.87 16 6 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 7 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 8 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 9 C -0.12 -0.78 5.92 -26.76 -0.16 -0.94 16 10 C -0.12 -0.87 4.96 -26.76 -0.13 -1.00 16 11 C 0.51 7.49 7.15 -10.99 -0.08 7.41 16 12 O -0.55 -10.32 15.92 5.56 0.09 -10.24 16 13 N -0.73 -10.47 5.45 -60.29 -0.33 -10.80 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.05 16 15 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 18 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.94 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H 0.07 0.46 6.46 -51.93 -0.34 0.13 16 26 H 0.06 0.48 7.57 -51.93 -0.39 0.08 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.54 6.34 -51.93 -0.33 0.21 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 6.46 -51.93 -0.34 0.12 16 41 H 0.40 4.61 7.89 -40.82 -0.32 4.28 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -31.79 371.56 -9.84 -41.63 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -9.19 Total: -1.47 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.73 Total: -15.03 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.41 Total: -37.01 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.79 -9.84 -41.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172128387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.375 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds