Wall clock time and date at job start Tue Mar 31 2020 05:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46889 * 2 1 4 4 C 1.52995 * 109.47108 * 240.00129 * 2 1 3 5 5 C 1.53004 * 109.47203 * 65.72652 * 4 2 1 6 6 C 1.53002 * 109.46963 * 185.61889 * 5 4 2 7 7 C 1.53004 * 109.46963 * 180.02562 * 6 5 4 8 8 C 1.52999 * 109.46974 * 60.00063 * 7 6 5 9 9 C 1.52997 * 109.47459 * 300.00229 * 8 7 6 10 10 C 1.52995 * 109.46893 * 65.62297 * 5 4 2 11 11 C 1.50696 * 109.47560 * 120.00052 * 2 1 3 12 12 O 1.21283 * 120.00368 * 119.99910 * 11 2 1 13 13 N 1.34781 * 119.99520 * 300.00135 * 11 2 1 14 14 C 1.46507 * 119.99761 * 179.72465 * 13 11 2 15 15 C 1.53000 * 109.47268 * 180.27641 * 14 13 11 16 16 C 1.52998 * 109.46872 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46500 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00249 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99404 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99741 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00429 * 359.97438 * 19 17 16 22 22 H 1.48502 * 109.46986 * 89.99993 * 21 19 17 23 23 H 1.48495 * 109.47463 * 210.00324 * 21 19 17 24 24 H 1.48505 * 109.46927 * 330.00301 * 21 19 17 25 25 H 1.09000 * 109.47543 * 53.86544 * 1 2 3 26 26 H 1.09008 * 109.46747 * 173.86636 * 1 2 3 27 27 H 1.08999 * 109.47199 * 293.85758 * 1 2 3 28 28 H 1.08998 * 109.47454 * 185.72699 * 4 2 1 29 29 H 1.08997 * 109.47287 * 305.72728 * 4 2 1 30 30 H 1.08991 * 109.47058 * 305.62089 * 5 4 2 31 31 H 1.08991 * 109.47396 * 299.99992 * 6 5 4 32 32 H 1.09005 * 109.47029 * 60.00449 * 6 5 4 33 33 H 1.09005 * 109.47046 * 300.00252 * 7 6 5 34 34 H 1.08998 * 109.47451 * 179.97438 * 7 6 5 35 35 H 1.09000 * 109.47316 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.47079 * 60.00210 * 8 7 6 37 37 H 1.09005 * 109.46959 * 300.00055 * 9 8 7 38 38 H 1.09001 * 109.47650 * 180.02562 * 9 8 7 39 39 H 1.09002 * 109.47539 * 299.99632 * 10 5 4 40 40 H 1.08998 * 109.47773 * 59.99925 * 10 5 4 41 41 H 0.96994 * 120.00219 * 0.02562 * 13 11 2 42 42 H 1.09006 * 109.46787 * 300.27458 * 14 13 11 43 43 H 1.08996 * 109.47224 * 60.26930 * 14 13 11 44 44 H 1.08995 * 109.46423 * 300.00000 * 15 14 13 45 45 H 1.08999 * 109.47039 * 60.00021 * 15 14 13 46 46 H 1.09006 * 109.46992 * 299.99699 * 16 15 14 47 47 H 1.08999 * 109.47265 * 60.00167 * 16 15 14 48 48 H 0.97005 * 120.00049 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6509 0.0784 -2.4943 6 6 2.0365 -0.7099 -3.7477 7 6 1.6480 0.0900 -4.9928 8 6 2.3839 1.4313 -4.9874 9 6 1.9985 2.2196 -3.7341 10 6 2.3864 1.4199 -2.4893 11 6 2.0324 -0.7104 1.2304 12 8 2.7297 -1.6965 1.1191 13 7 1.7068 -0.2499 2.4545 14 6 2.1903 -0.9440 3.6507 15 6 1.6757 -0.2260 4.9000 16 6 2.1801 -0.9513 6.1491 17 6 1.6726 -0.2444 7.3795 18 1 1.0529 0.6345 7.2805 19 6 2.0007 -0.7191 8.6318 20 7 1.5583 -0.1020 9.7056 21 14 3.0733 -2.2388 8.8032 22 1 4.5010 -1.8336 8.8554 23 1 2.7168 -2.9580 10.0525 24 1 2.8548 -3.1329 7.6378 25 1 -0.3634 0.6060 -0.8300 26 1 -0.3633 -1.0219 -0.1098 27 1 -0.3633 0.4156 0.9398 28 1 3.1251 -0.8109 -1.1995 29 1 1.5954 -1.7150 -1.3020 30 1 0.5752 0.2538 -2.4920 31 1 3.1122 -0.8853 -3.7500 32 1 1.5124 -1.6657 -3.7513 33 1 0.5722 0.2658 -4.9907 34 1 1.9230 -0.4713 -5.8858 35 1 2.1075 2.0010 -5.8746 36 1 3.4597 1.2555 -4.9895 37 1 0.9227 2.3954 -3.7319 38 1 2.5224 3.1754 -3.7304 39 1 2.1118 1.9816 -1.5964 40 1 3.4622 1.2446 -2.4916 41 1 1.1488 0.5385 2.5435 42 1 1.8265 -1.9715 3.6465 43 1 3.2802 -0.9445 3.6549 44 1 2.0394 0.8015 4.9041 45 1 0.5857 -0.2256 4.8957 46 1 1.8159 -1.9787 6.1446 47 1 3.2700 -0.9521 6.1536 48 1 1.7887 -0.4362 10.5866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172128391.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:53 Heat of formation + Delta-G solvation = -98.721137 kcal Electronic energy + Delta-G solvation = -21946.880469 eV Core-core repulsion = 18806.191395 eV Total energy + Delta-G solvation = -3140.689074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.08689 -38.82561 -35.63817 -34.90310 -33.30806 -31.65787 -31.09974 -30.68540 -27.23962 -26.52370 -24.19028 -22.98555 -22.47752 -21.07738 -20.56169 -19.93126 -19.31988 -17.13935 -16.70131 -15.81243 -15.62263 -15.52991 -14.97914 -14.51853 -14.36524 -14.23378 -14.11193 -13.57080 -13.43601 -13.25077 -12.71217 -12.55672 -12.49282 -12.12723 -12.10509 -11.96425 -11.86076 -11.49385 -11.41338 -11.22189 -11.07473 -10.96220 -10.89192 -10.62674 -10.32014 -10.20621 -10.14744 -9.95012 -9.76728 -9.43386 -9.23015 -8.82410 -8.56074 -6.06908 -4.05572 2.77587 3.30858 3.35913 3.38680 3.42908 4.33156 4.37276 4.43956 4.45215 4.67009 4.76279 4.78867 4.95663 5.00105 5.12664 5.21708 5.23014 5.23635 5.27152 5.28846 5.35162 5.47952 5.58752 5.62169 5.66356 5.68974 5.72510 5.73918 5.82355 5.85466 5.90151 5.95800 5.99567 6.02209 6.06209 6.17039 6.28772 6.38129 6.44781 6.71302 6.80204 7.22358 7.35854 7.66930 7.76739 8.37856 8.49889 8.96863 9.55372 11.06272 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.044199 B = 0.002391 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.341430 B =11710.059771 C =11955.400798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 H 0.097 0.903 4 C -0.095 4.095 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.118 4.118 11 C 0.511 3.489 12 O -0.546 6.546 13 N -0.727 5.727 14 C 0.114 3.886 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.265 1.265 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.399 0.601 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.014 0.986 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 3.327 -29.634 29.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.115 0.885 4 C -0.132 4.132 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.155 4.155 11 C 0.297 3.703 12 O -0.424 6.424 13 N -0.377 5.377 14 C -0.009 4.009 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.233 0.767 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.032 0.968 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.825 2.598 -29.494 29.620 hybrid contribution 0.298 -0.332 0.434 0.622 sum -0.527 2.266 -29.060 29.153 Atomic orbital electron populations 1.21829 0.93053 1.02838 1.02528 1.21376 0.97529 1.01035 0.93457 0.88472 1.21445 1.01889 0.98570 0.91338 1.21229 1.00356 0.94887 0.94163 1.21574 1.01484 0.98264 0.93894 1.21532 1.00245 0.96075 0.97819 1.21541 1.00377 0.96169 0.97699 1.21524 1.01189 0.98271 0.94720 1.21655 1.00470 0.95728 0.97679 1.20679 0.80194 0.84674 0.84798 1.90683 1.38200 1.26545 1.86961 1.46201 1.53529 1.31949 1.06065 1.21637 0.99214 0.96487 0.83603 1.21698 1.00617 0.99579 0.93192 1.19506 0.96183 0.96232 0.93013 1.21097 1.32344 1.13467 0.89069 0.91015 1.25036 0.95719 0.96916 0.95869 1.69914 1.45789 1.40554 0.97915 0.86770 0.81035 0.83747 0.77715 1.20244 1.21359 1.18911 0.91404 0.92036 0.92067 0.91105 0.91312 0.90880 0.91947 0.91991 0.92112 0.92248 0.92351 0.92095 0.92103 0.92191 0.91777 0.91927 0.76724 0.91905 0.91904 0.92159 0.92136 0.96330 0.96765 0.92702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 8.77 37.16 0.33 -0.85 16 2 C -0.11 -1.10 2.60 -91.78 -0.24 -1.34 16 3 H 0.10 0.81 6.34 -51.93 -0.33 0.48 16 4 C -0.09 -0.91 3.50 -26.73 -0.09 -1.01 16 5 C -0.09 -0.66 2.07 -90.62 -0.19 -0.84 16 6 C -0.11 -0.83 5.20 -26.73 -0.14 -0.97 16 7 C -0.12 -0.76 5.92 -26.73 -0.16 -0.91 16 8 C -0.12 -0.75 5.92 -26.73 -0.16 -0.91 16 9 C -0.12 -0.76 5.92 -26.76 -0.16 -0.92 16 10 C -0.12 -0.84 4.97 -26.76 -0.13 -0.97 16 11 C 0.51 7.17 7.15 -10.99 -0.08 7.09 16 12 O -0.55 -9.91 15.90 5.56 0.09 -9.82 16 13 N -0.73 -9.93 5.41 -60.29 -0.33 -10.26 16 14 C 0.11 1.90 5.67 -4.04 -0.02 1.88 16 15 C -0.11 -2.11 5.27 -26.73 -0.14 -2.25 16 16 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 17 C -0.52 -14.74 9.66 -34.44 -0.33 -15.07 16 18 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 20 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 21 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 24 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 25 H 0.07 0.44 6.77 -51.93 -0.35 0.09 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 27 H 0.06 0.47 7.40 -51.93 -0.38 0.09 16 28 H 0.07 0.79 7.93 -51.93 -0.41 0.38 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.52 6.48 -51.93 -0.34 0.18 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.44 6.47 -51.93 -0.34 0.11 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.40 4.39 7.82 -40.82 -0.32 4.08 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 47 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -32.17 368.06 -9.48 -41.64 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -9.16 Total: -1.65 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -1.73 Total: -15.63 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.45 Total: -37.27 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.17 -9.48 -41.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172128391.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.080 kcal (2) G-P(sol) polarization free energy of solvation -32.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds