Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46929 * 2 1 4 4 C 1.50696 * 109.47047 * 239.99339 * 2 1 3 5 5 H 1.08001 * 120.00042 * 274.87543 * 4 2 1 6 6 C 1.37878 * 119.99809 * 94.88493 * 4 2 1 7 7 N 1.31510 * 120.00051 * 183.87924 * 6 4 2 8 8 Si 1.86800 * 120.00133 * 3.87368 * 6 4 2 9 9 H 1.48504 * 109.46930 * 84.43018 * 8 6 4 10 10 H 1.48492 * 109.47325 * 204.42989 * 8 6 4 11 11 H 1.48496 * 109.47196 * 324.43215 * 8 6 4 12 12 N 1.46900 * 109.47201 * 119.99217 * 2 1 3 13 13 C 1.46896 * 111.00167 * 176.04625 * 12 2 1 14 14 C 1.46897 * 111.00201 * 300.00246 * 12 2 1 15 15 C 1.53010 * 109.47103 * 169.99691 * 14 12 2 16 16 H 1.08997 * 110.31990 * 307.21246 * 15 14 12 17 17 C 1.54513 * 110.35383 * 184.99745 * 15 14 12 18 18 C 1.54608 * 104.05654 * 217.31710 * 17 15 14 19 19 C 1.54017 * 103.93549 * 0.31562 * 18 17 15 20 20 C 1.52470 * 110.10765 * 264.65890 * 19 18 17 21 21 C 1.53084 * 109.53160 * 179.25162 * 20 19 18 22 22 C 1.53003 * 109.42031 * 59.15919 * 21 20 19 23 23 C 1.53014 * 109.55770 * 299.59487 * 22 21 20 24 24 C 1.52470 * 110.11868 * 142.27819 * 19 18 17 25 25 O 1.43907 * 105.39876 * 23.46352 * 19 18 17 26 26 H 1.08996 * 109.47574 * 66.77342 * 1 2 3 27 27 H 1.09005 * 109.47205 * 186.77628 * 1 2 3 28 28 H 1.08999 * 109.47100 * 306.77270 * 1 2 3 29 29 H 0.96998 * 120.00302 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47285 * 183.95474 * 13 12 2 31 31 H 1.09000 * 109.46918 * 63.95698 * 13 12 2 32 32 H 1.08996 * 109.47214 * 303.95502 * 13 12 2 33 33 H 1.08996 * 109.47091 * 289.99894 * 14 12 2 34 34 H 1.09002 * 109.47169 * 49.99956 * 14 12 2 35 35 H 1.09001 * 110.51520 * 335.96452 * 17 15 14 36 36 H 1.09007 * 110.50917 * 98.54191 * 17 15 14 37 37 H 1.08997 * 110.53104 * 118.93173 * 18 17 15 38 38 H 1.08998 * 110.53378 * 241.55654 * 18 17 15 39 39 H 1.09001 * 109.46204 * 299.27126 * 20 19 18 40 40 H 1.09005 * 109.46156 * 59.22902 * 20 19 18 41 41 H 1.09006 * 109.48187 * 299.17413 * 21 20 19 42 42 H 1.08999 * 109.49116 * 179.14645 * 21 20 19 43 43 H 1.08996 * 109.46035 * 179.56951 * 22 21 20 44 44 H 1.08998 * 109.44291 * 59.60925 * 22 21 20 45 45 H 1.08994 * 109.47678 * 300.42459 * 23 22 21 46 46 H 1.08998 * 109.47702 * 180.39169 * 23 22 21 47 47 H 1.09003 * 109.46085 * 300.76309 * 24 19 18 48 48 H 1.09000 * 109.46693 * 60.72579 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1373 -1.7854 -1.2281 6 6 2.3579 0.0117 -2.3588 7 7 2.7232 -0.6133 -3.4568 8 14 2.2800 1.8778 -2.3282 9 1 3.5485 2.4171 -1.7756 10 1 2.0853 2.3878 -3.7091 11 1 1.1445 2.3119 -1.4755 12 7 2.0197 -0.6923 1.1995 13 6 3.4850 -0.7944 1.1872 14 6 1.5486 -0.0261 2.4211 15 6 1.8627 -0.9040 3.6343 16 1 1.4730 -1.9108 3.4840 17 6 1.2654 -0.2823 4.9165 18 6 2.3236 -0.5769 6.0047 19 6 3.4329 -1.3317 5.2486 20 6 3.2366 -2.8366 5.3953 21 6 4.3346 -3.5735 4.6240 22 6 5.7033 -3.1646 5.1721 23 6 5.8948 -1.6564 4.9985 24 6 4.8025 -0.9126 5.7714 25 8 3.2877 -0.9442 3.8703 26 1 -0.3634 0.4053 -0.9443 27 1 -0.3634 -1.0205 0.1213 28 1 -0.3633 0.6152 0.8232 29 1 2.9520 -0.1052 -4.2508 30 1 3.8163 -1.3719 2.0502 31 1 3.9191 0.2045 1.2301 32 1 3.8069 -1.2914 0.2721 33 1 2.0518 0.9348 2.5279 34 1 0.4722 0.1326 2.3564 35 1 1.1327 0.7926 4.7938 36 1 0.3164 -0.7575 5.1652 37 1 2.7102 0.3523 6.4233 38 1 1.8999 -1.2020 6.7906 39 1 3.2883 -3.1085 6.4496 40 1 2.2618 -3.1164 4.9958 41 1 4.2737 -3.3134 3.5672 42 1 4.2025 -4.6491 4.7418 43 1 6.4853 -3.6947 4.6285 44 1 5.7609 -3.4184 6.2305 45 1 5.8299 -1.4012 3.9409 46 1 6.8730 -1.3677 5.3830 47 1 4.9296 0.1616 5.6364 48 1 4.8771 -1.1566 6.8311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190982739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = -61.802432 kcal Electronic energy + Delta-G solvation = -24171.077021 eV Core-core repulsion = 21031.988862 eV Total energy + Delta-G solvation = -3139.088159 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.46277 -37.33732 -36.00665 -32.62494 -32.16988 -31.07560 -30.69974 -29.62216 -27.54030 -25.24013 -24.19660 -22.87305 -22.61213 -21.05295 -20.56342 -19.30879 -19.14135 -16.94023 -16.30034 -15.82162 -15.13196 -14.84165 -14.64552 -14.19194 -14.08984 -13.78134 -13.61322 -13.05365 -12.91706 -12.63992 -12.39319 -12.21210 -12.16444 -11.93746 -11.71712 -11.56718 -11.30737 -11.19069 -11.09377 -10.92975 -10.87803 -10.73004 -10.60945 -10.46872 -10.21012 -10.09404 -9.93713 -9.87487 -9.65845 -9.25586 -8.98698 -8.53475 -7.19083 -6.04290 -4.01757 3.29031 3.37284 3.39371 3.97797 4.43588 4.56758 4.59090 4.72652 4.84560 4.89969 5.02313 5.10313 5.26663 5.29294 5.35863 5.47316 5.48925 5.50391 5.61524 5.67036 5.69936 5.74998 5.78739 5.83952 5.91840 5.99097 6.06331 6.11974 6.19143 6.25085 6.27426 6.32426 6.34775 6.39942 6.50802 6.55857 6.63182 6.72415 6.84139 6.99790 7.16623 7.30475 7.39842 7.68991 8.12616 8.24341 8.73124 9.06624 9.60026 11.08936 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022597 B = 0.004815 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.790894 B = 5814.061366 C = 6324.368264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.177 3.823 3 H -0.002 1.002 4 C -0.497 4.497 5 H 0.081 0.919 6 C 0.071 3.929 7 N -0.899 5.899 8 Si 0.872 3.128 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.267 1.267 12 N -0.529 5.529 13 C 0.038 3.962 14 C 0.054 3.946 15 C 0.083 3.917 16 H 0.075 0.925 17 C -0.150 4.150 18 C -0.144 4.144 19 C 0.100 3.900 20 C -0.129 4.129 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.102 4.102 25 O -0.342 6.342 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.019 0.981 29 H 0.263 0.737 30 H 0.071 0.929 31 H 0.002 0.998 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.397 -1.303 21.204 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.070 3.930 3 H 0.016 0.984 4 C -0.535 4.535 5 H 0.099 0.901 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.700 3.300 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.192 1.192 12 N -0.253 5.253 13 C -0.110 4.110 14 C -0.075 4.075 15 C 0.025 3.975 16 H 0.093 0.907 17 C -0.189 4.189 18 C -0.181 4.181 19 C 0.060 3.940 20 C -0.166 4.166 21 C -0.155 4.155 22 C -0.154 4.154 23 C -0.156 4.156 24 C -0.140 4.140 25 O -0.262 6.262 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.020 0.980 32 H 0.094 0.906 33 H 0.045 0.955 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.433 -1.701 20.828 20.947 hybrid contribution 0.096 1.906 0.042 1.909 sum 1.529 0.205 20.871 20.928 Atomic orbital electron populations 1.21994 0.98157 1.00265 0.98719 1.19736 0.92007 0.92144 0.89081 0.98434 1.20882 1.42733 0.95891 0.94006 0.90142 1.24980 0.94783 0.97811 0.95479 1.69888 1.46357 1.35565 1.01943 0.86949 0.78981 0.87106 0.77007 1.20419 1.21493 1.19213 1.62146 1.10837 1.51468 1.00868 1.22350 0.87205 0.98912 1.02541 1.22247 1.00357 0.94626 0.90259 1.23073 0.81429 0.99292 0.93693 0.90746 1.22971 0.98775 1.01979 0.95138 1.22918 0.96223 1.00732 0.98275 1.21899 0.94926 0.93436 0.83750 1.21876 0.99615 0.94846 1.00287 1.21474 0.93932 0.98854 1.01208 1.21509 0.97379 0.96138 1.00378 1.21501 0.97453 0.94888 1.01729 1.21448 0.93109 1.00421 0.98985 1.89242 1.22776 1.89183 1.24969 0.93288 0.92785 0.96171 0.92699 0.91052 0.97953 0.90589 0.95535 0.90082 0.90951 0.90847 0.91055 0.90978 0.91808 0.91571 0.90647 0.92457 0.92196 0.92694 0.90794 0.92495 0.91507 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.76 37.16 0.33 -2.57 16 2 C 0.18 4.29 1.70 -68.87 -0.12 4.18 16 3 H 0.00 -0.05 5.36 -51.93 -0.28 -0.33 16 4 C -0.50 -14.02 7.39 -34.44 -0.25 -14.28 16 5 H 0.08 2.51 8.05 -52.49 -0.42 2.09 16 6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 7 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 8 Si 0.87 21.97 26.95 -169.99 -4.58 17.39 16 9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.49 6.88 56.52 0.39 -6.10 16 12 N -0.53 -11.41 4.62 -236.29 -1.09 -12.51 16 13 C 0.04 0.81 8.74 60.06 0.52 1.34 16 14 C 0.05 0.96 4.52 -3.82 -0.02 0.94 16 15 C 0.08 1.22 2.91 -25.93 -0.08 1.15 16 16 H 0.07 1.15 7.28 -51.93 -0.38 0.77 16 17 C -0.15 -1.74 6.64 -25.09 -0.17 -1.90 16 18 C -0.14 -1.48 6.16 -25.36 -0.16 -1.64 16 19 C 0.10 1.16 0.68 -90.63 -0.06 1.10 16 20 C -0.13 -1.40 4.64 -26.96 -0.13 -1.53 16 21 C -0.12 -1.34 5.82 -26.69 -0.16 -1.49 16 22 C -0.12 -1.20 5.91 -26.72 -0.16 -1.36 16 23 C -0.12 -1.30 5.82 -26.68 -0.16 -1.46 16 24 C -0.10 -1.09 4.84 -26.96 -0.13 -1.22 16 25 O -0.34 -5.16 6.76 -35.23 -0.24 -5.40 16 26 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.02 0.37 6.57 -51.93 -0.34 0.03 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.40 5.37 -51.93 -0.28 1.12 16 31 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 32 H 0.08 1.83 6.82 -51.93 -0.35 1.47 16 33 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.08 1.36 5.97 -51.93 -0.31 1.05 16 35 H 0.07 0.83 7.87 -51.93 -0.41 0.43 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 38 H 0.07 0.64 7.85 -51.93 -0.41 0.23 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.76 6.98 -51.93 -0.36 0.40 16 41 H 0.07 1.05 7.83 -51.93 -0.41 0.64 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.98 7.83 -51.93 -0.41 0.57 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -29.96 350.96 -9.65 -39.61 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.98 Total: -0.82 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -0.82 Total: -16.78 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.32 Total: -39.29 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.24 Total: -5.40 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.58 Total: 17.39 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.96 -9.65 -39.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190982739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.191 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds