Wall clock time and date at job start Tue Mar 31 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47229 * 120.00230 * 2 1 3 5 5 C 1.53005 * 109.47020 * 294.99894 * 4 2 1 6 6 C 1.53003 * 109.46715 * 295.00116 * 5 4 2 7 7 C 1.53005 * 109.46715 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47050 * 60.00206 * 7 6 5 9 9 C 1.53003 * 109.47193 * 299.99501 * 8 7 6 10 10 C 1.52999 * 109.47050 * 175.00322 * 5 4 2 11 11 C 1.53005 * 109.46676 * 240.00104 * 2 1 3 12 12 N 1.46901 * 109.47056 * 65.00245 * 11 2 1 13 13 C 1.47962 * 110.99645 * 169.99960 * 12 11 2 14 14 C 1.53939 * 86.17954 * 222.41370 * 13 12 11 15 15 O 1.42901 * 113.73443 * 269.25769 * 14 13 12 16 16 C 1.50699 * 113.73181 * 138.07765 * 14 13 12 17 17 H 1.07999 * 120.00015 * 4.91121 * 16 14 13 18 18 C 1.37879 * 119.99686 * 184.90847 * 16 14 13 19 19 N 1.31521 * 119.99972 * 13.82310 * 18 16 14 20 20 Si 1.86792 * 119.99875 * 193.81760 * 18 16 14 21 21 H 1.48504 * 109.47216 * 180.02562 * 20 18 16 22 22 H 1.48504 * 109.47601 * 300.00327 * 20 18 16 23 23 H 1.48506 * 109.47155 * 60.00602 * 20 18 16 24 24 C 1.47957 * 111.00157 * 70.63963 * 12 11 2 25 25 H 1.09002 * 109.46764 * 300.00298 * 1 2 3 26 26 H 1.08996 * 109.47411 * 59.99856 * 1 2 3 27 27 H 1.08996 * 109.47044 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47193 * 54.99469 * 4 2 1 29 29 H 1.08997 * 109.47048 * 175.00226 * 4 2 1 30 30 H 1.08999 * 109.47105 * 54.99951 * 5 4 2 31 31 H 1.08999 * 109.47200 * 299.99778 * 6 5 4 32 32 H 1.08995 * 109.47122 * 60.00297 * 6 5 4 33 33 H 1.08999 * 109.47105 * 299.99836 * 7 6 5 34 34 H 1.09003 * 109.46866 * 179.97438 * 7 6 5 35 35 H 1.09005 * 109.47031 * 179.97438 * 8 7 6 36 36 H 1.08999 * 109.47469 * 59.99852 * 8 7 6 37 37 H 1.08999 * 109.47200 * 300.00516 * 9 8 7 38 38 H 1.08995 * 109.47122 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.46993 * 299.99563 * 10 5 4 40 40 H 1.08999 * 109.47469 * 59.99852 * 10 5 4 41 41 H 1.08996 * 109.47057 * 304.99667 * 11 2 1 42 42 H 1.08995 * 109.46388 * 184.99908 * 11 2 1 43 43 H 1.08999 * 113.76019 * 108.09949 * 13 12 11 44 44 H 1.09000 * 113.85879 * 336.74722 * 13 12 11 45 45 H 0.96693 * 113.99776 * 171.47023 * 15 14 13 46 46 H 0.97001 * 119.99982 * 5.87544 * 19 18 16 47 47 H 1.08994 * 113.76072 * 23.25977 * 24 12 11 48 48 H 1.09001 * 113.75391 * 251.89917 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 0.0689 2.4953 6 6 2.3450 1.4244 2.4924 7 6 1.9397 2.2148 3.7382 8 6 2.3395 1.4326 4.9909 9 6 1.6298 0.0771 4.9938 10 6 2.0355 -0.7136 3.7477 11 6 2.0400 -0.7213 -1.2493 12 7 1.6513 0.0375 -2.4457 13 6 2.3242 -0.4933 -3.6519 14 6 2.5497 0.9773 -4.0473 15 8 1.5001 1.5251 -4.8476 16 6 3.9208 1.2507 -4.6096 17 1 4.6087 0.4349 -4.7761 18 6 4.2971 2.5423 -4.9114 19 7 3.5861 3.5554 -4.4665 20 14 5.8167 2.8534 -5.9522 21 1 6.0034 4.3157 -6.1311 22 1 7.0074 2.2823 -5.2730 23 1 5.6477 2.2095 -7.2797 24 6 2.4199 1.2977 -2.5472 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6054 -1.7198 1.2951 29 1 3.1264 -0.7994 1.2055 30 1 0.5564 0.2236 2.4928 31 1 3.4239 1.2696 2.4948 32 1 2.0599 1.9818 1.6002 33 1 0.8608 2.3696 3.7353 34 1 2.4457 3.1803 3.7363 35 1 2.0512 1.9959 5.8784 36 1 3.4184 1.2778 4.9938 37 1 0.5508 0.2318 4.9909 38 1 1.9149 -0.4803 5.8860 39 1 1.5299 -1.6793 3.7497 40 1 3.1145 -0.8684 3.7501 41 1 1.6054 -1.7198 -1.2952 42 1 3.1262 -0.7994 -1.2056 43 1 1.6576 -1.0319 -4.3254 44 1 3.2447 -1.0372 -3.4399 45 1 1.5707 2.4790 -4.9894 46 1 2.8481 3.3993 -3.8567 47 1 3.3683 1.2781 -2.0104 48 1 1.8298 2.1899 -2.3382 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191915919.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:05 Heat of formation + Delta-G solvation = -61.406061 kcal Electronic energy + Delta-G solvation = -23243.577384 eV Core-core repulsion = 20104.506414 eV Total energy + Delta-G solvation = -3139.070971 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.55663 -38.82147 -35.87237 -34.10192 -32.19798 -31.15178 -30.77013 -27.87542 -26.31626 -25.39651 -25.01463 -22.97654 -22.58078 -21.07795 -19.86267 -19.32763 -18.76532 -17.76297 -15.70746 -15.44067 -15.22203 -14.56845 -14.49180 -14.36036 -14.04031 -14.02153 -13.76263 -13.47998 -12.96198 -12.70801 -12.46193 -12.28523 -12.14132 -11.85370 -11.68869 -11.45024 -11.27237 -11.21453 -11.14502 -10.91943 -10.78088 -10.69767 -10.64085 -10.43476 -10.22022 -10.16870 -10.12038 -9.89526 -9.78828 -9.10586 -8.67654 -8.31597 -7.73935 -6.54113 -4.31717 3.35583 3.39440 3.57524 4.39086 4.48649 4.59266 4.66047 4.75342 4.96972 5.02785 5.07720 5.13860 5.24541 5.35859 5.39493 5.43071 5.50426 5.52465 5.57178 5.68942 5.76954 5.82364 5.88070 5.90788 5.91972 5.95720 5.98689 6.03752 6.07115 6.11545 6.14192 6.18028 6.27914 6.29338 6.33171 6.37169 6.45925 6.55044 6.65988 6.70010 6.75969 7.11655 7.13882 7.86270 7.91403 8.22044 8.60501 9.07978 9.38736 10.77406 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003774 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.255775 B = 7418.287370 C = 8064.097680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.109 4.109 5 C -0.086 4.086 6 C -0.117 4.117 7 C -0.120 4.120 8 C -0.119 4.119 9 C -0.119 4.119 10 C -0.114 4.114 11 C 0.025 3.975 12 N -0.475 5.475 13 C 0.018 3.982 14 C 0.222 3.778 15 O -0.566 6.566 16 C -0.620 4.620 17 H 0.057 0.943 18 C 0.035 3.965 19 N -0.901 5.901 20 Si 1.063 2.937 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.285 1.285 24 C -0.018 4.018 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.370 0.630 46 H 0.270 0.730 47 H 0.062 0.938 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.945 -5.779 16.531 17.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.147 4.147 5 C -0.104 4.104 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.152 4.152 11 C -0.104 4.104 12 N -0.197 5.197 13 C -0.110 4.110 14 C 0.181 3.819 15 O -0.372 6.372 16 C -0.658 4.658 17 H 0.076 0.924 18 C -0.170 4.170 19 N -0.538 5.538 20 Si 0.890 3.110 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.211 1.211 24 C -0.148 4.148 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.051 0.949 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.219 0.781 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.994 -5.214 15.850 16.952 hybrid contribution 0.311 -0.838 0.933 1.292 sum -2.683 -6.052 16.783 18.042 Atomic orbital electron populations 1.21731 0.94976 1.01122 1.01485 1.21111 0.96430 0.99930 0.93031 0.90941 1.21662 1.00590 0.98675 0.93745 1.21189 1.00441 0.94896 0.93904 1.21644 1.00250 0.95757 0.97805 1.21536 1.01094 0.98390 0.94698 1.21537 1.00343 0.96057 0.97742 1.21535 1.00298 0.96074 0.97710 1.21602 1.01115 0.98218 0.94249 1.22656 0.97698 0.97844 0.92216 1.68518 1.46112 1.04134 1.00949 1.23966 0.96624 0.98155 0.92300 1.20039 0.86549 0.89353 0.85966 1.86229 1.50619 1.27086 1.73267 1.22362 0.99128 0.95921 1.48365 0.92433 1.25897 1.02428 0.92067 0.96613 1.70889 1.20295 1.33005 1.29621 0.83647 0.74721 0.76314 0.76270 1.20583 1.21343 1.21124 1.24762 0.95372 0.92826 1.01812 0.93580 0.91582 0.93550 0.92232 0.92310 0.90951 0.92156 0.91457 0.92174 0.92191 0.92448 0.92166 0.92171 0.92421 0.92273 0.92166 0.91846 0.94909 0.90764 0.91639 0.78148 0.91786 0.91953 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 8.84 37.16 0.33 -1.59 16 2 C -0.09 -1.26 2.26 -90.62 -0.21 -1.47 16 3 H 0.07 1.17 5.62 -51.93 -0.29 0.88 16 4 C -0.11 -1.31 4.15 -26.73 -0.11 -1.42 16 5 C -0.09 -0.92 2.05 -90.62 -0.19 -1.11 16 6 C -0.12 -1.32 4.96 -26.73 -0.13 -1.45 16 7 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 8 C -0.12 -1.05 5.92 -26.73 -0.16 -1.21 16 9 C -0.12 -1.02 5.93 -26.70 -0.16 -1.18 16 10 C -0.11 -1.08 5.21 -26.70 -0.14 -1.22 16 11 C 0.02 0.42 4.21 -3.82 -0.02 0.41 16 12 N -0.47 -9.77 5.72 -238.24 -1.36 -11.13 16 13 C 0.02 0.40 7.36 -2.76 -0.02 0.38 16 14 C 0.22 5.61 1.08 -90.83 -0.10 5.51 16 15 O -0.57 -14.93 13.45 -35.23 -0.47 -15.40 16 16 C -0.62 -16.95 8.56 -34.44 -0.29 -17.24 16 17 H 0.06 1.57 7.85 -52.49 -0.41 1.16 16 18 C 0.04 0.96 5.26 -17.82 -0.09 0.87 16 19 N -0.90 -25.29 12.80 55.43 0.71 -24.58 16 20 Si 1.06 24.10 29.93 -169.99 -5.09 19.01 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 24 C -0.02 -0.42 5.47 -2.77 -0.02 -0.43 16 25 H 0.05 0.58 6.46 -51.93 -0.34 0.24 16 26 H 0.07 1.08 7.75 -51.93 -0.40 0.68 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.80 6.34 -51.93 -0.33 0.47 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.85 6.46 -51.93 -0.34 0.52 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.58 7.69 -51.93 -0.40 0.18 16 43 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.07 1.40 7.75 -51.93 -0.40 0.99 16 45 H 0.37 9.64 6.95 45.56 0.32 9.95 16 46 H 0.27 7.47 5.52 -40.82 -0.23 7.24 16 47 H 0.06 1.46 7.73 -51.93 -0.40 1.06 16 48 H 0.07 1.55 7.79 -51.93 -0.40 1.14 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -28.07 358.32 -10.61 -38.68 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -8.34 Total: 10.52 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.46 Total: -22.50 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.65 Total: -35.71 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: -0.47 Total: -15.40 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.09 Total: 19.01 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.07 -10.61 -38.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191915919.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.722 kcal (2) G-P(sol) polarization free energy of solvation -28.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds