Wall clock time and date at job start Tue Mar 31 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08989 * 109.47260 * 2 1 4 4 C 1.53001 * 109.47099 * 239.99084 * 2 1 3 5 5 C 1.53005 * 109.46869 * 65.76544 * 4 2 1 6 6 C 1.52998 * 109.47346 * 185.61142 * 5 4 2 7 7 C 1.52996 * 109.47196 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.47254 * 60.00121 * 7 6 5 9 9 C 1.53007 * 109.46993 * 299.99649 * 8 7 6 10 10 C 1.52996 * 109.46833 * 60.00093 * 9 8 7 11 11 C 1.53002 * 109.46674 * 119.99617 * 2 1 3 12 12 N 1.46894 * 109.47341 * 294.99929 * 11 2 1 13 13 C 1.47481 * 110.99926 * 265.97255 * 12 11 2 14 14 C 1.53516 * 87.93175 * 221.29365 * 13 12 11 15 15 O 1.42898 * 114.17094 * 272.37649 * 14 13 12 16 16 C 1.50696 * 114.34147 * 139.68142 * 14 13 12 17 17 H 1.07995 * 120.00527 * 266.07429 * 16 14 13 18 18 C 1.37882 * 120.00096 * 86.07999 * 16 14 13 19 19 N 1.31518 * 119.99605 * 359.97438 * 18 16 14 20 20 Si 1.86796 * 120.00164 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46874 * 60.00109 * 20 18 16 22 22 H 1.48500 * 109.47110 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47299 * 299.99839 * 20 18 16 24 24 C 1.47483 * 111.00236 * 170.00102 * 12 11 2 25 25 H 1.08999 * 109.47436 * 293.85515 * 1 2 3 26 26 H 1.09008 * 109.46510 * 53.84777 * 1 2 3 27 27 H 1.08996 * 109.47478 * 173.84332 * 1 2 3 28 28 H 1.09001 * 109.46983 * 185.75861 * 4 2 1 29 29 H 1.08997 * 109.47594 * 305.76893 * 4 2 1 30 30 H 1.09000 * 109.46866 * 305.61096 * 5 4 2 31 31 H 1.09000 * 109.46718 * 300.00193 * 6 5 4 32 32 H 1.08999 * 109.47295 * 59.99624 * 6 5 4 33 33 H 1.09000 * 109.46978 * 299.99932 * 7 6 5 34 34 H 1.08998 * 109.47068 * 179.97438 * 7 6 5 35 35 H 1.08998 * 109.47113 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47792 * 59.99868 * 8 7 6 37 37 H 1.09000 * 109.47391 * 300.00281 * 9 8 7 38 38 H 1.09003 * 109.47124 * 179.97438 * 9 8 7 39 39 H 1.09005 * 109.47449 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.47482 * 60.00096 * 10 9 8 41 41 H 1.09000 * 109.47033 * 174.99303 * 11 2 1 42 42 H 1.09007 * 109.47369 * 55.00064 * 11 2 1 43 43 H 1.08997 * 113.47648 * 336.06122 * 13 12 11 44 44 H 1.08997 * 113.47634 * 106.52626 * 13 12 11 45 45 H 0.96696 * 114.00037 * 273.83999 * 15 14 13 46 46 H 0.96999 * 119.99671 * 180.02562 * 19 18 16 47 47 H 1.09004 * 113.47531 * 253.46681 * 24 12 11 48 48 H 1.08995 * 113.47252 * 23.87529 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7215 -1.2491 5 6 1.6517 0.0785 -2.4943 6 6 2.0373 -0.7097 -3.7476 7 6 1.6485 0.0899 -4.9927 8 6 2.3840 1.4314 -4.9876 9 6 1.9983 2.2197 -3.7342 10 6 2.3872 1.4201 -2.4891 11 6 2.0399 -0.7212 1.2493 12 7 1.6513 0.0375 2.4456 13 6 2.7283 0.9546 2.8629 14 6 2.4288 0.5566 4.3150 15 8 1.4133 1.3441 4.9399 16 6 3.6533 0.3740 5.1741 17 1 4.0889 -0.6072 5.2921 18 6 4.2176 1.4596 5.8099 19 7 3.6874 2.6545 5.6660 20 14 5.7350 1.2331 6.8755 21 1 6.8417 0.6852 6.0507 22 1 6.1424 2.5441 7.4416 23 1 5.4276 0.2902 7.9807 24 6 1.9133 -0.7386 3.6720 25 1 -0.3634 0.4156 0.9398 26 1 -0.3633 0.6063 -0.8299 27 1 -0.3634 -1.0217 -0.1102 28 1 3.1251 -0.8116 -1.1990 29 1 1.5948 -1.7150 -1.3022 30 1 0.5760 0.2543 -2.4923 31 1 3.1130 -0.8856 -3.7495 32 1 1.5130 -1.6653 -3.7516 33 1 0.5727 0.2653 -4.9905 34 1 1.9236 -0.4714 -5.8856 35 1 2.1066 2.0013 -5.8743 36 1 3.4598 1.2561 -4.9898 37 1 0.9225 2.3952 -3.7320 38 1 2.5227 3.1753 -3.7303 39 1 2.1128 1.9818 -1.5961 40 1 3.4629 1.2447 -2.4912 41 1 3.1262 -0.7996 1.2057 42 1 1.6052 -1.7198 1.2953 43 1 3.7170 0.6462 2.5232 44 1 2.5152 2.0014 2.6468 45 1 1.7407 2.1592 5.3441 46 1 4.0846 3.4183 6.1129 47 1 1.0094 -1.1267 4.1418 48 1 2.6838 -1.4995 3.5480 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191915926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:15 Heat of formation + Delta-G solvation = -56.659815 kcal Electronic energy + Delta-G solvation = -22997.658729 eV Core-core repulsion = 19858.793571 eV Total energy + Delta-G solvation = -3138.865158 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -39.44145 -38.78052 -35.71179 -33.88634 -32.02726 -31.13673 -30.76554 -27.97997 -26.28368 -25.50476 -24.83605 -22.98247 -22.57357 -21.02623 -19.81191 -19.27376 -18.55076 -17.21520 -15.63652 -15.28679 -15.05875 -14.87561 -14.48706 -14.24952 -14.12415 -13.87751 -13.63174 -13.39810 -12.92638 -12.62427 -12.26693 -12.14711 -11.91942 -11.78822 -11.61516 -11.52424 -11.33463 -11.21110 -11.10198 -10.93646 -10.77427 -10.67967 -10.61189 -10.45198 -10.24384 -10.16842 -9.95258 -9.79809 -9.75632 -9.19579 -8.61897 -8.12161 -7.81612 -6.25081 -4.34748 3.21525 3.26913 3.29376 4.26031 4.51581 4.60735 4.67312 4.88088 4.98002 5.05363 5.15097 5.20515 5.27962 5.39630 5.41855 5.44199 5.54977 5.57897 5.61277 5.76436 5.85820 5.88764 5.92512 5.95247 6.00190 6.03691 6.04382 6.10095 6.13879 6.16643 6.21636 6.30870 6.34120 6.36696 6.42747 6.46614 6.50648 6.70696 6.74821 6.81787 7.09815 7.26464 7.40048 7.78781 8.00011 8.11133 8.67120 9.35180 9.71908 10.80779 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.003363 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.510586 B = 8324.287912 C = 8695.822071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.110 4.110 5 C -0.086 4.086 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.119 4.119 9 C -0.120 4.120 10 C -0.117 4.117 11 C 0.022 3.978 12 N -0.468 5.468 13 C -0.020 4.020 14 C 0.247 3.753 15 O -0.570 6.570 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.070 3.930 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.003 3.997 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.389 0.611 46 H 0.272 0.728 47 H 0.069 0.931 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.373 -3.636 -17.864 18.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.104 4.104 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.157 4.157 10 C -0.154 4.154 11 C -0.107 4.107 12 N -0.190 5.190 13 C -0.149 4.149 14 C 0.206 3.794 15 O -0.383 6.383 16 C -0.573 4.573 17 H 0.083 0.917 18 C -0.131 4.131 19 N -0.539 5.539 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.126 4.126 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.245 0.755 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.409 -3.680 -18.190 18.869 hybrid contribution 2.126 -0.012 0.688 2.234 sum -1.283 -3.692 -17.502 17.933 Atomic orbital electron populations 1.21738 0.95106 1.00589 1.01975 1.21031 0.96307 0.99836 0.92793 0.91065 1.21688 1.00581 0.98632 0.93866 1.21175 1.00413 0.94887 0.93917 1.21592 1.01144 0.98192 0.94266 1.21525 1.00252 0.96121 0.97736 1.21536 1.00256 0.96146 0.97731 1.21539 1.01161 0.98292 0.94739 1.21643 1.00135 0.95880 0.97782 1.22707 0.97874 0.97280 0.92816 1.68839 1.39096 1.11102 0.99938 1.24709 0.91885 0.97486 1.00836 1.19351 0.85788 0.86660 0.87648 1.86025 1.36609 1.39964 1.75659 1.21565 1.10985 0.94895 1.29877 0.91707 1.25064 0.97525 0.94826 0.95717 1.69293 1.41426 0.99316 1.43868 0.86460 0.82383 0.77528 0.80514 1.20083 1.20997 1.19948 1.24035 0.99378 0.97666 0.91532 0.91159 0.93773 0.93818 0.92379 0.92294 0.90980 0.92198 0.92274 0.92165 0.92447 0.92483 0.92187 0.92157 0.92256 0.91393 0.92212 0.94573 0.92279 0.92546 0.91578 0.75510 0.91805 0.91300 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.78 37.16 0.33 -1.62 16 2 C -0.08 -1.18 2.47 -90.62 -0.22 -1.41 16 3 H 0.07 1.14 6.34 -51.94 -0.33 0.81 16 4 C -0.11 -1.32 4.14 -26.73 -0.11 -1.43 16 5 C -0.09 -0.91 2.07 -90.62 -0.19 -1.10 16 6 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 7 C -0.12 -1.01 5.92 -26.74 -0.16 -1.17 16 8 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 9 C -0.12 -1.15 5.92 -26.73 -0.16 -1.30 16 10 C -0.12 -1.28 4.98 -26.73 -0.13 -1.41 16 11 C 0.02 0.38 4.21 -3.83 -0.02 0.37 16 12 N -0.47 -9.81 5.69 -244.61 -1.39 -11.20 16 13 C -0.02 -0.46 7.13 -7.54 -0.05 -0.52 16 14 C 0.25 6.36 1.56 -91.24 -0.14 6.22 16 15 O -0.57 -15.71 13.53 -35.23 -0.48 -16.19 16 16 C -0.53 -14.42 8.70 -34.44 -0.30 -14.72 16 17 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 18 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 19 N -0.90 -24.28 11.02 55.43 0.61 -23.67 16 20 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.00 0.06 7.09 -7.54 -0.05 0.01 16 25 H 0.07 1.17 7.59 -51.93 -0.39 0.78 16 26 H 0.04 0.56 6.77 -51.92 -0.35 0.21 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.79 6.48 -51.93 -0.34 0.46 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.83 6.47 -51.93 -0.34 0.49 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.04 0.63 7.30 -51.93 -0.38 0.25 16 42 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 43 H 0.06 1.31 7.38 -51.93 -0.38 0.92 16 44 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.39 10.88 6.33 45.56 0.29 11.17 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 48 H 0.06 1.28 7.87 -51.93 -0.41 0.87 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -26.99 361.31 -10.95 -37.94 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.51 Total: 10.91 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.60 Total: -18.70 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: -0.78 Total: -34.87 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.48 Total: -16.19 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.99 -10.95 -37.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191915926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.715 kcal (2) G-P(sol) polarization free energy of solvation -26.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds