Wall clock time and date at job start Tue Mar 31 2020 05:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.50697 * 119.99879 * 2 1 4 4 C 1.30996 * 119.99581 * 179.97438 * 2 1 3 5 5 C 1.50698 * 120.00600 * 353.80227 * 4 2 1 6 6 C 1.53003 * 109.47278 * 233.46706 * 5 4 2 7 7 C 1.53000 * 109.47284 * 179.97438 * 6 5 4 8 8 H 1.09003 * 109.46872 * 305.00377 * 7 6 5 9 9 C 1.53002 * 109.46752 * 64.99747 * 7 6 5 10 10 C 1.52994 * 109.46999 * 184.99798 * 7 6 5 11 11 C 1.53008 * 109.46914 * 175.00328 * 10 7 6 12 12 N 1.46892 * 109.46975 * 180.02562 * 11 10 7 13 13 C 1.47483 * 111.00124 * 74.02802 * 12 11 10 14 14 C 1.53517 * 87.93237 * 138.70138 * 13 12 11 15 15 O 1.42903 * 114.34191 * 87.63708 * 14 13 12 16 16 C 1.50695 * 114.16814 * 220.32440 * 14 13 12 17 17 H 1.08004 * 119.99665 * 99.10880 * 16 14 13 18 18 C 1.37881 * 120.00746 * 279.10487 * 16 14 13 19 19 N 1.31519 * 119.99301 * 9.63606 * 18 16 14 20 20 Si 1.86792 * 120.00429 * 189.62852 * 18 16 14 21 21 H 1.48507 * 109.46894 * 94.98957 * 20 18 16 22 22 H 1.48491 * 109.47146 * 214.99021 * 20 18 16 23 23 H 1.48506 * 109.47146 * 334.99479 * 20 18 16 24 24 C 1.47482 * 111.00187 * 169.99779 * 12 11 10 25 25 H 1.08999 * 109.46899 * 265.02224 * 1 2 3 26 26 H 1.09000 * 109.46818 * 25.02093 * 1 2 3 27 27 H 1.08995 * 109.47356 * 145.01774 * 1 2 3 28 28 H 1.09002 * 109.46765 * 269.99528 * 3 2 1 29 29 H 1.08999 * 109.47607 * 29.99630 * 3 2 1 30 30 H 1.09002 * 109.46957 * 149.99865 * 3 2 1 31 31 H 1.08002 * 119.99895 * 173.79836 * 4 2 1 32 32 H 1.08999 * 109.47704 * 113.46201 * 5 4 2 33 33 H 1.09002 * 109.47025 * 353.46310 * 5 4 2 34 34 H 1.09001 * 109.46955 * 59.99656 * 6 5 4 35 35 H 1.09002 * 109.46769 * 299.99761 * 6 5 4 36 36 H 1.09004 * 109.46742 * 179.97438 * 9 7 6 37 37 H 1.09002 * 109.47519 * 299.99948 * 9 7 6 38 38 H 1.09002 * 109.47416 * 60.00077 * 9 7 6 39 39 H 1.08995 * 109.46999 * 294.99703 * 10 7 6 40 40 H 1.08996 * 109.47371 * 55.00663 * 10 7 6 41 41 H 1.09007 * 109.46415 * 299.99748 * 11 10 7 42 42 H 1.08993 * 109.47158 * 59.99589 * 11 10 7 43 43 H 1.08998 * 113.47519 * 253.46717 * 13 12 11 44 44 H 1.08998 * 113.48043 * 23.93712 * 13 12 11 45 45 H 0.96697 * 114.00193 * 89.79454 * 15 14 13 46 46 H 0.97001 * 119.99560 * 179.97438 * 19 18 16 47 47 H 1.09008 * 113.47367 * 336.06429 * 24 12 11 48 48 H 1.08998 * 113.47783 * 106.46321 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 0.0005 5 6 1.4151 -2.4357 0.1420 6 6 2.0122 -3.2437 1.2960 7 6 1.2536 -4.5645 1.4400 8 1 0.1891 -4.3612 1.5568 9 6 1.4754 -5.4189 0.1903 10 6 1.7673 -5.3162 2.6695 11 6 0.9258 -6.5757 2.8857 12 7 1.4186 -7.2971 4.0665 13 6 1.0302 -6.6044 5.3093 14 6 0.7172 -7.9808 5.9129 15 8 1.8355 -8.6213 6.5305 16 6 -0.5295 -8.0145 6.7588 17 1 -1.4548 -8.3841 6.3421 18 6 -0.4890 -7.5737 8.0646 19 7 0.5781 -6.9510 8.5155 20 14 -1.9495 -7.8607 9.1931 21 1 -1.7320 -9.1023 9.9782 22 1 -2.0937 -6.7086 10.1187 23 1 -3.1841 -7.9995 8.3794 24 6 0.4940 -8.3810 4.4478 25 1 -0.3633 -0.0892 1.0238 26 1 -0.3633 0.9312 -0.4347 27 1 -0.3634 -0.8419 -0.5891 28 1 2.4422 1.6197 -1.0277 29 1 1.6715 2.0648 0.5138 30 1 3.2129 1.1747 0.5139 31 1 3.2372 -1.1373 -0.1005 32 1 1.5002 -3.0060 -0.7830 33 1 0.3644 -2.2311 0.3473 34 1 1.9271 -2.6734 2.2210 35 1 3.0630 -3.4483 1.0907 36 1 0.9353 -6.3601 0.2931 37 1 1.1094 -4.8833 -0.6857 38 1 2.5399 -5.6222 0.0733 39 1 2.8089 -5.5974 2.5145 40 1 1.6910 -4.6735 3.5465 41 1 -0.1159 -6.2944 3.0407 42 1 1.0020 -7.2185 2.0087 43 1 1.8594 -6.0939 5.7991 44 1 0.1513 -5.9699 5.1963 45 1 1.9403 -8.4113 7.4686 46 1 0.6065 -6.6405 9.4340 47 1 -0.5282 -8.2205 4.1048 48 1 0.8681 -9.3759 4.2065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192640896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:47 Heat of formation + Delta-G solvation = -33.286360 kcal Electronic energy + Delta-G solvation = -22097.514295 eV Core-core repulsion = 18959.662686 eV Total energy + Delta-G solvation = -3137.851609 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.22655 -37.85894 -36.18311 -34.24923 -32.13570 -31.70330 -29.24110 -28.04459 -26.78949 -26.55448 -24.93595 -24.54185 -22.67839 -20.70977 -19.78227 -18.59973 -17.98661 -17.19091 -15.58232 -15.32815 -15.09854 -14.93585 -14.67115 -14.39680 -14.16545 -13.92741 -13.52222 -13.32262 -12.94446 -12.73015 -12.67103 -12.39685 -12.13859 -11.95449 -11.83191 -11.62939 -11.62068 -11.51311 -11.21170 -11.07736 -10.93705 -10.77935 -10.61077 -10.47095 -10.43407 -10.25861 -10.03500 -9.80823 -9.06894 -8.78603 -8.72715 -8.12163 -7.81165 -6.24567 -4.32957 2.00055 3.20760 3.28839 3.31544 4.27348 4.53061 4.75243 4.78856 4.93102 4.96338 5.01432 5.14880 5.21317 5.25204 5.27502 5.39307 5.50039 5.55157 5.61555 5.63307 5.66808 5.70518 5.73838 5.78714 5.85190 5.93307 5.99960 6.02754 6.06417 6.16240 6.22553 6.26329 6.30354 6.39266 6.46894 6.53679 6.62998 6.66893 6.73913 6.77804 7.17135 7.25909 7.40125 7.75741 7.98963 8.12619 8.68610 9.36008 9.49941 10.81089 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019957 B = 0.002927 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.660307 B = 9564.048068 C =10322.777183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 C -0.116 4.116 4 C -0.160 4.160 5 C -0.096 4.096 6 C -0.106 4.106 7 C -0.091 4.091 8 H 0.067 0.933 9 C -0.148 4.148 10 C -0.106 4.106 11 C 0.020 3.980 12 N -0.476 5.476 13 C -0.010 4.010 14 C 0.245 3.755 15 O -0.565 6.565 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.071 3.929 19 N -0.889 5.889 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.004 3.996 25 H 0.066 0.934 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.382 0.618 46 H 0.268 0.732 47 H 0.062 0.938 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 11.644 -15.820 19.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.143 4.143 3 C -0.173 4.173 4 C -0.178 4.178 5 C -0.133 4.133 6 C -0.144 4.144 7 C -0.110 4.110 8 H 0.085 0.915 9 C -0.205 4.205 10 C -0.144 4.144 11 C -0.109 4.109 12 N -0.198 5.198 13 C -0.139 4.139 14 C 0.204 3.796 15 O -0.373 6.373 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.132 4.132 19 N -0.527 5.527 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.125 4.125 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.050 0.950 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.232 0.768 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.924 11.365 -16.443 20.081 hybrid contribution -1.669 0.502 1.236 2.137 sum 0.255 11.867 -15.208 19.291 Atomic orbital electron populations 1.20865 0.92531 1.02050 1.02142 1.21600 0.95802 0.95036 1.01854 1.20807 0.99667 0.95102 1.01682 1.22699 0.99481 0.94000 1.01610 1.20831 0.99508 0.93875 0.99112 1.21548 0.99635 0.95167 0.98048 1.21147 0.99895 0.94574 0.95338 0.91505 1.21920 1.01726 0.99761 0.97109 1.21513 1.00044 0.95980 0.96857 1.22673 0.96575 0.95606 0.96088 1.68935 1.42113 1.07424 1.01319 1.24506 0.98533 1.00510 0.90362 1.19371 0.85112 0.87250 0.87916 1.86073 1.49705 1.72229 1.29323 1.21528 0.95736 1.43402 0.97151 0.91634 1.25076 0.96622 0.93350 0.98149 1.69789 1.29137 1.36832 1.16974 0.86480 0.82506 0.78001 0.80456 1.20326 1.21082 1.19740 1.24038 0.94514 0.96226 0.97720 0.91515 0.92256 0.91577 0.91917 0.91953 0.92013 0.87605 0.91202 0.91161 0.91950 0.92000 0.92515 0.93015 0.92762 0.91578 0.92030 0.94978 0.91700 0.91375 0.92538 0.76753 0.92186 0.91952 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 8.90 36.01 0.32 -0.66 16 2 C -0.14 -1.30 6.05 -101.06 -0.61 -1.91 16 3 C -0.12 -0.88 10.00 36.00 0.36 -0.52 16 4 C -0.16 -1.52 9.10 -36.03 -0.33 -1.85 16 5 C -0.10 -0.93 5.00 -27.88 -0.14 -1.07 16 6 C -0.11 -1.17 4.66 -26.73 -0.12 -1.29 16 7 C -0.09 -1.09 2.39 -90.62 -0.22 -1.31 16 8 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 9 C -0.15 -1.62 8.70 37.16 0.32 -1.29 16 10 C -0.11 -1.62 4.79 -26.73 -0.13 -1.75 16 11 C 0.02 0.34 4.58 -3.82 -0.02 0.32 16 12 N -0.48 -10.27 6.41 -244.62 -1.57 -11.84 16 13 C -0.01 -0.24 6.42 -7.54 -0.05 -0.29 16 14 C 0.24 6.31 1.41 -91.24 -0.13 6.18 16 15 O -0.57 -15.34 13.57 -35.23 -0.48 -15.82 16 16 C -0.54 -14.53 8.64 -34.44 -0.30 -14.83 16 17 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 18 C 0.07 1.88 5.22 -17.82 -0.09 1.79 16 19 N -0.89 -23.99 11.77 55.43 0.65 -23.34 16 20 Si 0.90 20.43 29.55 -169.99 -5.02 15.41 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.00 0.09 7.12 -7.55 -0.05 0.04 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.42 8.09 -51.93 -0.42 0.00 16 27 H 0.07 0.53 6.71 -51.93 -0.35 0.18 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.11 0.96 8.05 -52.49 -0.42 0.54 16 32 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 33 H 0.07 0.67 5.79 -51.93 -0.30 0.37 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.64 6.56 -51.93 -0.34 0.30 16 37 H 0.05 0.49 6.57 -51.93 -0.34 0.15 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.02 7.67 -51.93 -0.40 0.62 16 41 H 0.03 0.57 7.56 -51.93 -0.39 0.18 16 42 H 0.06 1.05 6.56 -51.93 -0.34 0.71 16 43 H 0.07 1.72 8.14 -51.93 -0.42 1.30 16 44 H 0.06 1.35 7.66 -51.93 -0.40 0.95 16 45 H 0.38 10.38 7.06 45.56 0.32 10.70 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.06 1.33 7.72 -51.92 -0.40 0.93 16 48 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -27.68 373.78 -10.28 -37.96 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.31 Total: 10.43 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -1.18 Total: -18.43 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: -0.92 Total: -35.18 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.48 Total: -15.82 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.68 -10.28 -37.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192640896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.672 kcal (2) G-P(sol) polarization free energy of solvation -27.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds