Wall clock time and date at job start Tue Mar 31 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00461 * 2 1 3 5 5 H 1.09004 * 109.47261 * 59.99697 * 4 2 1 6 6 C 1.52996 * 109.47131 * 180.02562 * 4 2 1 7 7 C 1.52997 * 109.47131 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47317 * 299.99507 * 7 6 4 9 9 H 1.09001 * 109.47362 * 300.00732 * 8 7 6 10 10 C 1.50703 * 109.47466 * 180.02562 * 8 7 6 11 11 O 1.21278 * 119.99818 * 0.02562 * 10 8 7 12 12 N 1.34777 * 119.99991 * 180.02562 * 10 8 7 13 13 C 1.46501 * 119.99806 * 359.97438 * 12 10 8 14 14 C 1.46496 * 120.00012 * 179.97438 * 12 10 8 15 15 H 1.09005 * 109.46873 * 0.02562 * 14 12 10 16 16 C 1.52999 * 109.47122 * 119.99809 * 14 12 10 17 17 C 1.50697 * 109.47370 * 240.00011 * 14 12 10 18 18 H 1.07998 * 119.99871 * 0.02562 * 17 14 12 19 19 C 1.37875 * 120.00027 * 179.97438 * 17 14 12 20 20 N 1.31518 * 120.00079 * 0.02562 * 19 17 14 21 21 Si 1.86801 * 119.99923 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47146 * 60.00513 * 21 19 17 23 23 H 1.48503 * 109.47153 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47540 * 300.00220 * 21 19 17 25 25 C 1.53006 * 109.46623 * 60.00180 * 8 7 6 26 26 C 1.52997 * 109.47127 * 299.99936 * 25 8 7 27 27 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 30 30 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 31 31 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 32 32 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 33 33 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 34 34 H 1.09001 * 109.46997 * 299.99574 * 6 4 2 35 35 H 1.08992 * 109.47534 * 59.99520 * 6 4 2 36 36 H 1.09001 * 109.47502 * 60.00153 * 7 6 4 37 37 H 1.09002 * 109.47153 * 179.97438 * 7 6 4 38 38 H 1.09001 * 109.47011 * 90.00343 * 13 12 10 39 39 H 1.09003 * 109.46715 * 209.99617 * 13 12 10 40 40 H 1.08993 * 109.47485 * 329.99884 * 13 12 10 41 41 H 1.09004 * 109.47421 * 180.02562 * 16 14 12 42 42 H 1.09008 * 109.47004 * 300.00163 * 16 14 12 43 43 H 1.08999 * 109.47218 * 60.00339 * 16 14 12 44 44 H 0.97006 * 120.00071 * 179.97438 * 20 19 17 45 45 H 1.09004 * 109.47297 * 60.00216 * 25 8 7 46 46 H 1.09001 * 109.47002 * 180.02562 * 25 8 7 47 47 H 1.09004 * 109.47261 * 300.00303 * 26 25 8 48 48 H 1.09002 * 109.47153 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2493 5 1 1.6767 -0.2073 -2.1393 6 6 3.5700 -0.7217 -1.2490 7 6 4.0800 -1.4434 -2.4979 8 6 3.5696 -2.8857 -2.4977 9 1 3.9325 -3.3995 -1.6075 10 6 4.0725 -3.5968 -3.7276 11 8 4.7707 -3.0081 -4.5255 12 7 3.7462 -4.8870 -3.9408 13 6 2.9031 -5.5983 -2.9766 14 6 4.2345 -5.5781 -5.1366 15 1 4.8411 -4.8935 -5.7296 16 6 5.0837 -6.7806 -4.7197 17 6 3.0625 -6.0511 -5.9573 18 1 2.0546 -5.8561 -5.6219 19 6 3.2769 -6.7320 -7.1369 20 7 4.5042 -6.9690 -7.5456 21 14 1.8240 -7.3190 -8.1538 22 1 0.9991 -6.1522 -8.5580 23 1 2.3191 -8.0194 -9.3661 24 1 0.9989 -8.2524 -7.3457 25 6 2.0396 -2.8852 -2.4980 26 6 1.5296 -2.1635 -1.2491 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9564 -0.8899 34 1 3.9337 0.3059 -1.2487 35 1 3.9330 -1.2357 -0.3591 36 1 3.7171 -0.9296 -3.3881 37 1 5.1700 -1.4434 -2.4979 38 1 1.8553 -5.4776 -3.2517 39 1 3.1603 -6.6575 -2.9812 40 1 3.0665 -5.1890 -1.9797 41 1 5.4474 -7.2945 -5.6095 42 1 5.9315 -6.4383 -4.1261 43 1 4.4775 -7.4653 -4.1265 44 1 4.6551 -7.4484 -8.3754 45 1 1.6765 -2.3714 -3.3882 46 1 1.6759 -3.9127 -2.4974 47 1 1.8926 -2.6772 -0.3588 48 1 0.4395 -2.1635 -1.2490 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245530568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:51 Heat of formation + Delta-G solvation = -70.468338 kcal Electronic energy + Delta-G solvation = -23499.999807 eV Core-core repulsion = 20360.535867 eV Total energy + Delta-G solvation = -3139.463941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.97422 -38.24734 -35.37518 -34.81531 -32.81271 -30.85898 -30.11707 -28.68322 -27.27577 -26.17302 -25.19438 -23.80007 -22.29692 -21.25182 -19.90743 -19.73119 -18.25097 -16.60608 -16.02459 -15.82579 -15.20797 -14.69673 -14.37840 -14.24046 -14.09024 -13.67858 -13.49360 -13.22142 -12.96397 -12.60804 -12.40136 -12.33513 -12.08847 -11.71229 -11.64602 -11.52678 -11.36616 -11.25473 -11.11533 -11.03747 -10.93562 -10.76268 -10.68903 -10.64060 -10.36923 -10.22632 -10.16161 -10.04697 -9.73838 -9.12791 -8.73214 -8.38765 -7.51405 -6.04323 -4.12224 3.29136 3.34165 3.35468 3.48499 4.03843 4.41787 4.56740 4.63592 4.73845 4.92951 5.07603 5.13354 5.26401 5.35159 5.38317 5.43408 5.47635 5.52783 5.59826 5.61017 5.63535 5.70410 5.72160 5.82140 5.89288 5.97405 5.98700 6.04040 6.09233 6.17948 6.19808 6.24943 6.34996 6.35607 6.40729 6.53046 6.62323 6.79808 6.86016 7.09851 7.49691 7.57299 7.75402 8.05552 8.24013 8.60976 8.87435 9.14965 9.54434 11.00912 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.003908 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.075173 B = 7163.698225 C = 7596.269941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.084 4.084 5 H 0.070 0.930 6 C -0.114 4.114 7 C -0.097 4.097 8 C -0.103 4.103 9 H 0.086 0.914 10 C 0.506 3.494 11 O -0.555 6.555 12 N -0.593 5.593 13 C 0.087 3.913 14 C 0.257 3.743 15 H 0.062 0.938 16 C -0.147 4.147 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.123 4.123 26 C -0.111 4.111 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.093 0.907 42 H 0.010 0.990 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.065 0.935 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 10.160 16.416 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.102 4.102 5 H 0.088 0.912 6 C -0.151 4.151 7 C -0.135 4.135 8 C -0.125 4.125 9 H 0.105 0.895 10 C 0.293 3.707 11 O -0.434 6.434 12 N -0.324 5.324 13 C -0.057 4.057 14 C 0.157 3.843 15 H 0.080 0.920 16 C -0.206 4.206 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.160 4.160 26 C -0.149 4.149 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.030 0.970 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.079 0.921 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.637 10.345 15.817 19.722 hybrid contribution -0.853 -0.515 -0.580 1.153 sum -6.490 9.830 15.237 19.259 Atomic orbital electron populations 1.21904 0.95521 1.01869 1.01388 1.21144 0.95524 0.96038 0.98316 1.21900 1.01290 0.96107 1.01383 1.21247 0.95511 0.95813 0.97675 0.91184 1.21659 0.94948 1.00332 0.98157 1.21305 1.00732 0.93553 0.97909 1.21290 0.96845 0.97019 0.97317 0.89546 1.20470 0.80794 0.82203 0.87270 1.90628 1.39314 1.65880 1.47581 1.48201 1.49186 1.10665 1.24363 1.21671 0.94745 0.98219 0.91070 1.18903 0.94152 0.90432 0.80805 0.92006 1.22096 0.97276 0.99708 1.01471 1.21288 0.92626 1.36287 1.06065 0.92401 1.24896 0.95875 0.95813 0.97241 1.69874 1.19275 1.41026 1.22541 0.86565 0.82490 0.78836 0.79539 1.20270 1.21190 1.20256 1.21786 0.93555 1.02144 0.98533 1.21630 1.00254 0.95056 0.97927 0.92793 0.92302 0.93152 0.91430 0.93154 0.92332 0.92789 0.91752 0.92242 0.91394 0.91552 0.93128 0.91186 0.92766 0.88861 0.97050 0.95150 0.92676 0.91607 0.90151 0.92087 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 2 C -0.09 -0.78 2.51 -90.62 -0.23 -1.00 16 3 C -0.15 -1.19 8.84 37.16 0.33 -0.86 16 4 C -0.08 -0.84 1.78 -90.62 -0.16 -1.00 16 5 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.11 -1.22 4.85 -26.73 -0.13 -1.35 16 7 C -0.10 -1.38 4.49 -26.73 -0.12 -1.50 16 8 C -0.10 -1.57 1.72 -91.77 -0.16 -1.73 16 9 H 0.09 1.18 7.40 -51.93 -0.38 0.79 16 10 C 0.51 10.63 7.08 -10.98 -0.08 10.56 16 11 O -0.55 -14.01 15.31 5.56 0.09 -13.93 16 12 N -0.59 -12.80 2.75 -175.27 -0.48 -13.28 16 13 C 0.09 1.47 8.04 59.85 0.48 1.95 16 14 C 0.26 6.69 2.63 -69.09 -0.18 6.51 16 15 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 16 C -0.15 -3.58 8.95 37.16 0.33 -3.24 16 17 C -0.52 -14.35 8.37 -34.44 -0.29 -14.64 16 18 H 0.06 1.56 7.65 -52.49 -0.40 1.15 16 19 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 20 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16 21 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 C -0.12 -1.63 4.84 -26.73 -0.13 -1.76 16 26 C -0.11 -1.15 4.85 -26.73 -0.13 -1.28 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.64 6.43 -51.93 -0.33 0.31 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.05 0.82 6.95 -51.93 -0.36 0.46 16 39 H 0.07 1.20 6.43 -51.93 -0.33 0.87 16 40 H 0.05 0.73 6.01 -51.93 -0.31 0.42 16 41 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 42 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 43 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.06 4.53 -51.93 -0.24 0.83 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.62 6.43 -51.93 -0.33 0.29 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -30.66 353.57 -8.27 -38.94 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -8.59 Total: 0.13 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.23 Total: -8.55 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.15 Total: -38.15 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.93 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.66 -8.27 -38.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245530568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.530 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds