Wall clock time and date at job start Tue Mar 31 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09007 * 109.47289 * 2 1 4 4 C 1.50698 * 109.47112 * 119.99582 * 2 1 3 5 5 H 1.08007 * 120.00192 * 120.00106 * 4 2 1 6 6 C 1.37872 * 120.00363 * 299.99857 * 4 2 1 7 7 N 1.31510 * 119.99969 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46926 * 90.00223 * 8 6 4 10 10 H 1.48495 * 109.47588 * 210.00358 * 8 6 4 11 11 H 1.48505 * 109.46813 * 330.00463 * 8 6 4 12 12 N 1.46904 * 109.47313 * 239.99769 * 2 1 3 13 13 C 1.46898 * 110.99834 * 306.04889 * 12 2 1 14 14 C 1.46895 * 110.99659 * 69.99929 * 12 2 1 15 15 C 1.53007 * 109.47041 * 170.00141 * 14 12 2 16 16 H 1.09003 * 110.31326 * 57.78709 * 15 14 12 17 17 C 1.54508 * 110.35845 * 179.97438 * 15 14 12 18 18 C 1.54598 * 104.05871 * 142.78150 * 17 15 14 19 19 C 1.54036 * 103.93886 * 359.69464 * 18 17 15 20 20 C 1.52462 * 110.09870 * 217.70442 * 19 18 17 21 21 C 1.53090 * 109.55449 * 179.36874 * 20 19 18 22 22 C 1.53003 * 109.42156 * 59.14669 * 21 20 19 23 23 C 1.53004 * 109.53696 * 299.56670 * 22 21 20 24 24 C 1.52473 * 110.08421 * 95.33803 * 19 18 17 25 25 O 1.43908 * 105.39114 * 336.53442 * 19 18 17 26 26 H 1.09000 * 109.47460 * 300.00360 * 1 2 3 27 27 H 1.09001 * 109.47408 * 60.00035 * 1 2 3 28 28 H 1.08997 * 109.47478 * 180.02562 * 1 2 3 29 29 H 0.97005 * 120.00469 * 179.97438 * 7 6 4 30 30 H 1.08998 * 109.46878 * 183.95698 * 13 12 2 31 31 H 1.09002 * 109.46950 * 303.94931 * 13 12 2 32 32 H 1.08997 * 109.47390 * 63.95130 * 13 12 2 33 33 H 1.08998 * 109.47631 * 49.99904 * 14 12 2 34 34 H 1.09004 * 109.47566 * 290.00284 * 14 12 2 35 35 H 1.09006 * 110.50916 * 24.13903 * 17 15 14 36 36 H 1.09002 * 110.62819 * 261.48762 * 17 15 14 37 37 H 1.08997 * 110.53783 * 241.08032 * 18 17 15 38 38 H 1.09003 * 110.53703 * 118.30967 * 18 17 15 39 39 H 1.08997 * 109.46009 * 299.39160 * 20 19 18 40 40 H 1.08993 * 109.45907 * 59.34398 * 20 19 18 41 41 H 1.09002 * 109.47693 * 299.16253 * 21 20 19 42 42 H 1.08995 * 109.48363 * 179.13401 * 21 20 19 43 43 H 1.08994 * 109.45927 * 179.54635 * 22 21 20 44 44 H 1.08998 * 109.44992 * 59.57690 * 22 21 20 45 45 H 1.09000 * 109.48208 * 300.46066 * 23 22 21 46 46 H 1.09001 * 109.49262 * 180.42796 * 23 22 21 47 47 H 1.09000 * 109.45361 * 300.67740 * 24 19 18 48 48 H 1.09001 * 109.45521 * 60.62094 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.6296 -0.5456 4.4124 10 1 1.3431 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7120 12 7 2.0196 -0.6926 -1.1994 13 6 1.4342 -2.0355 -1.3078 14 6 1.7529 0.0971 -2.4090 15 6 2.4884 -0.5258 -3.5973 16 1 2.1774 -1.5615 -3.7341 17 6 2.2211 0.2895 -4.8822 18 6 3.5692 0.2521 -5.6380 19 6 4.4882 -0.5725 -4.7170 20 6 5.9000 0.0029 -4.7343 21 6 6.7984 -0.8157 -3.8034 22 6 6.8177 -2.2736 -4.2674 23 6 5.3984 -2.8436 -4.2228 24 6 4.4949 -2.0328 -5.1553 25 8 3.9182 -0.4515 -3.4011 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7081 1.1610 3.4844 30 1 1.8664 -2.5521 -2.1647 31 1 1.6466 -2.5988 -0.3990 32 1 0.3555 -1.9521 -1.4398 33 1 2.1024 1.1188 -2.2604 34 1 0.6813 0.1053 -2.6087 35 1 1.9507 1.3159 -4.6340 36 1 1.4365 -0.1779 -5.4773 37 1 3.9630 1.2601 -5.7678 38 1 3.4530 -0.2411 -6.6031 39 1 6.2961 -0.0373 -5.7489 40 1 5.8742 1.0385 -4.3956 41 1 6.4112 -0.7632 -2.7858 42 1 7.8108 -0.4129 -3.8284 43 1 7.4635 -2.8554 -3.6099 44 1 7.1975 -2.3247 -5.2878 45 1 5.0151 -2.7852 -3.2040 46 1 5.4142 -3.8844 -4.5462 47 1 3.4803 -2.4291 -5.1131 48 1 4.8698 -2.1037 -6.1764 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248853148.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:05 Heat of formation + Delta-G solvation = -60.545264 kcal Electronic energy + Delta-G solvation = -24006.348617 eV Core-core repulsion = 20867.314973 eV Total energy + Delta-G solvation = -3139.033644 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -40.33631 -37.35736 -36.00689 -32.77388 -31.99571 -30.95743 -30.55848 -28.62378 -27.08082 -25.14562 -25.03792 -22.88193 -22.62509 -20.93530 -20.54184 -19.22863 -19.01728 -16.18153 -16.14885 -15.70699 -15.05128 -14.83538 -14.58860 -14.23298 -14.05953 -13.71688 -13.40261 -13.17898 -12.97833 -12.54636 -12.20578 -12.11919 -12.00437 -11.62817 -11.52563 -11.51172 -11.10221 -11.01240 -10.94616 -10.90064 -10.77478 -10.63244 -10.57332 -10.42289 -10.30212 -10.12056 -9.97444 -9.87530 -9.65256 -9.14155 -8.80535 -8.31147 -7.00184 -5.93892 -3.96475 3.36254 3.42080 3.45962 4.07289 4.47325 4.64220 4.69956 4.84027 4.93155 4.96618 5.08688 5.22489 5.31706 5.37800 5.40908 5.48886 5.54661 5.57223 5.65354 5.71964 5.77028 5.82424 5.88175 5.90214 6.00773 6.04915 6.11834 6.18926 6.26266 6.26873 6.34104 6.37504 6.40745 6.44464 6.53948 6.62746 6.72691 6.87153 6.94908 7.18833 7.35635 7.56563 7.77588 7.92727 8.24016 8.47277 8.69651 9.09848 9.68074 11.13445 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.019967 B = 0.004731 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.000473 B = 5916.758423 C = 6654.422050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.211 3.789 3 H 0.037 0.963 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.524 5.524 13 C 0.034 3.966 14 C 0.062 3.938 15 C 0.082 3.918 16 H 0.063 0.937 17 C -0.152 4.152 18 C -0.144 4.144 19 C 0.099 3.901 20 C -0.101 4.101 21 C -0.119 4.119 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.128 4.128 25 O -0.327 6.327 26 H 0.087 0.913 27 H 0.005 0.995 28 H 0.030 0.970 29 H 0.259 0.741 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.013 0.987 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.125 -3.318 -17.782 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.104 3.896 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.537 5.537 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.247 5.247 13 C -0.114 4.114 14 C -0.067 4.067 15 C 0.024 3.976 16 H 0.080 0.920 17 C -0.190 4.190 18 C -0.182 4.182 19 C 0.059 3.941 20 C -0.139 4.139 21 C -0.156 4.156 22 C -0.153 4.153 23 C -0.154 4.154 24 C -0.166 4.166 25 O -0.246 6.246 26 H 0.106 0.894 27 H 0.024 0.976 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.090 0.910 32 H 0.032 0.968 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.676 -3.230 -17.372 18.889 hybrid contribution -0.864 -0.327 0.534 1.067 sum 5.812 -3.558 -16.838 18.165 Atomic orbital electron populations 1.22408 1.01033 0.99305 1.00345 1.19310 0.89520 0.94502 0.86228 0.94489 1.21115 1.30082 1.12336 0.89615 0.91992 1.24922 0.95340 0.95199 0.98948 1.69886 1.37312 1.23253 1.23237 0.86534 0.78481 0.80013 0.82571 1.20733 1.21471 1.19992 1.62276 1.58526 1.02040 1.01860 1.22251 0.95698 0.92349 1.01117 1.22085 0.95985 0.98164 0.90475 1.23047 0.82699 0.98043 0.93787 0.91950 1.22995 0.97365 1.01782 0.96880 1.22939 0.95508 1.00907 0.98861 1.21889 0.93863 0.93801 0.84575 1.21430 0.93033 0.99740 0.99682 1.21501 0.98702 0.94620 1.00812 1.21495 0.96895 0.96401 1.00518 1.21466 0.94935 0.97854 1.01191 1.21880 1.00255 0.95431 0.99044 1.89309 1.17398 1.93694 1.24190 0.89406 0.97643 0.95059 0.93136 0.94064 0.90954 0.96849 0.90984 0.94740 0.90708 0.91165 0.90896 0.91115 0.91540 0.91319 0.90466 0.92525 0.92275 0.92785 0.90556 0.92668 0.91913 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.22 37.15 0.31 -3.91 16 2 C 0.21 5.43 2.31 -68.87 -0.16 5.27 16 3 H 0.04 1.06 7.93 -51.93 -0.41 0.65 16 4 C -0.49 -13.81 7.91 -34.44 -0.27 -14.08 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.38 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.52 -11.63 4.67 -236.29 -1.10 -12.74 16 13 C 0.03 0.70 8.46 60.06 0.51 1.20 16 14 C 0.06 1.16 4.14 -3.82 -0.02 1.14 16 15 C 0.08 1.29 2.73 -25.94 -0.07 1.22 16 16 H 0.06 0.97 5.64 -51.93 -0.29 0.68 16 17 C -0.15 -1.88 6.64 -25.10 -0.17 -2.05 16 18 C -0.14 -1.60 6.16 -25.35 -0.16 -1.76 16 19 C 0.10 1.26 0.68 -90.62 -0.06 1.19 16 20 C -0.10 -1.18 4.83 -26.96 -0.13 -1.31 16 21 C -0.12 -1.44 5.82 -26.68 -0.16 -1.59 16 22 C -0.12 -1.27 5.91 -26.73 -0.16 -1.43 16 23 C -0.12 -1.41 5.82 -26.69 -0.16 -1.56 16 24 C -0.13 -1.48 4.63 -26.96 -0.12 -1.61 16 25 O -0.33 -5.49 9.78 -35.23 -0.34 -5.84 16 26 H 0.09 2.38 6.07 -51.93 -0.32 2.07 16 27 H 0.00 0.10 6.91 -51.93 -0.36 -0.26 16 28 H 0.03 0.74 6.42 -51.93 -0.33 0.41 16 29 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 30 H 0.04 0.73 6.44 -51.93 -0.33 0.40 16 31 H 0.07 1.58 6.76 -51.93 -0.35 1.22 16 32 H 0.01 0.26 6.46 -51.93 -0.34 -0.07 16 33 H 0.07 1.42 7.93 -51.93 -0.41 1.00 16 34 H 0.03 0.63 7.06 -51.93 -0.37 0.26 16 35 H 0.07 0.93 7.87 -51.93 -0.41 0.52 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 38 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.15 7.84 -51.93 -0.41 0.74 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 1.13 7.83 -51.93 -0.41 0.72 16 46 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.75 6.97 -51.93 -0.36 0.38 16 48 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -29.20 350.58 -10.27 -39.47 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.80 Total: 0.18 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -0.91 Total: -17.79 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: -0.48 Total: -38.09 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.34 Total: -5.84 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.20 -10.27 -39.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248853148.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.078 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds