Wall clock time and date at job start Tue Mar 31 2020 05:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53090 * 1 3 3 H 1.10930 * 106.79098 * 2 1 4 4 C 1.52568 * 109.98194 * 244.05639 * 2 1 3 5 5 C 1.52961 * 110.16793 * 281.77789 * 4 2 1 6 6 H 1.08760 * 110.26487 * 61.93048 * 5 4 2 7 7 C 1.53241 * 109.32751 * 181.89943 * 5 4 2 8 8 N 1.46897 * 109.47136 * 293.65573 * 7 5 4 9 9 C 1.46854 * 111.00181 * 294.21156 * 8 7 5 10 10 C 1.53041 * 109.52041 * 174.15762 * 9 8 7 11 11 C 1.53117 * 109.27886 * 59.18377 * 10 9 8 12 12 C 1.50703 * 109.52353 * 182.43697 * 11 10 9 13 13 H 1.07994 * 120.00005 * 119.67418 * 12 11 10 14 14 C 1.37872 * 119.99898 * 299.68313 * 12 11 10 15 15 N 1.31515 * 120.00111 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00059 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47114 * 90.00272 * 16 14 12 18 18 H 1.48501 * 109.47367 * 210.00273 * 16 14 12 19 19 H 1.48494 * 109.47316 * 330.00460 * 16 14 12 20 20 C 1.53121 * 109.15923 * 302.34117 * 11 10 9 21 21 C 1.46847 * 111.00231 * 169.99812 * 8 7 5 22 22 C 1.52976 * 108.51570 * 301.05925 * 5 4 2 23 23 C 1.52580 * 110.11208 * 59.07594 * 22 5 4 24 24 H 1.10917 * 107.15867 * 193.68568 * 23 22 5 25 25 C 1.53069 * 109.99133 * 77.93936 * 23 22 5 26 26 O 1.40750 * 111.55890 * 117.65196 * 2 1 3 27 27 H 1.08996 * 109.46831 * 175.93665 * 1 2 3 28 28 H 1.09001 * 109.47034 * 295.94143 * 1 2 3 29 29 H 1.08999 * 109.46943 * 55.94337 * 1 2 3 30 30 H 1.09238 * 109.56927 * 161.42316 * 4 2 1 31 31 H 1.09241 * 109.55616 * 42.10535 * 4 2 1 32 32 H 1.08998 * 109.47286 * 53.65636 * 7 5 4 33 33 H 1.08999 * 109.47303 * 173.66121 * 7 5 4 34 34 H 1.08997 * 109.45977 * 294.17154 * 9 8 7 35 35 H 1.09003 * 109.45958 * 54.14628 * 9 8 7 36 36 H 1.08999 * 109.50331 * 299.23631 * 10 9 8 37 37 H 1.09008 * 109.49851 * 179.11973 * 10 9 8 38 38 H 1.08994 * 109.52607 * 62.24340 * 11 10 9 39 39 H 0.96999 * 120.00322 * 179.97438 * 15 14 12 40 40 H 1.09008 * 109.49929 * 297.71676 * 20 11 10 41 41 H 1.08994 * 109.53611 * 177.61792 * 20 11 10 42 42 H 1.08994 * 109.46341 * 305.86060 * 21 8 7 43 43 H 1.09000 * 109.46109 * 65.83031 * 21 8 7 44 44 H 1.09232 * 109.35734 * 179.52158 * 22 5 4 45 45 H 1.09229 * 109.36176 * 298.62589 * 22 5 4 46 46 H 1.09005 * 109.47529 * 60.00261 * 25 23 22 47 47 H 1.09005 * 109.47367 * 179.97438 * 25 23 22 48 48 H 1.09003 * 109.47647 * 299.99951 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5309 0.0000 0.0000 3 1 1.8514 1.0620 0.0000 4 6 2.0523 -0.6273 -1.2893 5 6 1.9570 -2.1519 -1.2101 6 1 0.9196 -2.4593 -1.1005 7 6 2.5287 -2.7631 -2.4938 8 7 1.6706 -2.4051 -3.6310 9 6 0.3442 -3.0225 -3.5044 10 6 -0.5659 -2.5134 -4.6245 11 6 0.0543 -2.8657 -5.9793 12 6 -0.8072 -2.3145 -7.0862 13 1 -0.3983 -1.5975 -7.7826 14 6 -2.1174 -2.7256 -7.2097 15 7 -2.8694 -2.2443 -8.1753 16 14 -2.8245 -3.9663 -6.0054 17 1 -3.4188 -3.2498 -4.8484 18 1 -3.8739 -4.7703 -6.6819 19 1 -1.7429 -4.8651 -5.5284 20 6 1.4541 -2.2512 -6.0662 21 6 2.3058 -2.7678 -4.9044 22 6 2.7805 -2.6285 -0.0122 23 6 2.2532 -1.9955 1.2720 24 1 3.0174 -2.1646 2.0579 25 6 0.9825 -2.7171 1.7277 26 8 2.0481 -0.6075 1.1595 27 1 -0.3633 -1.0251 -0.0728 28 1 -0.3633 0.4496 0.9241 29 1 -0.3633 0.5755 -0.8514 30 1 3.0942 -0.3370 -1.4422 31 1 1.4595 -0.2712 -2.1350 32 1 3.5347 -2.3788 -2.6626 33 1 2.5662 -3.8479 -2.3944 34 1 0.4394 -4.1058 -3.5780 35 1 -0.0875 -2.7607 -2.5384 36 1 -0.6727 -1.4317 -4.5432 37 1 -1.5456 -2.9838 -4.5394 38 1 0.1254 -3.9489 -6.0768 39 1 -3.7911 -2.5338 -8.2624 40 1 1.3791 -1.1653 -6.0077 41 1 1.9181 -2.5335 -7.0112 42 1 3.2987 -2.3211 -4.9552 43 1 2.3917 -3.8523 -4.9714 44 1 2.7150 -3.7163 0.0623 45 1 3.8260 -2.3469 -0.1564 46 1 1.2074 -3.7677 1.9118 47 1 0.6135 -2.2588 2.6453 48 1 0.2218 -2.6392 0.9509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259999150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:24 Heat of formation + Delta-G solvation = -63.498421 kcal Electronic energy + Delta-G solvation = -23909.400200 eV Core-core repulsion = 20770.238498 eV Total energy + Delta-G solvation = -3139.161702 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 281.210 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.11231 -38.43001 -35.22020 -33.52833 -33.14860 -31.47122 -30.25266 -29.82723 -26.85403 -26.36371 -24.62507 -22.94491 -22.68439 -22.00673 -20.66900 -18.83213 -18.48251 -16.70153 -16.48636 -16.16262 -15.68703 -15.01459 -14.86420 -14.38207 -14.29795 -14.02625 -13.79674 -13.18352 -13.06448 -12.97716 -12.82083 -12.49219 -12.38149 -12.27639 -12.01894 -11.87297 -11.55718 -11.43861 -11.33407 -11.00599 -10.86211 -10.71798 -10.54263 -10.41635 -10.10390 -9.91139 -9.83496 -9.60537 -9.45724 -9.05940 -8.90310 -8.50609 -7.93290 -6.05330 -4.03456 3.26350 3.36676 3.38896 3.55546 4.15337 4.41944 4.59614 4.61102 4.73967 4.86538 4.92557 5.14479 5.22862 5.25127 5.32018 5.36660 5.41518 5.50311 5.54925 5.57312 5.61524 5.72232 5.75902 5.78994 5.80726 5.88432 5.90866 5.92911 6.04572 6.11142 6.12564 6.18611 6.21025 6.29207 6.33543 6.40099 6.47520 6.75136 6.84844 6.93922 7.23537 7.43850 7.53543 7.65384 7.68544 7.80850 8.55818 8.99536 9.57886 11.08301 Molecular weight = 281.21amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.004522 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.226453 B = 6189.901871 C = 6545.605838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.100 3.900 3 H 0.088 0.912 4 C -0.136 4.136 5 C -0.085 4.085 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.531 5.531 9 C 0.054 3.946 10 C -0.115 4.115 11 C 0.013 3.987 12 C -0.509 4.509 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.903 5.903 16 Si 0.886 3.114 17 H -0.279 1.279 18 H -0.298 1.298 19 H -0.268 1.268 20 C -0.095 4.095 21 C 0.057 3.943 22 C -0.146 4.146 23 C 0.105 3.895 24 H 0.086 0.914 25 C -0.181 4.181 26 O -0.383 6.383 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.034 -0.175 18.604 21.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.174 4.174 5 C -0.103 4.103 6 H 0.095 0.905 7 C -0.068 4.068 8 N -0.255 5.255 9 C -0.073 4.073 10 C -0.153 4.153 11 C -0.006 4.006 12 C -0.547 4.547 13 H 0.091 0.909 14 C -0.132 4.132 15 N -0.542 5.542 16 Si 0.717 3.283 17 H -0.206 1.206 18 H -0.226 1.226 19 H -0.193 1.193 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.184 4.184 23 C 0.048 3.952 24 H 0.104 0.896 25 C -0.239 4.239 26 O -0.302 6.302 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.843 0.431 18.639 21.568 hybrid contribution -0.633 -1.859 0.314 1.989 sum 10.210 -1.428 18.954 21.576 Atomic orbital electron populations 1.22475 0.96506 1.02446 1.02198 1.21869 0.92938 0.96107 0.84787 0.89440 1.22060 1.02285 0.95027 0.98021 1.21074 1.00060 0.95829 0.93383 0.90489 1.22164 0.96797 0.97178 0.90630 1.61898 1.02787 1.59385 1.01452 1.22229 0.89811 0.95667 0.99634 1.22005 0.96463 1.01489 0.95328 1.19178 0.92757 0.95843 0.92797 1.21069 0.95591 1.25920 1.12141 0.90876 1.25018 0.97063 0.95917 0.95246 1.69902 1.07975 1.44143 1.32158 0.86860 0.78590 0.81938 0.80900 1.20602 1.22596 1.19319 1.21485 0.96081 1.00900 0.94860 1.22170 0.97429 0.97515 0.89899 1.22165 1.00293 1.00911 0.95072 1.21722 0.96240 0.80844 0.96423 0.89607 1.22501 0.99062 1.00339 1.01952 1.86368 1.83738 1.21255 1.38864 0.92604 0.92400 0.91296 0.91777 0.89013 0.91163 0.95446 0.95929 0.91939 0.91309 0.93542 0.96173 0.92758 0.91815 0.92465 0.91937 0.95779 0.91065 0.91289 0.91891 0.92078 0.92325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 9.36 37.20 0.35 -1.62 16 2 C 0.10 1.11 3.43 -26.91 -0.09 1.02 16 3 H 0.09 0.90 8.28 -50.82 -0.42 0.48 16 4 C -0.14 -1.57 4.66 -26.97 -0.13 -1.70 16 5 C -0.08 -0.97 2.05 -90.53 -0.19 -1.16 16 6 H 0.08 0.98 4.59 -52.06 -0.24 0.74 16 7 C 0.06 0.77 4.33 -3.70 -0.02 0.75 16 8 N -0.53 -8.38 4.18 -234.51 -0.98 -9.36 16 9 C 0.05 0.95 5.30 -3.83 -0.02 0.93 16 10 C -0.12 -2.47 4.84 -26.65 -0.13 -2.60 16 11 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 12 C -0.51 -14.29 9.14 -34.44 -0.31 -14.61 16 13 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 14 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 15 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 16 Si 0.89 22.11 24.37 -169.99 -4.14 17.97 16 17 H -0.28 -6.76 6.89 56.52 0.39 -6.37 16 18 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 19 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 20 C -0.10 -1.89 5.32 -26.65 -0.14 -2.03 16 21 C 0.06 0.94 5.46 -3.83 -0.02 0.92 16 22 C -0.15 -1.41 4.77 -26.96 -0.13 -1.54 16 23 C 0.11 1.04 3.43 -26.91 -0.09 0.95 16 24 H 0.09 0.74 8.28 -50.83 -0.42 0.32 16 25 C -0.18 -1.68 9.36 37.19 0.35 -1.33 16 26 O -0.38 -4.46 9.72 -33.72 -0.33 -4.79 16 27 H 0.05 0.64 5.82 -51.93 -0.30 0.34 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.16 -51.79 -0.42 0.30 16 31 H 0.09 1.21 7.72 -51.79 -0.40 0.81 16 32 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 33 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 1.00 6.11 -51.93 -0.32 0.68 16 36 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.05 1.06 3.38 -51.92 -0.18 0.88 16 38 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.06 1.30 8.14 -51.92 -0.42 0.87 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 0.90 8.01 -51.93 -0.42 0.48 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.07 0.63 8.05 -51.80 -0.42 0.22 16 45 H 0.07 0.64 8.16 -51.80 -0.42 0.22 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.60 5.80 -51.93 -0.30 0.30 16 LS Contribution 346.65 15.07 5.22 5.22 Total: -1.00 -29.68 346.65 -9.15 -38.83 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.87 Total: -0.87 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -0.83 Total: -19.98 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: -0.21 Total: -36.38 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.33 Total: -4.79 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.68 -9.15 -38.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259999150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.666 kcal (2) G-P(sol) polarization free energy of solvation -29.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds